Gene detail

Detailed information of Hgig_04678 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_04678	DICER-RELATED	Chromosome4	302245935	302270025	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_04678

ATGAGGGAGGTCATGCGTAACTACGCATCAGTAAAACAGAACGACTCTACGGCAAAACTACCCCGGATACTCGGCTTGACAGCTTCCATTATACAGAAGAAATGCAAGCAATACGAGATCAGCAAGTTGCTCAATGATCTGGAGATTTCTCTTGACAGCATATTAATTACGTCTAAGCATTACGAGGAAGTGCTTCGGCACACGACCAAGCCTAGAGTGACAATCTTGCATTACAATCCCACTATTGTTGAGAATATGAGTGAACATTCTCAAATGTTGATCTCTCATTTGAATGGAATGACTGAAGATGTTTCTAGTGCATTAGATATTGCGAAGGATGATAAAAAGAAAATCTGCAAAGTCCTTCGGAATACGAGGTTGGCTATAGAGGATCTTGGTGAATGGTGTGGCAGACGAGCCATTGAATATGAGATGGAGCACTTCGAGGAGTTGTCATGTGGAGAATCTGACTCACGATTGGCTGAATTGATGTCCGAAATAAGTGCTAGACTTACTATGCTTTCTCGTCTTTGCTCAGAGAAAGAAGAGACATTTGTTGATCCGCGAGCTCATGTTAGCCATCATGTGTCGAGGTTACTTCACATAGTTCATAGAACACGAACGGCCGAAAGTACCCATGGTCTTATCTTTGTCAAAACCCGTTTCTCAGCTTTTTTGTTATCTGCCTTGCTGGAAAAACTAAGACTATCAAATGAAGAGTACGCGCATTCAAGCTCAAAATGCATCGTGGGGTCTAATGCTAATTCATTTGGAGATTTGGTCGCAACTAGGTTGCATCTGAAGGAGCAGACAAGAACGTTAGAGAGCTTTAGAAGAGGAGATTTTCACTTTCTAGTCTCTACCAGTGTACTCGAGGAAGGTGTGGATGTTAGAAAGTGCAACTTGGTTATACGTTACGATACCCCAGACAACTTCCGTGCTTATGTTCAGGCAAAGGGAAGGGCCAGAGCAGTTCCTTCCCATTATGTTCTTATGGAAGAAACTGGTGGGAATTTACAGCGTGATATCTTAAGTTATCAAAACTTAGAAAGTGACATACAGAAAGTGTGTCACGGTCGCGCACTTCCTACGGCTGCTCAAGTTATTGAATCTTACAACGATGATTTACTGGAGCCATACATGCCTTCTGGTGCTGATGGTCCCAGAATTACTTCGTGTTCCTCTATTTCCCTTCTCAACCGCTACTGTAGTGGGCTTCCACACGACTTGTTTACATGTCTGCAACCAAAGTTTGATATCAAATATGTTAGTGGTGAGACAGTAAGAAATTATTCCAACAAAGATGAAGGTGAAGAATATGTATGTTCCGTAAAGCTCCCTATGAATGCTCCCTACCACAATACTGTGAAAGGTGTGAAAATGGTCACTATTGACTGGGCTAAACGGTCTGCTGCTCTCGAAATGTGCAAGATCCTGCACCAAATCGGAGAGTTGAATAATAATTTGTTGCCGTGTGATAAAGATCTGGTGAATGAGACACTTCTTGAACCTCTTATTGGCTCTGATAAAGATGACAACGAATCGTATAGAGGCGGCAACCAACGGCGGCATTACAAGAAGGAGATCTGCTCTGCATTTGCATCGTCTGAACAATCAACATTATTCCTCTATGCCATAAACATCGAGCATGTAGAAACAGTAGATAATGGTGCTGAGTTTAAAGGTGATGGCAGTATTGGACTGCTAGTTGCTTCCGAGCTTCGCACTTGCTCGTTCCCTCTTTACAATAATAGGTGGGGTAAAGCTATTGTTTGTGTTAAGTTGCTGCGTACTATTTCTCTAGAGCCTCATTTGCTTACAAAAGTTGAGCATTTTCAAAAGCTTGTGATGCAGTCACTTCTTAAAATCAACAGTTCAATTATGCAGTTTTCCAGAGCTGACAGCAATTTCAAGAATCTTATTACTCCATTGATTAATGGCGATTGCATTGATTTTGAGCTTTTAAATAAAGTCTCGCGAGTGTCGGGGTTTGAGGGTAAACCACCTACAGATGAACAACGCGAGAAACTTTCATGTGATCGATCTCTGTACAACAACGCCATTGTGATCCCATGGTACAGCAGTGCAGATGGTACTTACCGCGTTCTGAAGGTCACAGATGAAAAACCAGGGTCCCCCTTTCCACAGCTTAATACCAAATGGAAAACATATAACGACTACTTTGAGGATAAATACAAACTTAAGGTTTTCAATCAAGAGCAGAATATGCTAGAATGTCTACACGTGCTCTCTGATTTAAATTACCTTACTCCAGTGACTTTAAGAACTCGCAAGTCTAAAGAGCATCCGAAACTTATACCAGAATTATGCTTTTTGCTGCCAATTTCTGGTCAACTACACCAGCATATCAGTTGCCTCCCTTCGATTCTGTCACGCCTCAATGGTCTGAACGTAACCGCTGAATTCCTAAGTTCTCTTGACGTGCTTCCCCTGTCACCTCCCAACAACGAACTCATAGATTACGACTGGTGTCGCAATCTCATCACAGACATACTGTCATCTTCACATTCAAGCAACATCTGTGTGGCTTTGCAAGAGAACTATAGTATTACGTTCAATGAGTTCAACACTCGTTTGATAGAGACAGGACGTCCTCCCGTTATAGAGCGTCTCAGAACTAACGGGGGCAAAGCTAAACGTAACATGACAATGTGTCCGACGCAGTACCTACAGGCTCTCACACCACTCAGCGCTGCGGACTGCTTTAACTTAGAGCGACTTGAGGTCATTGGTGACTCGTTCCTAAAGTTCCATATTGGACAGCTGCTTTTTTTGCTTTTTCCTGACTGGCACGAAGGACGACTTACTTCCCACAGGGGGCAATTTGTGTCGAACTCAACACTGTACAAAGTTGCAAAACGGTTACGTCTTCCTGGCAAGCTTCAGTCCGCCAAACTGTGTCCAATAGAAAATGGACCTGCACCAGGCTTCTGTGTGACTCCCGACTCAGCTAACCTCCTGCGCGAGGAACTCAAACTACCTGCCAATCTTTGGCATAATTAC

