Gene detail

Detailed information of Hgig_01428 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_01428	SET AND MYND DOMAIN-CONTAINING PROTEIN 5	Chromosome1	676225232	676292251	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_01428

ATGTGTGCAGCAGCAGCAGTGCAGGACAGGCAGCAGCTTCCTTCAGGAGTGGAGGAGCGAGTTGTGGACAGTGTCGTGGGTCGTGGCCTGTTCGCTACCCGGGCGTTCAGCGAGGGGGACGTCATATTTGAGGAGACGCCGATAGTTTCCTGCCAGTTCCTCCACAACAAGGACTACGGTTACAGCGCCTGCGACCACTGCCTCAGGCCGCTGGAGAGCAGCAGCAGCAACGTGCAGCGCTTGCTGAGCGACACTAGCATCAAGCTTCTATATCCTGAGTGCCAGTACCAGCCTCCACAGACAACCGCCCGCTGCCCTCGCTGCCAGGTGCAGTACTGTAGCGAGCAGTGCCTTACTGGCGCCAGGCAGCAGTATCATGCGACCCTGTGCACTCCTGCAGACCAGCCTAACCTCCTAACGCAGCTACAGCACGAGTGGAAACAGCACCACTATCCTCCCGAGACGCTGAGCATCATGCTGGTGGCGCGTCTTCTGGCTGGCGTGCTGCAGAGCGATGACCCGGAGCAAGAGAACGCCACCCTATTTCTCTTCTGCCACGCCACGCAAGACCTAGCGCAGAAAGCCACGCACAAGCTGCTGGGGGAGGGATTTGCGAGACACATTGACACTCTCAGGACCTTGCTGGAGCAGGCTATTGGAGCGCCAGTCATTGCTCAGGGGGTCGGCACGTCGCCCCTCGCACGATGGGTTAACAGCTGCGACGAGCTCGACTTGGCGCAAGACTGTAGAGACAAACTCGAAGCGTTCATCACTCAACTCTATGACAAACTGGAGGACCGTGTGGGCAACTTTTTGAACACAGAGGGCTCAGCGTTATACCGGGTGCAGAGCCGCATTAACCACAGCTGTCGACCGAACACCGAGCCAACATTCCCGCACCACAGCCATCGTCTCGTGCTGGAGGCGTGTGCTGACATAGCGCCAGGGGAGCAGCTGTACATCAGCTACCTCGACGACTGCGCCCTACAGAGGAGTCGACATTCTAGACACGCTCTTCTCAGCTCCACCGATGGCAACACTGGCGAGCTACAGCAGCCGCCCACACTGCTGGCGGAGGCTGGCCACCAACCACCTCCAATCACAAGTCCACCTACTCGCCAGGTGATGCTGTACAGCACCTTCAGTTGGGGAGGCTTGACCGGCAACGTGACGTTCTCCCTGCAACAGGAGGAGACCAGGAACCTGACAGTGGTGGAGGTGTCGCTAGAGCGTTCTCTGCAGCAGCAGACACAGGAGGAGGAGGAGTACCAGTGGGCCATACACGAGTGGCCCCTGAAATACGATAACGATAAACGATGCAACGGCGCCAACACAGCAGGCAAGATGCTGGTGGACTTGACGAAGGAGCTGGGTGTCTTGCAGCTGCCCATGTCTGGTGCTGTTGTGTTGGAGACGGAGAACCTGCCAATACTAGGACCAGACTCCATATGGGGGCGCTCCATTGTCTTCAAGGGGCCTGGGGGAAAAGCCTGCTCTAATATACACGGAGTCGGCGGTGAAGACACGTACGAAGCTCGGTTCTACATGCCAATGGGCGGTTCCATCTGGTTTCGATCTTGGCGGTGGTCGCTACCAGATGTCAGCGAAAGCACCCCCAACGATGAGGACAGTGCTAGAGGAGGAGGTCACAGTCGGACCGGTACGCAGGTCACAATCTTCGCTGATGTCTTCAACACTCTGGACGATGAACCAAAGACAACAGAGCACGGTTGGCTGCTCTACATTACAGATATCCTCGACAGAAGAGATTATGGCGTGAAATGCAACCACCTGACGAGAGTGTACGATCCTGTCGGCAAAGAGGAGTGTGACGAGAAAGGTTGTCCTCAGGGTCTACTCGGAAAACGACACGGATCTCTCAGGGTCAGCCCCAGAAGGATCACATCTGGGGTTGCTCCAAAATGCGAAAAACTTAAGGTTAAAACAGCAGTTGCTATTGTAAACACCAATGGAGTGACTGGAAAAATAACAGTGGAACAGGTTTCACCATTTACTCCAACTGATCTCACGCTTTACATGGGTGGATTAAATGGTACTGTCGACGAATTTAGCGTCCACGAAATGCCCTTTATAACACCGAAGCATCCGGGTGAAAATGCCTGTCAACAGACATTGAAGCGATACAATCCATACAAAGTTAGTAACAACGAAAGACCAGAACCTGGTCTAGGAACTCACGATCAGTATGATATTGGAGATTTGAGTGGTAAACATGGCTTACAAACTAGTGTTGATACTCTTGAGGCCACTGTCACTGACTACAACCTCCCTCTATTCGGTCACCAGTCAATAATGGGGCGATCAGTTGTGTTTAAGAAAGTGGGATGGCTGGCTTTGGGTATGTGGTAA

