Gene detail

Detailed information of Hgig_03054 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_03054	PERIOD CIRCADIAN PROTEIN	Chromosome3	123081345	123139219	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_03054

CGGGCAGACCAGGGTTATGGTTCCACACAATCCTCGTCCAATGGACATAGCCATCGGAGCAGCAGCTACAATGGCGGAGGGAGTCTCACCAAAAGCCGCAACAGCGGCTCGAGCCAGAGCAGTGGGTTTTGGGAGCAGCACAGGAACAGTCAACAAAACAGGAGCGTGAGGTTCTTCTCGGATCAGGAGCCCACCAGCATAAGGACAAACTTGAACGATAACCAGAGCAAGAGTAACAACGAGGGGCAGGCGGGAGATTCAACCCTTGATAACGATGTATTTGATAATGAAGGGATTCCGTCTGAAACAAGCATTGCAGCCACAGTCAACACTTCCTCCATGACAAGTTTTTTACTTAGGGGAAAGCAAAGCAAAGAGCAGAAACACCGGGACTACAAACGGAAGAAACTGGACGATGGACACTATCTGTCGTACGACGGATTCCGACTTCCATCAGAAATGTTCTCATTTACACGTGACGTCTCCACGGTCAGCAAGGCAACCGAAGCAAATATCTCGCAGCGGCCTCATACCTACTCCCTTTCACCTCAAAATTTACAAAAACAGACAGGAGAATTCAGAGAACCAAATATATGTCTGTCGGTTTCAAATAAAAACAATTATGAAGTTAATGGCAACGAATTTAAATTGTTGCCAAATATACCAGGATCGAAATCTGCCCTGAATGTCACGTGCCGACCAACTGCGAGCAACCTGGCTTTATCGGTCACAATGTCACCATCACAGGTTACCTTAAATCTAACATGTCAAGTCCAGTGCGAGCGCGAGCGCGAGAGTGACCAACCAACTCTCATCTACAATGAAGCAATCAACTACATCAGGAGGATCAAAGAGGGAAGAAAAGACAATGGACCCCTTGTTCACAGCCACGACGTGCTTCAGCTTCCTCTCGATCACCACCATGCGCCCGCAGACTTCATCAAGAGCTTCGTAGGCAACCACGAAGGCTTCACGGTAGTTCTGAGTATCACGGACGGGACAGTGATGCAAGTTTCACCTAATATCACCCGGGTTTTGGGTTTCCCCGTCGAAAGGCTCCTGGCACACTCGTTCATTGATTTCGTCTATCCAAAAGATGCCGTTCAGTTCTCCTCCAAAATCATCAATGGGATGAGTTTTTCGATGAAGAATTCTTCTAAAGGAACTTTACCAATGTCGCCATTCTACTGTCGAATTCAGGAGTACCAGACCTACAAGCAGGCACAATTTAACGAACGAGAAGTGAACTCCTACAAACCGTGCAAGATGACTCTCAATTTCAGCAACACTGACTCTGAAGCTAATGAAACAGAGATGGTGACGCCAATTCCATCCATACCATTGACCTCACCGGATGTTTTACTTGCGGAGATCATCCCTATACCATCTTTCTACAAAGTTCTCAATGAAATTATAAATGAAGGGAACTTTATAATACGGCACTCTGCTTCCTGCATCTTTTCCGAGTATGATCCAGGGGCGATACCATTCCTGGGCCATCTTCCTCAAGACATCACAGGCAATTCTATCTTTGACTGCTATCATCCAGAGGACTTACCACTTCTGCTTACCATTTATCAATCGATGATCCGAGAGGAAGGCAGACCGTTCAGAAGCGAGTCGTACAGATTCCGGACATTCAACGGTAGCTGGGTAGTACTTGCGACGGAATGGCTCTGTTTTGTAAACCCGTGGACAAGAAAAATTGATTCGATAATCGGACAGCATAAAGTTGTTCAGGGACCACAAGACATTTCGATTTACATGGAGGACAAAAAAGGTTCAATAAATTCTTACTCGGAGGAAGTTTGTATCATAGCTGGAAAAGCTCGTCGAGAGATCATTGAATTGCTTTCCAAGCCTGTCGTAGCAAGGCTTGCAAGAGTCATACAGCAAGATGTCATCTTCCCTCCTACTGCTTCGCCGATCAAACATGAGAGCAGAAAGATGAGGGTTCCAATGTCCCGACGCCGGAGGACTCTCGCAGATATGATGAGCTGCTTAGTGAACGATATCCAGAGCAGGGAGATGAAGAACATAACCGGCACTACAAAGCACTCCCCCATCCCAGCGTCCGGCATCAGCACCAATACATCAAACGCTCTCACGTCAACCTCCTCAGCCATGGCAAACCATGCGTTCGGAACTCGAAGATATCAGACTCAAGTATCGATTGAGCAGCCATACACTCGGAACCTTCCTACTCCACACGTTGCCAAGGTTGAGTCGTTGCTTTCATCCTCCGAGTCTCCGTCTACCTACAGCCGTCTCAACTACTCATCTACAATGCTACGTTTCTTCCAGAGTAATCCGAAAACGGCGTCGCTAGATGCCAGTAGTGAAAGCAAAATGGAGTCTTCTGCCCAGGATAGTGTCGACGAAGGCAAGAGCAACTCACCTAAGCAGCTGTACTGCAAGTTTTCATCGTCAGCACCGTCTGGGGTCATCAAGTCCCTCTATATGTCAGGCTACGGTTCAGGATCTGGTGAAACTGCATATTTGACAAGGAAGTACGGTCGCAAAGACGTCACTGATAGTGGCAGTGGGGAGAGCGCTAGTGGCCAAAGTTCAGCCAGTGGAGGACAGAGATGCAGCACCTACAGGCACGTACCCCTCACGGAGGAGGTCATCACTAGACACAATCAGGAAATGCAAATGTTGTTCATGGAGCGTCAGAGAAAGAATACTCTGGGCAACACGATAGCCTCCAAGCAGAGCGAGAGAGCTCCGCACAATAGAATACATTACAAGAAGTCAACAAGAAAGTCGTCGTTGAAGTACGCGGTAAAGAGACCTTGCTCCCCAACGGAGCCAGAGAACTGTCGTGGCAGCAAATTCCCTTTCTTGGAGCAGTCTCTCATCCAAACTTCAACAAAACCAGGACCATCTGGCCTACGCAATACTTCTCAGATCAACAACATCACCAAACCATCAATTAATTTTTTGGACAGCGGATCAAACACGAGAGCGGGAGCCGTACCACCAATAAACGAGCCAAAACTTACAAGCAACCACCTGAACCGTCAGGAAATGATGGCACCGTTCTTCGTTCCACCCCATCACCTGGCCGGCCACCCTAACGGATACCCTCCTCATTATCTTCCTCCTCCTCCTCCTCCCCATAACATCAATGCAGCCAGTACTGCTGCTGATATCTCTCCAGACCAACATCTCCAGCTCAACACCAGTACGCATCACCATCCGTACCCCATACCGGCAGGAATGATGGGCCCTCATCAGACGCACTACATGACGCCACAAGGGTTGGCTCTTCCAATGTCGTACATGAGCGGCTATTCTGGTATGTGCATTCCTCCTCCACCGTACAACTCTGCACCACTATACGGAGCGCCGGCCATGATGTTGCCAAACATGATGTTGCCACATAACTATATGCCACAACCACCGGGGTCCCGACTGTCCTCCACGGCCGGCCATGTCAATACTCGACTTTCAGATGCTCCAGATTACGATATCATCGAACTGCCCCATCTCGAAAGGCAAAAATCTAATTTACAAGAACACCACCAACAAAATCTGAATTCGCAGGAACACCTGGACTTGCAGCAGCAACACCACCAACAAGCATTGCTCCACCCCAAGTTTTCGCAAGTGTCCGTTCACCTACAGAAGCGTTCTGATTCAAGAGCCACATCGGTAAAGGTAGAGCCTGGATCTGTACATGGTAGCGCAGCGTCTGCTTCTGTCCAGCTGCGGTGCTCGATGTCGCATCCTCCAGAAAGCCTACTTTCAGAGCTCGACGATACAGCGCCTACTGATCAAGAGTTGTTGTGCGTGCCGCGTGTTCCATCTCACACTTCACTCTTTTCGAAATCTACGAGCGTCTTAGGAGAGTCCGAAAGCGTCGCATCTCCTGAAAAGCGACCACAATTCCCAGACGAACAGCATGGCGAGAATAACAGTGACTTAGTGATGTCCACAAGCTCTCCGGCGGATGACAGCATGCAGCTACTTTCTGAATATTCAATCGACACTATTGAGATTATCGCTTTAACTTTACAACCAGCATACGAAGACCGACCTGTGTTACAAGACCCAGCGTGGTTGGAGCAAGTGGAGGTGACCCCGCAGTTGCTGTACCGCTACCAGCTTCAGACCAAAGAGTTGGCCAACGTGCTCAAGAACGACATGGATGAACTTAAGAATTTAAACCAGCCTCCACTTGTAGAGGACCAGCTGACGTCTTTGTACCAAGAACTGGAAATAGACGGCGACAACCTGCACCTAGACGAAGGAATCACATCGTCGTCTGGAGAAGACATGCTGGAGGCATCTACTAAGGACTCAAGTGAAAATAGAAGCAGCATGTCCAACAGACTTCACTCATCGGCATACTTCAACAAACAAGCCATCATTCCTGGAGTAGAGGCAGCCATTCCTGCTGCTGAAGACTCTTCATCTCACAGATCAGCATACAGCAATACAAATTATTTCAGGTTGATAAACCAACAGCAACCAAAC

Transcript

Hgig_03054

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12114	Period_C	Period protein 2/3C-terminal region	Family	Interproscan
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR022728	Domain	Period circadian-like, C-terminal	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR050760	Family	Period circadian regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11269	PERIOD CIRCADIAN PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0001222	Molecular Function	transcription corepressor binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0032922	Biological Process	circadian regulation of gene expression	Interproscan
GO:0043153	Biological Process	entrainment of circadian clock by photoperiod	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-