Gene detail

Detailed information of HS22376 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS22376	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	hadal_30	120310	122874	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS22376

ATGAAGGACTTGGAGCCGCCGGTCTCTGGGCGGACCCGGGCCAGAGCAGCTGGACCCAGAGTCTGGATCAAGAACCAAGCGGTTCGAGTGGGACTCGCTGAAACCCTGTGCACATATGTCATGATGGTAAGAGGCTCTACGGTTCTGGTTCTGGTTCTGGTTGACTGTGATCGCTTTGGACCCTCAGGCACACCGGAGCACGCTGCAGGcacatgggggccacatgggggccacgtgggggccacatgggggtcacatgggggTCAAGGGAGGACATCTAGTGTTACAGAGTCCTGGTCCAGCAGTGGACCACATGTTGAGAGACTGCTGTTACCAGAGGATcccccatagtgaggacccccccatagtgaggacccccccatagtgaggacccccatagtgagaacccccatagtgaggacccTGAGGTGACACATAAACACACGTGACACATGAGGAGCTTCCTGCTTCCTGAACACGTGTTTCCAGAGTCACTGcccccccactgcccccccccccccccACACACACACACACTTTCACTGAGTCCTGAGAGTTCAGCACTTTCAGTTCAACAAAAGCATTCATCTGTCATCTCTGCTCCTTCCTGAGATCTGCAGTTAACTAAACTAGCTGAcCCCCCCCCCCCTGGAGCTCCTGGaCCAGCCCCCCCCCCaTAGCTCCTGGTGACACaTGCCTCCCCCTCAGGTGCTGGGCCTGGGGTCCGTGGCCCAGGTGGTGACGGGGCGGGGCGCGTTCGGCCAGTACCTGAGCATCAACGTGGGCTTCGGACTGGGCGTCGCCATGGGGGTCCATGTTGGAGGGAAGGTCTCAGGTAGGGTGAAGCCCACTATGAAGCCCCCCCGGCCCCCGGTGGTCTCACGCTGCGTGTCCCCTCAGGCGCCCACATGAACGCCGCCGTGTCCTTCGCCCAGtgcgtgctgggccggctgcgctggcggctgctgccgctgtatgtggcggctcagctgctgGGCTCCTTCCTGGCTGCGGGGACCGTCTACGGGGTCTACTACGGTGAGGCCCCGCCCACCGGACACCTGCACGAGTCACAGAGGTGACACCCGCACACCGACTCCCCGCCTCTCCTCCACAGAAGCCATCCACGACTTCTGCGGAGGGAACCTCACCGTGACGGGCGCCACGGCCACGGCCGGGATCTTCGCCACCTACCCGGCACCCTACCTGTCGCTGCGGGCCGGCTTTCTCGACCAGGTAGGCCGCCGGCCCGGCCGCGGGTGAACTTGTTGTCGTGGCGACGCTCAGCCGCCGTGTGCCCGCGCTCCAGGTGTTCGGCACCGCCGTGCTGCTGCTGGGCCTCACGGCGCTGGCGGACCGGAGGAACCAgccggcggcgccgggcggcgagccgctggccgtcggcctgctggtgctggTCATCGGCGTCTCGCTGGGCAGCAACAGCGGCTACGCCATCAACCCCACCCGAGACATCGCGCCCAGGGTCTTCACCGCCATCGCCGGCTGGGGgggcgaggtgttcaggtacgggaggtgttcaggtacggggcgatgtgttcaggtacgggaggtgttcaggtacggggcgatgtgttcaggtacggtgatgtgttcaggtacggggcgatgtgttcaggtacgggaggtgttcaggtacgggcgatgtgttcaggtacggtgatgtgttcaggtacgggaggtgttcaggtacggggcgatgtgttcaggtacggtgatgtgttcaggtacggggcgatgtgttcaggtacgggaggtgttcaggtacgggcgatgtgttcaggtacggtgatgtgttcaggtacgggaggtgttcaggtacggggcgatgtgttcaggtacgggcgatgtgttcaggtacggtgatctgttcaggtacggtgatgtgttcaggtacgggaggtgttcaggtacggggcgatgtgttcaggtacggggcgatgtgttcaggtacggggcgatgtgttcaggtacgggaggtgttcaggtacggggcgatgtgttcaggtacgggaggtgttcaggtacggtgatgtgttcaggtacgggaggtgttcaggtacggggtgatgtgttcaggtacggggcaatgtgttcaggtacgggcgatgtgttcaggtacggtgatgtgttcaggtacggggcgatgtgttcaggtacggtgatgtgttcaggtacggggcgatgtgttcaggtacggggcgatgtgttcaggtacgggaggtgttcaggtacgggcgatgtgttcaggtacggtgatgtgttcaggtatgggaggtgttcaggtacggggcgatgtgttcaggcacggggcgatgtgttcaggtacggggcgatgtgttcTGATGTTGTTTTCTGTGCAGGTCGGGCAGCGGGTGGTGGTGGGTGCCCCTCGTGGCCCCCCCCATCGGGGGGGTGcTGGGTGCAGGGCTCTACAGGCTCCTGGTAGAGATGCACCACCCCCCCCTCCCCCCCCAGCGGGAGACGGTAGAGGAGAGATTCCCTCTGGAGGGACCAGAGAACATCTGCACTGATGTGTGTGTCATGAAGGACTTGGAGCCGCCGGTCTCTGGGCGGACCCGGGCCAGAGCAGCTGGACCCAGAGTCTGGATCAAGAACCAAGCGGTTCGAGTGGGACTCGCTGAAACCCTGTGCACATATGTCATGATGGTGCTGGGCCTGGGGTCCGTGGCCCAGGTGGTGACGGGGCGGGGCGCGTTCGGCCAGTACCTGAGCATCAACGTGGGCTTCGGACTGGGCGTCGCCATGGGGGTCCATGTTGGAGGGAAGGTCTCAGGCGCCCACATGAACGCCGCCGTGTCCTTCGCCCAGtgcgtgctgggccggctgcgctggcggctgctgccgctgtatgtggcggctcagctgctgGGCTCCTTCCTGGCTGCGGGGACCGTCTACGGGGTCTACTACGAAGCCATCCACGACTTCTGCGGAGGGAACCTCACCGTGACGGGCGCCACGGCCACGGCCGGGATCTTCGCCACCTACCCGGCACCCTACCTGTCGCTGCGGGCCGGCTTTCTCGACCAGGTGTTCGGCACCGCCGTGCTGCTGCTGGGCCTCACGGCGCTGGCGGACCGGAGGAACCAgccggcggcgccgggcggcgagccgctggccgtcggcctgctggtgctggTCATCGGCGTCTCGCTGGGCAGCAACAGCGGCTACGCCATCAACCCCACCCGAGACATCGCGCCCAGGGTCTTCACCGCCATCGCCGGCTGGGGgggcgaggtgttcagGTCGGGCAGCGGGTGGTGGTGGGTGCCCCTCGTGGCCCCCCCCATCGGGGGGGTGcTGGGTGCAGGGCTCTACAGGCTCCTGGTAGAGATGCACCACCCCCCCCTCCCCCCCCAGCGGGAGACGGTAGAGGAGAGATTCCCTCTGGAGGGACCAGAGAACATCTGCACTGATGTGTGTGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230	MIP	Major intrinsic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000425	Family	Major intrinsic protein	Interproscan
IPR023271	Homologous_superfamily	Aquaporin-like	Interproscan
IPR050363	Family	Major Intrinsic Protein/Aquaporin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43829	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006833	Biological Process	water transport	Interproscan
GO:0015204	Molecular Function	urea transmembrane transporter activity	Interproscan
GO:0015250	Molecular Function	water channel activity	Interproscan
GO:0015254	Molecular Function	glycerol channel activity	Interproscan
GO:0015267	Molecular Function	channel activity	Interproscan
GO:0015793	Biological Process	glycerol transmembrane transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016323	Cellular Component	basolateral plasma membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-