Gene detail

Detailed information of Hgig_08567 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_08567	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	Chromosome8	294137045	294761545	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_08567

TGCTATATTCATAGTGAGACAGCTGCAGGAGAAAGTGGTCACCAGTGGTATTGGAAGGACCTGACCATCATAGTACTGGACGAGATCAGGAGGCTAAGGATGAGGGACAGTGCTGGTGATGCTGCTGCTACCTGCTCCTCCCAGCGTCACGGCATACACAGCTCTGTTGCTGCTGAGGTTAGCTCTCTGTTTCGGAACAAGAATGTAGCAGAACTGTGCAATCTTCAGAACAATATAGAAGCTAAACTGTCTGGTAACACCGCTGGGGTTGACGTTGGCTACTGGGAGAGCCTGCTCAGCCAGCTCAAAGTCCGGGCTACACCTCCAATGCTGGAGGCTCTGTCAGATGCAAGATCATGCGACGAGAGCTCGTGTGACACTGACGAGGAGCTTGCTCGCTACAGCTCAGCATTGGGGCAGTGCGATCAGTTAGTGACTGCATCCCTGACAGCCTACACGACTGGACGCTTCTCTCCCAAGCTGATGAAACTAGACAAACTCGAGGCCGGTACTGATATCGTCGAGGAGGATGAAGATCTCAAGCGACTGGAGTGGATGAGGACCACCGTGTTGAGGGAGGCGTGTGAAGGGGAGGCCAGCAGGAGTAAGGGGCAGCTCACTGATGATGAAAAGAGACTGCAAAAAGAGGCGCAGAAAAATATGGCGGGTGACGAGGTGCAGTTTAGTGTGGAAGCGAAGCTGGACCCCCAACAGTACCTGTGGTCAGACAAGTATCGGCCACGGAAGCCTCGATACTTCAACAGAGTGCACACAGGTTTCGAATGGAATAAATACAATCAGACTCACTACGACATGGACAATCCTCCACCCAAAATTGTACAAGGATACAAGTTCAACATTTTCTACCCTGATCTGATCGAGAAAGCCAACACTCCTCAGTACGAGCTCATACGCATTGATGAAGATCCTGACTTTGCGATGCTGAAGTTCACTGCTGGGCCGCCCTACGAAGACATTGCGTTTAAGATTGTGGATAGAGAGTGGGAGTATTCTTATAAACGAGGCTTTAGGTGTCAGTTCCATAACAATATCTTCCAGCTCTGGTTTCATTTCAAGAGATACAGATACAGCATGGATCCAAAACAAAAAAATGACTGTGACTGCCCCCTATGCATGGAGCCCCTGGAGATGGATGACTTGAACTTCTATCCCTGCACATGCGGCTATCAGATCTGTCGGTTCTGCTGGCACAGGCTGCGTACTGATGAGAATGGCCTGTGTCCTGCATGCAGGAAGGTTTATACAGAGAGTCCTGCTGACTATAAACCTTTAACACAGGAAGAGTTGCAGAAAATAAAGCAGGAGAAGAAACACAAAGAACTGCAACGTAAGCAGAAAGTGACGGAGAGTCGCAAACACTTGGCCAATGTTCGAGTTGTGCAGAAAAATCTGGTATTTGTTGTTGGATTATCATCCAGGCTGGCAGATGCGGAGACATTGAAAAGAATGGAATATTTTGGTAAATTTGGCAAGATTCATAAAGTTGTAATAAATCACACAACTAGTTATGCTGGTTCACAGGGCCCCAGTGCATCAGCATACGTGACTTATCAGAGGGCAGAGGATGCTCTCAAAGCCATATCTCAAGTTAATAATGTCCATGTTGATGGCAGAACACTTAAAGCATCGCTTGGCACCACTAAATATTGCTCACATTTTATGAAAAATCAACAGTGTCCCAAGAATGATTGCATGTACCTACATGAATTAGGGGATGAAGCGGCTAGTTTTACTAAAGAAGAAATGCAACAAGGAAAGCACCAAGATTTCGAAAGAAAATTACAGGAAATGTATCTAGGGGCTGGTGCTAATAGAAATGGTGAGGGAAAGAGTAATAAAAGTTGCAAATACGTGCCAGCTCCAACCACGAACAACAAACGGGCACACAAGGACAGTATGTCCGAGACCAGTAATGGTCCTAGTAATGTTAACGCTAGAGGCGTGTCTGTAGCCGCTGCAACAGGCTCTGGTAGTGCTAACAGCAGCAACAACACACCCACCATACAGCCACTAGACTCTATAGTTCTAAACCCTGGCGAGGGATGGCCTTCACTGCACACTGGTAACAGTAAGGACGGCAGCACAGGCAGTGCTAACAACGCTACTGCTGCTCACACCAATGGTGGTAGTGGTGTTAGTGCAATACAAAGCAACAAGAAGAGTCGTAAACACAATAGCAACAGTACTAATACTAATGGTCATGTTAGTGGCAGCTCGGCAGTTGCTGGTGTTGCTCTTAATGGTACTGGTAGCTCTCCTAGACAGACACCAACCAGAGATCATCACCACAGAAGACAGCGCAATGAAGACAGTAGTAGCAGCAGCAGCGGCGGTCGCAGCAGCAGAGGGGGGGAGAGTCTCAGCTCTGCTAACTCCACTGACAGCAACAGCACTGCAGCTGTAATGGCAACTACTCCACCAATCTCTAACACTCCACCACACGACGCAACCACCAACAACACTGAACAATACAATAGTCACGCCACTAACACGGACCACACCCATAACACCACCACAACTACTACCAACACGAAACCTAATAATAAAAGTCTTGCACAACAATCTTCCAGCAGCTCTCCTACGAACAACAATAAGAGAGCCAAGTCACAGTCTCCTCCTAATAATAGCACAACATCGCCTGCCAATCGTAATAACAACCATCTGCAGCGCAACACCAACAAACAGAATACACGACATCAACAACAAGAAAATCAGAACAAACACCAACAACAACAAATATTACAACGAGAAGAGGAAGCAGCAGCGGAGGCGGCAGCAGCGGAGGTGGCAGCAGCGGAGGCGGCGGCAGCAGCATCAGCTGAGCAACATAAACAACAGGAATTAATAGCAGCATCAGCAAAAACAGATACAGCAACAGACTCCTCTTTCTATGCAGATTTCCTCACTATAAGAAATAGAGTTAATGAAACAGCGCCGGAGCAGCCGTCAGACAACACAGAGTTCCCAAGAATGTTTGAAATTTGCTCAAGCTATGACCGTTTTTGTGAAACGGGGCGTCAAATCCGGAGATATTTTAGCGAAGTGTGGGCGGCTAGTGCTGCCGAAAGGAGACGAATGATTGATGATGAACTAGGTTTTGATCCGTTTGAAGAAACTAATAAAGCTCTTGCTGAGGATATTATCATGGAAAAGAAACAAAAAGAAGAAGAACAGCAAAGACATCAGCTACAACAACAGTCTTTGCAACAGCTACAACAACAACAGCAACAACATTTACAACAGCAACAGACTGATGCTCAGATGATTAGAAGTGATATAAAAAATTTCCTGAGCGCTAATCCTAGTCTTAATTGTCATAATGCTGCGCGGCATCCTCCACCAGGCTTCAATGGAGTCTCTTCCTTATCTAACTTTACTAATAACTTACAGCAACAACAAAATAGATTGGAAGTTAGTAAAATCTTGCCTTTCTTGTCTGGTGCGAACACATCGTCATTGGGCCAGGTGCAACAACTTAATGGTATTGTGCCTAATAGGCTCGGCAATGGGCCGCCTCCAGGTCTTAGTCTATTGAGTAACCTACAAGCTAATAATTTAGATGGCGGGACATTAGGGATAGTGGGGCACCCTAACCAATTGTTGGGTGCCTTAGACCCTTCAGGAAACAGTACACTGGCACAACAGCCACCTCCGCCACCAGGTCTCACCCTACCAAAGCAACAACAGCAAGAACCGTTTGTTATGAAGGAACTTGAGAATGGTCTTCGTAATGCGTTCCCTTCTATCAGCTCACTCAACAGTCTTAATAACATCAACTCGCTCAACACGCTGAATTCTCTGAATACCAGTGTTGGTGGTGGCGGCAACTCGCTCAATACCAACATTAGTCCTTTAAATACCATTAATGGGCTCACTTCACTTGCCCCCTTAGCTTCGCTTAGCTCCCTTAACTCTATCAACACAAATTCTGCCAGCAGCCTCAACACCACCATCAACTTCGGTGTTCTTAATGGCCAGCAGCAACAACAGAACTCATTATCTGCGCTTAATTCACTTAATGCCTTTGGCGGACTTAATCTTGCAGCAGCTCAACAACAACAACAGCAGCAACAAAATGCAGTGAACACGTCCGGCAGCAACACGCTGTCTAACCTCTTTAACATTTCACAGCAGCCACCGCTGCCGCCGCCCACTCTTCTTCATCAGATTGCTATTCACAATGCACAGAAAGGCTGGAGCAACAACAGCATGGGCAACGGAGGCACAGACCTGACGGCCCTGGATCCAGCGATTGTGTCATCCGGTCAGCTGACAGACTCGCGCTCAGATTCTCCACCAGAGTGGCTGCGGCTCGTTGAACAACAGATTAGCAACAGTGCTGCAACTTCTGGTACTGCTTGGCCATCTGTGCTGCCACCACCACAGCAGCAGCTACAGGTTAACAACACCAGTGCTTCCTTGCAACAACACCTAGTTAGCAACAGCGGTCTACAGGCTTCATTGCTGCAGCATCACCAGCAACAGTTGGCTGCAGCTGTACAGCAGCAGCAACACAGGCAGCCAACAGCATGGCCACCAACTTCCCCACCACCAGGCTTCCCATCCATCTCTCCAATGCATCAGCCAAAACACAAAATTGACAGTGAG

Transcript

Hgig_08567

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF09732	CactinC_cactus	Cactus-binding C-terminus of cactin protein	Domain	Interproscan
PF10312	Cactin_mid	Conserved mid region of cactin	Family	Interproscan
PF14570	zf-RING_4	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018816	Domain	Splicing factor cactin, central domain	Interproscan
IPR019134	Domain	Splicing factor Cactin, C-terminal	Interproscan
IPR034261	Domain	CNOT4, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039515	Domain	NOT4, modified RING finger, HC subclass (C4C4-type)	Interproscan
IPR039780	Family	CCR4-NOT transcription complex subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0030014	Cellular Component	CCR4-NOT complex	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-