Transcript

Hgig_04678

CAGGTCAACCTGCTGATAATAGACGAGTGTCACCACACTACGGGCAGTCACGCTATGAGGGAGGTCATGCGTAACTACGCATCAGTAAAACAGAACGACTCTACGGCAAAACTACCCCGGATACTCGGCTTGACAGCTTCCATTATACAGAAGAAATGCAAGCAATACGAGATCAGCAAGTTGCTCAATGATCTGGAGATTTCTCTTGACAGCATATTAATTACGTCTAAGCATTACGAGGAAGTGCTTCGGCACACGACCAAGCCTAGAGTGACAATCTTGCATTACAATCCCACTATTGTTGAGAATATGAGTGAACATTCTCAAATGTTGATCTCTCATTTGAATGGAATGACTGAAGATGTTTCTAGTGCATTAGATATTGCGAAGGATGATAAAAAGAAAATCTGCAAAGTCCTTCGGAATACGAGGTTGGCTATAGAGGATCTTGGTGAATGGTGTGGCAGACGAGCCATTGAATATGAGATGGAGCACTTCGAGGAGTTGTCATGTGGAGAATCTGACTCACGATTGGCTGAATTGATGTCCGAAATAAGTGCTAGACTTACTATGCTTTCTCGTCTTTGCTCAGAGAAAGAAGAGACATTTGTTGATCCGCGAGCTCATGTTAGCCATCATGTGTCGAGGTTACTTCACATAGTTCATAGAACACGAACGGCCGAAAGTACCCATGGTCTTATCTTTGTCAAAACCCGTTTCTCAGCTTTTTTGTTATCTGCCTTGCTGGAAAAACTAAGACTATCAAATGAAGAGTACGCGCATTCAAGCTCAAAATGCATCGTGGGGTCTAATGCTAATTCATTTGGAGATTTGGTCGCAACTAGGTTGCATCTGAAGGAGCAGACAAGAACGTTAGAGAGCTTTAGAAGAGGAGATTTTCACTTTCTAGTCTCTACCAGTGTACTCGAGGAAGGTGTGGATGTTAGAAAGTGCAACTTGGTTATACGTTACGATACCCCAGACAACTTCCGTGCTTATGTTCAGGCAAAGGGAAGGGCCAGAGCAGTTCCTTCCCATTATGTTCTTATGGAAGAAACTGGTGGGAATTTACAGCGTGATATCTTAAGTTATCAAAACTTAGAAAGTGACATACAGAAAGTGTGTCACGGTCGCGCACTTCCTACGGCTGCTCAAGTTATTGAATCTTACAACGATGATTTACTGGAGCCATACATGCCTTCTGGTGCTGATGGTCCCAGAATTACTTCGTGTTCCTCTATTTCCCTTCTCAACCGCTACTGTAGTGGGCTTCCACACGACTTGTTTACATGTCTGCAACCAAAGTTTGATATCAAATATGTTAGTGGTGAGACAGTAAGAAATTATTCCAACAAAGATGAAGGTGAAGAATATGTATGTTCCGTAAAGCTCCCTATGAATGCTCCCTACCACAATACTGTGAAAGGTGTGAAAATGGTCACTATTGACTGGGCTAAACGGTCTGCTGCTCTCGAAATGTGCAAGATCCTGCACCAAATCGGAGAGTTGAATAATAATTTGTTGCCGTGTGATAAAGATCTGGTGAATGAGACACTTCTTGAACCTCTTATTGGCTCTGATAAAGATGACAACGAATCGTATAGAGGCGGCAACCAACGGCGGCATTACAAGAAGGAGATCTGCTCTGCATTTGCATCGTCTGAACAATCAACATTATTCCTCTATGCCATAAACATCGAGCATGTAGAAACAGTAGATAATGGTGCTGAGTTTAAAGGTGATGGCAGTATTGGACTGCTAGTTGCTTCCGAGCTTCGCACTTGCTCGTTCCCTCTTTACAATAATAGGTGGGGTAAAGCTATTGTTTGTGTTAAGTTGCTGCGTACTATTTCTCTAGAGCCTCATTTGCTTACAAAAGTTGAGCATTTTCAAAAGCTTGTGATGCAGTCACTTCTTAAAATCAACAGTTCAATTATGCAGTTTTCCAGAGCTGACAGCAATTTCAAGAATCTTATTACTCCATTGATTAATGGCGATTGCATTGATTTTGAGCTTTTAAATAAAGTCTCGCGAGTGTCGGGGTTTGAGGGTAAACCACCTACAGATGAACAACGCGAGAAACTTTCATGTGATCGATCTCTGTACAACAACGCCATTGTGATCCCATGGTACAGCAGTGCAGATGGTACTTACCGCGTTCTGAAGGTCACAGATGAAAAACCAGGGTCCCCCTTTCCACAGCTTAATACCAAATGGAAAACATATAACGACTACTTTGAGGATAAATACAAACTTAAGGTTTTCAATCAAGAGCAGAATATGCTAGAATGTCTACACGTGCTCTCTGATTTAAATTACCTTACTCCAGTGACTTTAAGAACTCGCAAGTCTAAAGAGCATCCGAAACTTATACCAGAATTATGCTTTTTGCTGCCAATTTCTGGTCAACTACACCAGCATATCAGTTGCCTCCCTTCGATTCTGTCACGCCTCAATGGTCTGAACGTAACCGCTGAATTCCTAAGTTCTCTTGACGTGCTTCCCCTGTCACCTCCCAACAACGAACTCATAGATTACGACTGGTGTCGCAATCTCATCACAGACATACTGTCATCTTCACATTCAAGCAACATCTGTGTGGCTTTGCAAGAGAACTATAGTATTACGTTCAATGAGTTCAACACTCGTTTGATAGAGACAGGACGTCCTCCCGTTATAGAGCGTCTCAGAACTAACGGGGGCAAAGCTAAACGTAACATGACAATGTGTCCGACGCAGTACCTACAGGCTCTCACACCACTCAGCGCTGCGGACTGCTTTAACTTAGAGCGACTTGAGGTCATTGGTGACTCGTTCCTAAAGTTCCATATTGGACAGCTGCTTTTTTTGCTTTTTCCTGACTGGCACGAAGGACGACTTACTTCCCACAGGGGGCAATTTGTGTCGAACTCAACACTGTACAAAGTTGCAAAACGGTTACGTCTTCCTGGCAAGCTTCAGTCCGCCAAACTGTGTCCAATAGAAAATGGACCTGCACCAGGCTTCTGTGTGACTCCCGACTCAGCTAACCTCCTGCGCGAGGAACTCAAACTACCTGCCAATCTTTGGCATAATTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00636	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF03368	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999	Domain	Ribonuclease III domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003100	Domain	PAZ domain	Interproscan
IPR005034	Domain	Dicer dimerisation domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036389	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR038248	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950	DICER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004525	Molecular Function	ribonuclease III activity	Interproscan
GO:0004530	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006309	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0016442	Cellular Component	RISC complex	Interproscan
GO:0016891	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan
GO:0090501	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-