Transcript

Hgig_01428

TATTTATTGTGTAGCAAGACTGTTAAAAACCGCGTCTTTTTTGTATAGTTAATATATTATTTAATAAGCAGTTTGCTACGTACCCGCTACACTAGCAGTGGCAGAGTAGATTTATATGCAGTAATAACCGCTACAGACTGAATCAGTTAGGATTACTAATCTTAGTGGAAACTGTAGTTAAAGCCGGAATAATAATATCACTAGTACTAGTATCAGTTTAGGTGAGCGATGTGTGCAGCAGCAGCAGTGCAGGACAGGCAGCAGCTTCCTTCAGGAGTGGAGGAGCGAGTTGTGGACAGTGTCGTGGGTCGTGGCCTGTTCGCTACCCGGGCGTTCAGCGAGGGGGACGTCATATTTGAGGAGACGCCGATAGTTTCCTGCCAGTTCCTCCACAACAAGGACTACGGTTACAGCGCCTGCGACCACTGCCTCAGGCCGCTGGAGAGCAGCAGCAGCAACGTGCAGCGCTTGCTGAGCGACACTAGCATCAAGCTTCTATATCCTGAGTGCCAGTACCAGCCTCCACAGACAACCGCCCGCTGCCCTCGCTGCCAGGTGCAGTACTGTAGCGAGCAGTGCCTTACTGGCGCCAGGCAGCAGTATCATGCGACCCTGTGCACTCCTGCAGACCAGCCTAACCTCCTAACGCAGCTACAGCACGAGTGGAAACAGCACCACTATCCTCCCGAGACGCTGAGCATCATGCTGGTGGCGCGTCTTCTGGCTGGCGTGCTGCAGAGCGATGACCCGGAGCAAGAGAACGCCACCCTATTTCTCTTCTGCCACGCCACGCAAGACCTAGCGCAGAAAGCCACGCACAAGCTGCTGGGGGAGGGATTTGCGAGACACATTGACACTCTCAGGACCTTGCTGGAGCAGGCTATTGGAGCGCCAGTCATTGCTCAGGGGGTCGGCACGTCGCCCCTCGCACGATGGGTTAACAGCTGCGACGAGCTCGACTTGGCGCAAGACTGTAGAGACAAACTCGAAGCGTTCATCACTCAACTCTATGACAAACTGGAGGACCGTGTGGGCAACTTTTTGAACACAGAGGGCTCAGCGTTATACCGGGTGCAGAGCCGCATTAACCACAGCTGTCGACCGAACACCGAGCCAACATTCCCGCACCACAGCCATCGTCTCGTGCTGGAGGCGTGTGCTGACATAGCGCCAGGGGAGCAGCTGTACATCAGCTACCTCGACGACTGCGCCCTACAGAGGAGTCGACATTCTAGACACGCTCTTCTCAGCTCCACCGATGGCAACACTGGCGAGCTACAGCAGCCGCCCACACTGCTGGCGGAGGCTGGCCACCAACCACCTCCAATCACAAGTCCACCTACTCGCCAGGTGATGCTGTACAGCACCTTCAGTTGGGGAGGCTTGACCGGCAACGTGACGTTCTCCCTGCAACAGGAGGAGACCAGGAACCTGACAGTGGTGGAGGTGTCGCTAGAGCGTTCTCTGCAGCAGCAGACACAGGAGGAGGAGGAGTACCAGTGGGCCATACACGAGTGGCCCCTGAAATACGATAACGATAAACGATGCAACGGCGCCAACACAGCAGGCAAGATGCTGGTGGACTTGACGAAGGAGCTGGGTGTCTTGCAGCTGCCCATGTCTGGTGCTGTTGTGTTGGAGACGGAGAACCTGCCAATACTAGGACCAGACTCCATATGGGGGCGCTCCATTGTCTTCAAGGGGCCTGGGGGAAAAGCCTGCTCTAATATACACGGAGTCGGCGGTGAAGACACGTACGAAGCTCGGTTCTACATGCCAATGGGCGGTTCCATCTGGTTTCGATCTTGGCGGTGGTCGCTACCAGATGTCAGCGAAAGCACCCCCAACGATGAGGACAGTGCTAGAGGAGGAGGTCACAGTCGGACCGGTACGCAGGTCACAATCTTCGCTGATGTCTTCAACACTCTGGACGATGAACCAAAGACAACAGAGCACGGTTGGCTGCTCTACATTACAGATATCCTCGACAGAAGAGATTATGGCGTGAAATGCAACCACCTGACGAGAGTGTACGATCCTGTCGGCAAAGAGGAGTGTGACGAGAAAGGTTGTCCTCAGGGTCTACTCGGAAAACGACACGGATCTCTCAGGGTCAGCCCCAGAAGGATCACATCTGGGGTTGCTCCAAAATGCGAAAAACTTAAGGTTAAAACAGCAGTTGCTATTGTAAACACCAATGGAGTGACTGGAAAAATAACAGTGGAACAGGTTTCACCATTTACTCCAACTGATCTCACGCTTTACATGGGTGGATTAAATGGTACTGTCGACGAATTTAGCGTCCACGAAATGCCCTTTATAACACCGAAGCATCCGGGTGAAAATGCCTGTCAACAGACATTGAAGCGATACAATCCATACAAAGTTAGTAACAACGAAAGACCAGAACCTGGTCTAGGAACTCACGATCAGTATGATATTGGAGATTTGAGTGGTAAACATGGCTTACAAACTAGTGTTGATACTCTTGAGGCCACTGTCACTGACTACAACCTCCCTCTATTCGGTCACCAGTCAATAATGGGGCGATCAGTTGTGTTTAAGAAAGTGGGATGGCTGGCTTTGGGTATGTGGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR036423	Homologous_superfamily	Superoxide dismutase-like, copper/zinc binding domain superfamily	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46402	SET AND MYND DOMAIN-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006801	Biological Process	superoxide metabolic process	Interproscan
GO:0042799	Molecular Function	histone H4K20 methyltransferase activity	Interproscan
GO:0045814	Biological Process	negative regulation of gene expression, epigenetic	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-