Gene detail

Detailed information of Hgig_08656 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_08656	DNA LIGASE 1/3 FAMILY MEMBER	Chromosome8	319452149	319471548	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Hgig_08656

ATTGGAACAGGCTTCACTGATGAAAGTTTGAAAAAACACTCTGAATTTTTCAAGGAGCATCGCATTGATGAGCCCAAGTCGTACTACAGGTACGACAGTGCAGTGGAGCCTGATCACTGGTTTGACGCAGTGCAGGTGTGGGAGATCAAGTGTGCAGATCTGTCCATCTCACCAGTGCACAAAGCTGCTGCCGGTATTGTAGACAGTGAGAAGGGCATCTCTCTGCGCTTCCCTCGCTTCCTTAGGATCAGAGATGATAAGAATGTAGAAGAAGCCACGTCCGCTCAGCAGATCGCCGACATGTACAACAACCAGGACCAGATCAAGAATAGTGCTCAGGACAAACCTGACAAAGAAGAAGAGTTCTACTGATCGCAACAAGTTAATCGTGGTCTTGCAGAAATTAAACATCACCGGGAAAATCTTCGGATATCCAAATAGAATGAGATACGAATGGAATAAGTTTAAATTTTCTGCTCTATGTATATAGGGGTTAATACTGATAGAGAGGTTGGCATTAGAAGCGCGATGAAGTACAGTGAGTGAGGGAGGGAGAGAGAGTTTGTAGTGTTTTGAGGAAGATATGGAAAGAAAACGGCATGACAAGAGATATATACTAAGAGAAGTGCAAGATAGCCCACCTAATTGTTAAGAAAGTGAAGAATGTCATGAAATCCATTTATTATTGTATTAAAAATGTTTTTTACACGAAATGTACATGTATTATGTTTTTATGCTAATAATTAAACGTTTGTATCTGCGATACTCAAAACGTTTGTATCTGCGATACTTAACAGCCATATAATAACTTGATATCATGTTATTCCTATATTTTACGACAATGTATTTTTCAAGTCGAGAATGTGTGCAATGTGGTGTTTGTTATGAAGAAACAATGAGCGTAGAAACTTTGGCAGAATGTTTACTGGTATTGTTATGTTATGCCATAATTTATCATTTATGCTTAAGGATTTTGTTGTATAGTAATCTTCACGTTTTGGGGTTAACAGTCTGCAATATTTTTCTAAATTAGTGTTATGGGTCGTATTGTATATTTCACTTTTGAATCTCTATTGTAGTGTCGAAGGTGCTGAAACCCCAAATATAATGTACTAGGTATATTTTGTTACATTGGAGGGAAAATGAACAAATTGCCCTCCAACTTCAGTTGAAGGGAACACCTGGGTTCTCGGCCACCACTGCTGACATTAGTGGATGTTGCTTTGTGACTGAACAGCTTAAATACTTCCAGCATTTTCTTCGAGTCTCGATTAAATCGGTCCACCACAGAACGACGGAGCACTTCCATAAAATGACTGACATTGTGTGTGAATATATAAACGTTAAATAGACAAGGGACCCGCCTGCTTTGACCACATGGAAATTTGTTCTAGAATCGGCCGCGTTATTAATACCTATACACCGTGGGTACGACAATATTAAGATCCTTCTCCACCCTGCGTCGAAAGCTGGCTGGTAAATCACAGGATTAGTTCCAACTGCGAGGGCAATACGATCTTCGGTTCTTTATGATATTGTTATGGTTCACAGAGCCCTCTCTGGTAAGGTTCGTTTGTTATTGCATAATATAATTCAGATAATGTAACGCATTCTATAGCCTCAAGAACATTGTTTCCGCCTTTAGTTACGTAAGTAATATGACACTAAAATGTATGGAATAAAAATAGGAAATTTGTACCTTGTAATCGTAATGCCAATGTTGAATTTTTAGGGAGGTTTTAATTTTTTTTAATTGAAATCCACTACAAGGCCTTCATTATTAAATTATGCTTCCCATGGATGTCCCAGTCCTGTGCCCTGAAGGAGGAGCCCGGTGAATATTGCCAACGTTTCGTGAAGTGGCTCTATTCACGCGGGAGCATTGTAACATGAGATGGACATGACCTTGTTGTATTGGTTCCACCAAGACAGGTTATTTCCTACAACCATGATGATTGGCACACCGTATGGTGTTGGGTAATCTTTATCGTGACTGCATAAATAAATACAAATGATGGAAGACAACAACAGGCCTAGTGGCCCTAACAAGGTTGCCTTTAAAGAGGTAGATTTATTGGAACGTCATAGGCTCTAGCAGATACACCTCCTCATATGTGTTGACAGATGAGGGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04679	DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012309	Domain	DNA ligase, ATP-dependent, C-terminal	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR050191	Family	ATP-dependent DNA ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45674	DNA LIGASE 1/3 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003910	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006266	Biological Process	DNA ligation	Interproscan
GO:0006273	Biological Process	lagging strand elongation	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:1903461	Biological Process	Okazaki fragment processing involved in mitotic DNA replication	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-