Gene detail

Detailed information of Hgig_01103 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_01103	LYSYL OXIDASE-LIKE-RELATED	Chromosome1	574317828	574732009	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_01103

CTGAGGAATTCATCTATAAACATATGTGATCACCATTTGATTGAGTTGTCCCTTTCCTCCAAAAATCTTGGGCTGTCTTGGGACCGAACTCCCTGCACGATGCAAGATAGTATTCGATCTACCTGTTGTCGCAATTCTTCGCCTTCTTCCTTTCATTTACCTCTCTTTGGATCGCCAGTGTGGGAGATCGAGAGATCTGGGTGCCAACCTGAAGCCAGACATATTCGGCCGAAGTTTACTGAAGAAAATGTATTAAGTGACCGCATCAATGAAGTGTACAGCAACAGCAGCACTAACATAAACGATGGACGTATGGCGGTGACTTCCCAACCCCAACAAGCACATCAAGTCCCTCGTCACCACAGTGAAGCCCTTGAAGTTATTCGCACAACGAAGACCTCTGGTGTTCACCTCTTGGTGTGTCGTCCACCAGCCGGAACCATCGACCCTATGCCTCCCTCTCCAGTGCCTAACATGTCTTCACCAGGAGGCGGTGATGGCATAGGGATAAGCGCCAACACGAGTGGTGCTCTGGACATCCCATCGCCATCACCCTACCATCTAGCACCGTCGCCTGTACAGTCTGTCTGTGGGGAGTTCGAAATATCTTTAACGAAAGTTAAAGGGTCTCTTGGGTTCACGCTTCGGAAGCGGGACAACAGCGTCTTGGGGCACACGATCAGAACGCTGGTTCGGGAACCTGCCATATCTGACGGGAGGATAAAACCAGGAGACAAGATACTCTCTGTCAACTCAATGGATCTCTGCGGCATGAGCCATGAGGAAGCCATAGCTTTCCTTAGGACAACTCCAGAAACAGTCACAATTAGATTATACAGGGACGTCACCCAAACACCGGTTTCCCCACTATCACCTTCTGAATCCGAAGTCAATATTCTAAAGCCGAAACCTCTGCGTCAGGAGGCCATGGATATGTTATCAGATCTTGCTTTCCGTAAACGGTCTTCACCGAGCATGTCTCCGAGTATTAGTGGCGGGCACTCGGCTTCGCCAGGCAACCCAAGGAGGCGCAGACTCCAGAAGACTCCTACTCCTGACACCGCCAGAACGGGCGTTACCAACAGATTCGATTCTTTGGTCCGGAAAATAGAAGACACCCCTGAAGGATCTGCAGCCGAAGAACACCCCACCTTGTCAGTAAACTTGAGGACTGGCCACGACGCGTCTCCGTTCAGCAACAGAGACTCTTGTGCATCTTCAACTTCTCGAGAATCGGCCTTGGTTTCTCGTAACACTTCAAACGCCTCCACAGACACTAATTCACTATCAGAGTCTTCCGATTGTAGGAGAAAGAGACCAGATTTCCTTGATCTGGACAACAGACAAAGTTGTTCTAGGAAAACGCAGTTTACACCTCCTCATGAGGAACAGTACTCTTTTCCTTCTCCTTTATCCAGTAACGATAATCAATTTCATTCTATAGGATCAGTAGACTCCGCTCCAAATCTTGGCTCTACACAAAGCGTATCTCCCTCTTTTGCGCATACTCAGCCAGCATACCAGTCAGTTAACTTCGGTAATATACAGTATCAAAATAATGAACATGGCAGATTAAAGGAAACTGCCTCCGATTATACAATCAGTAGCTACATGAATGCAAATAAGACGCCTGAACAGAAGAGTGGACTCTTGAAATGGAAGGGAATGATGTTGCCCTCAGACGAAGAAGAAAACAACCATGGAGCCGATTCGAACACAGGGAAGACGACTGTCGGTTCTGATAATCAAAACGAACGGTCACATAGAATGAAGGAAGTGACCATGACACTGCAAAGAGGTTGGAACTCCCGGCTTGGGTTCAGCCTTCAGTCGGACGGTCAGGCCACCAAAGTGGTGGCCATATACTCTGGTTGTGTGGCCGCAAAGGACGGTAGACTCAAAATCGGAGATGAAATTTTGAAGGTTAATGACGAGGACGTCAGAAGCTGGGAAACTGAACGAGTCATCGATATGTTACGTAAAACACATGGCAAAATTGAGCTTAAGGAATCTTGCAGAAATAATGCAACCCCTAAATGCATTACTGTCAGGAAATTAAGAATGCCACCGACAAAAATTTCATTTTGTCGAACGGACCAAGTGCGTGTTGAGAAATCTGCGGACAGCGAGAGACCAGTGCGGCGGGTATATGATGGTATCTGGGGGGCGCAGTTGCTGTTTAAAAGGAGACGACGCAGACGCAGACGCAACAGACCGGAGGAACTAAACACCGTGCGTCGACGATTGCGTCATGGTGGTCGTAGAGTGCGTCATGCGAGTTCCAGGCGTCAAGAGTTCGTCAGGAGGAGGTTAAGGAAATTCAGGAACAGGAACGGGGATTACGAAGGGAAGACCAGACTGGTGGACGGCAGAGCAGAGTTTGAAGGTAATGTGGAAATCTTCCACGCCGGCAAGTGGGGCAACGTGTGCGATGACGAATGGGACCTGCGGGAGGGCGAGATCGTGTGCAAACTTCTTGGCTTCCCAGACGTAATCAAAGTCACCTACAACAGTCTATACGGCCACACCAGACATCAGTATTGGTTGGACAACTTGTTCTGCTACGGCAACGAGAAGAACCTAACTTCTTGTAGGCACGACGGTTGGGGCAAGCATGACTGCCAGAAAGATGAAGCAGCGGGTGTTGTCTGTATGACGCACTTCACCACTGAAGCACCCACGACACCAGCTCCTGTCATACCTGTTAAAGACGAGCCAGCGCCTGTTTTCAGGTCCAAACTACAGGAACTGGTGGGGGAAGACCAGTTGAAGGTGAAGCTGTCGGGTGGTCGCGTGCCAGAGGAAGGCCGAGTAGAGGTGATGTTCCCCGGAAAGGAGAGCTGGGGGGTCATCTGTGGTGATGGTTGGAGTCTGCTGGAGGCTGCCGTGGTCTGCAAGCAACTAGGAATGGGTTACGCACAGTCTGCTCCATCCACTGGATTCTTTGGCGGTAACATGTCGGACATCATACTAGGAGGCGTAAAGTGTCGAGGTAACGAAGCTCGTCTCGATTTTTGCCTGCACGAGATGCCTGAGGAACCTGGCATGGTGTCTTGTCCTGGACCTCCGGGAGACATTACCATTGCCGGAGTTACTTGTGTCAAAAAGATGGCTGACCTGGTGCCGGACACGTACGAGTTGTCACGTTCAGTTCATCTGGAGGACAAGCAGCTCTTCTTCTTGCAGTGCGCCATGGAGGAGAACTGCCTCGCATCCACGGCTTATGAGAAAGAGAAATCAGGTTATGGTTGGCACCTGGAAACCAGACGACTATTGAGGTTCACGGCCCGGATCGCAAACCAAGGAGACGAAGCCTTCATGCCCTTCTTGCCCAAGTCGCACTGGGAATGGCATCACTGCCACATGCACTATCATAGTATGGAGGTATTCGCCCACTACGACATCATGGACGGCAACGGCACCAAGGTCGCAGAGGGGCACAAGGCTTCGTTCTGTCTCGAAGACAACAACTGTCTGCCAGACATTGAGCCGGTGTTCAAGTGCGCTAACTTCGGTGACCAGGGGATAAGTCCAGGATGCACGGACACGTATGCGTATAACATCGACTGTCAGTGGGTAGACGTCACTGATCTAAATCCTGGTCACTATACGTTCAAGCTGGAAATTAACCCGGATTTTAAGGTTGGCGAGAAAAGTTTCGAGAATAACGCCGCTGTGTGCGAGCTCAACTACTCCCTCTACAGCGCATGGATCGGAAACTGCACGCTGAGCAGGCCAAGGGGAGACGAC

Transcript

Hgig_01103

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF01186	Lysyl_oxidase	Lysyl oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001190	Domain	SRCR domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR001695	Family	Lysyl oxidase	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR019828	Conserved_site	Lysyl oxidase, conserved site	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR050912	Family	Lysyl oxidase-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004720	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016641	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	Interproscan
GO:0018057	Biological Process	peptidyl-lysine oxidation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-