Gene detail

Detailed information of HS22331 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS22331	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	hadal_28	579947	581975	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS22331

ATGACCCTCAAAGAAGCATTCCAAAGCTCCGCCTGCTTGTTGTTTCCCATTCGGTGTGTGGCGTGTGGTcgtcgtggccccgttttgaccccgtcgtggctccgttgtggccccgtGACTCTCCTGTGTGACTCTAACCTGAAGCTTGTGCTTCCACAGGTGAGGCTTCAAGTTCAGAATGTGGACCGACCTCTGTACCGcGGGACGTATCACTGCTTCCAGTCCATCATACGGCAGGAGTCGGTACGGTTCTTCTACATTTCTCTTCATGTTTTACTgGTTTTATGTATTTTCCTTTTTTTTTAGGCTGCACATGTCATGGCTGTTAAATAACGGGTTAGTCTTTTCACCATGTGCTCTCgATGCCGAGGTTGAGACTGGCCACTGCTCTAAAGCCTCCAGTTACAGTCCCACCTCTCAACATGCAGCAGGCCGTGATCAGCCAGCATGTTCCCAACATGGGGTGTTGTGGCTGAGAGGGGGAGGGGCGGGGGTCActgagggcCTTTTTCTGCATGGGCTAAATAAAGCTTTGCACCTCGTGCCATTTGAGCtGAGTGGTGGAGGCGTGGTcTCACTTGGAGGCTTTGAATTGTATTTCTtCTACAGTATAATATGCAAATTGTAAGTGGCTATTTGTTCCCTCGCATTCATCTATgTGGAAATTACATtTACAAAATCAATGACCTGTTGATCTTTCTTTATTTTGCCGTGTATCACACGTCTGTATGCGTGTCCCTCGCAGCTGAAGCTGGCTGTCAGGAGTCAaattcagttcatttgtttagcccattttcacaaattacaaattcccctgagtgctttacaatctgtacatagacatccctgacctttgacctcacatgggatcaggaacaactcccaaacaacccttcagggtaaaaggtcagaccccttgaggagagaacagaggaggatccctctccaggatggacaggtgtaatagatgtcatgtgaccagaaggaatcattacacacacattaaaacacaggaacaacacaatgaatatgacagtggatgaagagttggtagtcggcatattccaccatccagacctccaccttccatcagatggaggtagagaggaggagtgggcggagcctcaacagggccatAAAACATtccaaagcgacttacaatctgttgcattctcacgccggagacacggcgacggggagcgactcggggtcgcgtgtcttgctcaaggacacgtcgactcggcgggattctgcagcctccctcagcggtccCAGTAATCTGTCTCTGTGTCTGCAGATGCTCGGTCTCTACAAAGGCCTCGGCTCTCCGATGATGGGCCTGACCTTCATCAACGCCATCGTCTTTGGCGTCCAGCGCAACGCCATGCGCAAGCTCGGCCGCGACACGCCTCTCAACCAGTTCCTGGCCGGCGCGTCCGCCGGGACCATCCAGTGTGTCATCTGCTGCCCGATGGAGCTGGCCAAGACGCGCATGCAGCTGCAAGGGACCGGAGAGAAGAAGTCCAAGAGGAAGCTGTACAAGAACTCCCTGGACTGCCTGGTGAGGATCTACAACAAGGAGGGCATCCGAGGCATCAACCGCGGCATGGTGACCACGCTGCTGCGCGAGGCCCCGGGCTTCGGCGTGTACTTTCTGGCCTACGACACGTGGACGCGCTACCTGGGCTGCGAGCCGGACGACCCGTACATGATCCCCAAGCTGCTGTTCGCCGGCGGCATGTCCGGCATCGCCTCCTGGATCTCCACCTACCCCGTGGACGTGATCAAGTCGCGTCTGCAGGCGGACGGGGTGGGCGGCGTCCACCAGTACAGCGGCATCATGGACTGCGTCCGGCAGAGCTGGAGGAAGGAGGGGTGGCGGGCCTTCACCCGGGGGCTCACGTCCACGCTGCTGCGCGCCTTCCCGGTCAACGCCACCACCTTCGCCACCGTGACTCTGTTCCTCCTGTACATGCGCGAGGGAGACGAGTGCAGCGGCCAGGACGCCGAGCCGCAGCCGACCGGCATGATGACCCTCAAAGAAGCATTCCAAAGCTCCGCCTGCTTGTTGTTTCCCATTCGGTGTGTGGCGTGTGGTcgtcgtggccccgttttgaccccgtcgtggctccgttgtggccccgtGACTCTCCTGTGTGACTCTAACCTGAAGCTTGTGCTTCCACAGGTGAGGCTTCAAGTTCAGAATGTGGACCGACCTCTGTACCGcGGGACGTATCACTGCTTCCAGTCCATCATACGGCAGGAGTCGATGCTCGGTCTCTACAAAGGCCTCGGCTCTCCGATGATGGGCCTGACCTTCATCAACGCCATCGTCTTTGGCGTCCAGCGCAACGCCATGCGCAAGCTCGGCCGCGACACGCCTCTCAACCAGTTCCTGGCCGGCGCGTCCGCCGGGACCATCCAGTGTGTCATCTGCTGCCCGATGGAGCTGGCCAAGACGCGCATGCAGCTGCAAGGGACCGGAGAGAAGAAGTCCAAGAGGAAGCTGTACAAGAACTCCCTGGACTGCCTGGTGAGGATCTACAACAAGGAGGGCATCCGAGGCATCAACCGCGGCATGGTGACCACGCTGCTGCGCGAGGCCCCGGGCTTCGGCGTGTACTTTCTGGCCTACGACACGTGGACGCGCTACCTGGGCTGCGAGCCGGACGACCCGTACATGATCCCCAAGCTGCTGTTCGCCGGCGGCATGTCCGGCATCGCCTCCTGGATCTCCACCTACCCCGTGGACGTGATCAAGTCGCGTCTGCAGGCGGACGGGGTGGGCGGCGTCCACCAGTACAGCGGCATCATGGACTGCGTCCGGCAGAGCTGGAGGAAGGAGGGGTGGCGGGCCTTCACCCGGGGGCTCACGTCCACGCTGCTGCGCGCCTTCCCGGTCAACGCCACCACCTTCGCCACCGTGACTCTGTTCCTCCTGTACATGCGCGAGGGAGACGAGTGCAGCGGCCAGGACGCCGAGCCGCAGCCGACCGGCATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002067	Family	Mitochondrial carrier protein	Interproscan
IPR018108	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR050567	Family	Mitochondrial Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005289	Molecular Function	high-affinity L-arginine transmembrane transporter activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006810	Biological Process	transport	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:1990575	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-