Gene detail

Detailed information of Hgig_05288 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_05288	JM1 PROTEIN	Chromosome5	84487505	84846725	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_05288

TGCAACTTTTGTCCTGTGCATGACAAACATATAGCTACAACTCCAGCATCATTTCTGAAAGAAATAATACAGAATATTGAAGGAAATAAGATAACAGTTGAGGCAAAGTTTGTGGAATCTCCAAATACCAAACTGCTCATCAAGAATCCTCTTGCAGACCAGAATGTGTGTCCCTTGTGTGCTCTAAACCTCAACTTGAAGCACACGGATGTGTTGGTGCTGAGTCAGTTTGTGAGGTCTAACGGTCAGCTGCTGCCTCGTCGTATTACTGGTCTCTGCTGCTCTCAACAGTACAAATTAACAATGCTGGTCACTATGGCCAAGAAAGCTGGTCTTATGCCTAATCTTGGCCCTGCCAATAGTCATAAAGATCCTGCTATGAGAAGAGGATCAAAGAAATACAATCGTTACTTTGATGAATCTACCATTAGCGATACGAGGTTGAGGAACATTGCTCGGTACAAAGCTATTAGGATGTACAATGAAAATATGGATGAGGTGGACAAGATCATCATTAGCAGTCTCAACATGCTGGGTTGTGATCTGGAGAGTGAGATCACCTCGCTCTCACAGTTTGGACTGCAGGAGGTTGTAGTGGGGGTGGTGTACTGTCTGCACGTGGTCAGTGCTGAACGCTGTGGACAACTATCACACAAACTGCCCCAGAACATGGCCCAGCGCTTCCGTGCTGCTGCTCTTATTGCACAAGAAGTTAAGTCACTAGGCTACCATGGCGATCTAGGCTACCAGTCACTTCTCTACCCGAATGAGGTGGACATCAGGAGGCTGTTCTCATTCCTGCTGGAGAAGCGTTTTCAGATCACCATCTCAATATCCACTCCTAAATACATATTTGAAAATGTGTTCTATGTTTCAGGCGGCGCTGGACTGTTGTTGGCATCAGCAAGAAAGCAGCTGAGATCGCAAGTGTCTCGTCCTTGGCTTCCACCTCACTGTCGCGCCGCTCTGCTCAAGAGGCGCCACCAACAACAACAGCAGCAGCAGGATCAACAGCACTTGCTGGCACCACTGGGAGAAACGAGGCACCTACACCCTTACCAAGCTTTGCACTTACTCGATGTGTGCAATAAAATAGAGCAGGAGAACAACAGGAGCAAAGACAGTAAAGAACGGACAGGTAACAGCAAAGCTTCAAATGTTGTGTCAAGTTCCACTGATGAACCTACTGGCGTTTGCATTAAAAAAATTGCAGACAACCAAAGAATTTTGCTGTGCAGCTTGCTGGCGTCACATGCCCGGCAGCTGCAGCTGGCTCAGATGTTACCATCCATCACTGCTATCATAACCAGTGGTTTAGATCCTCTGACGTCAGAGCAGTTTCTGAATGTGCCGTCGCCATCTACGGACAGTCTGGTGACACCTTTGTCTCCCTTGTCACCCATGAGTAACCTGTCCCCTGTGTCTCCCGCTGAGGCTGAGGGTCCTGAGGTGAGCAAGGAGAAGAAGCGAGAGGAAGGCGTGAAGGACTTGCAAGCTTCGCTTGAGAAGCTCGAGTTGCAGAAGCAAGAGCGACTGCAGCTCGTACAACATCAGAAAGAACAACTCGAAAAGTTATCGTCAGAGTTGCAGCTATCACGGGATGCTGAGTATCAACTGCAGGAGGAACTGGTATCATTGCAGCGAACGCTCGAGTTGCTGCCTTCACTCCAGGAGAACAGGGCCCGGCTGGAGGCCGTCATTACCTCCAGTGATACCAAGATGAGCAAACTGAAGCATCAGTTTACAGCTCACTGCACTCCTCTGCAGCACAGCATTGAGGAGCTTGGCCGGCAGATACATGCCCAGCAGGGCGAGCACGAGGTGTTGAGTGCTGAGGTTCAGTCCCTGCGTCAGAAGAGGCAGGGCGTACTGCAGGAAGCTCCTACAATACACGCGCAGACGCAGCTGCTGACGGAGAAGCTGCAGACCAGAGGGCAGGCGGTAGCCAGGAGTACGCCGACTTCAGCCTGGCTACGGGTTACACTTCTTGTTTACCGTCAGACTCATATAAATGAGCGAGTAAAAGAAAATGTTCGGGAAGTGGAGGAAGCTGTAAACAAGTTGAAAGAAGGTAAAATTGACAGGTTGTCAGTGGTTGACAGGTTGTCAATCAAAGCGTCGTGGAGCAACAACTCGAGCACGGGACTCTACCGGCGTGTGATCAGCCTGCACGACAGTTGCAGCTCCATCGTCAACGTCATCAGGGAGACCGGGGCCACAAAGAGACAAGTCGCAGAGCTTAAAGAACAGGTTATGCTAGAGGGGAGGAGGGAGACTGCCAAGGCCCTCGCCAAGCTGCAGGAGGACCTCGCTGCTGTCAAGCAGGAGAACACTGCCATTAAAGGTAGGGTCGCCTCGCGATCTACGCTC

Transcript

Hgig_05288

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01084	Ribosomal_S18	Ribosomal protein S18	Family	Interproscan
PF05667	CCDC22_CC	CCDC22 protein coiled-coil region	Coiled-coil	Interproscan
PF21674	CCDC22_N	CCDC22 protein N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001648	Family	Small ribosomal subunit protein bS18	Interproscan
IPR008530	Family	Coiled-coil domain-containing protein 22	Interproscan
IPR036870	Homologous_superfamily	Small ribosomal subunit protein bS18 superfamily	Interproscan
IPR048348	Domain	CCDC22, coiled-coil domain	Interproscan
IPR048349	Domain	CCDC22, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15668	JM1 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0097602	Molecular Function	cullin family protein binding	Interproscan
GO:2000060	Biological Process	positive regulation of ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-