Gene detail

Detailed information of HS22330 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS22330	TRYPTOPHANYL-TRNA SYNTHETASE	hadal_28	571964	575186	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS22330

ATGACAGACTGTCATGGAGATGGCGAAGGAGACAAAAGTCCTCTGGAGATCTACGAGCAGCTGGCAGCTCAAGGAGACGAAGTCAGGGTCTTGAAAAACGCGAAAGCAGAGGAAGTAAGTGCTCGTAATCTAACTACAAACAGTGATTTCACTCTGGGTTAGTTAATACAGAGGTGGTTCATCTAatgttgttattaatgtctaatgttaagcgtctttgagtattttgaaaatcgctatagaaatgtaatgtattattattaATGTACTTGAGCAAATCAGTGAGCTGGTCTGGTTAATGGTCAGTTTCAATGGAGCATTTTTTTTCTTTTACTGTCGATTTAATCCACACAACAAACTATCAACAGTTTTCAAAGGGACTTTTTTTTGTACTATTGGTTAAAAGTAGTTCTATTGAAAACGTTGAATATTGAGATCCATAGATTGTCCACAGTAACCTGGACATTGTATGGAAGGAGTCGTAGAAACCGAGAGCTGAAACCAACAGCTAACTGCACGGCTTTGTATTTTGGGTGAACAACCCCTTTAAAATACAATGAGAATAGCTTTTAAACCAACACTTTTTTATTGcGATTGTTTTACACTGACACTTTTTATTGTGATTTGGCTGCTTTATCTTAAGTTGTTGGGTTCCTCAGGCTGAAATTGCTGCTGCTGTCCAGATGCTGCAAAAGATGAAAGTAAACTACAAACAGTTGACGGGTCAGGATTACAAAGCAGGCTGTCCGCCCTCAGACGACTCTGTTGCCCCTGACAACAGGCCAGCAGCAGATGGGGCGAACAACGAAGACACTGTTGACCCATGGAACGTTTCCACCGACAGCGCCAAGGGAGTGGATTACGACAAACTCATCGGTACGATTAAAAGTCGCTGCAAGCGTGGCCTTCCCACAAAGAGCTGGATTTCTATTGCTACGTTTTCGATATATTTTCAATCATAAGGTCAACATGTGATTTGTGCTATAGGATAGCAACACAATTCCCATTGTGTCATGTCTTTCCTTAGTGAGGTTTGGCAGCAGTAAAATTGACATGGAGCTGGTGGACAGAATAGAAAAGGTATCGGGACAGAAGCCGCACCACTTTCTACGCAGAGGGGTTTTCTTCTCGCACAGGTCAGCGTTGAAATAACTGAAAATGTGTCATCTGTGTTTGAGAATTTCACAAGTTATTGTGCGACGTCAACATGAAAACGTCCACGCCGTACCTCCGTGACCTTTCgTTCCCGTTTCTCCACTAAGTAAAACATGTTGGTGAGAGTTTCTGGGAGAATGAGACGTCAATATATAACTTTCCTCTTATCTCTGTTCCCGGCAGAGATATGCATCAGGTGCTTGATGCGTATGAGAAGCACAAGTCCTTCTACCTTTACACTGGCAGAGGTCCGTCGTCAGAGGCCATGCATGTCGGTCACCTCATCCCCTTCATCTTCACCAAGTGAGTTCTCCCTCTAGAATGTTTATTAATCACAAAGAGCTATTAAAGGCAAATGCAAGTGTTAAATCAGAAAAGCACAATCTTAAATTCTGGTTATCAAGTTGGAGTCGAAACTGACTTTCTTGTTGCAGATGGTTGCAGGATGCATTTGACATTCCTCTGGTGATCCAGTTGACGGACGATGAGAAGTATCTGTGGAAGGATCTAACACTAGAAGAGTGCCACCGCTTTGCTGTGGAAAATGCAAAGGACATCATTGCCTGCGGCTTTGATGTGAACAAAACCTTCATCTTCTCTGACCTCGAATACATGGGGTAAAACCTCTTCCTGACTGACGCCCCTGATGCTGAGGCTTCCTCGGATGCGTAGAAGCCTTGCCATATTTATTATTTGTTCACATAAAAGCAGATCATTTCTTAATCTGGTCAAGAGTTTTGTGTTTTAATGTGTTCATTTTATTTAACCTTCTGCAGAGCATCCCCTGAATTCTACAGAAATGTGGTGAAGGTCCAGAAACATGTGACGTTCAACCAGGTCAAAGGCATCTTTGGATTTACCGACAGCGACTGCATCGGTAAGGCAGCGGCAACAACTGACGACTGAGGCTTCCTAATTCTAAAAAATAAAGACGGATCATTCGCCGATTTGCTTTCATAGTCAAGCCAGCCGCTGAAAAatgtactctcgtttagATTTACAAAATATGTCGGTGTAATCCtGtTcTTTGTTTTTGACATTTCTTTCCGATCCTGAAGTTGTGTTCACACCTTGCTGTTTCTTCATGGGGTTTGTCATTTTCTGTCCATCCAGGGAAGATCAGCTTCCCAGCCATCCAGGCAGCCCCATCtTTCAGCAGCTCGTTCCCACAGATCTTTAAAGGCAGAACGGATGTTCAGTGTCTCATCCCCTGTGCAATAGACCAGGTCAGGACACCCTGACAGTAATAGATGACACCATAAAGGGTCATATTTCACAACGACGTGtATATATATCTATCCTCTCGTTCATCCAGGACCCCTACTTCAGGATGACCCGTGATGTCGCTCCAAGGATCGGCTACACCAAACCAGCCCTGCTGCACTCCACCTTCTTCCCAGCCCTGCAGGGGGCGCAGACCAAGATGAGCGCCAGTGATGCCAACACCTCGATCTTCCTCACTGACACTCCCAAGCAGATCAAAAACAAGGTGCCCCTGTGTCTAGGCATTGCTAATTTAAATGTATATTATGCGTACGTGCTTACTGATCAGTGTTCTCGTTACTCACAGGTCAACAAACATGCCTTTTCGGGAGGAAAAGACACAGTGGAAGAGCACAGGAAGTATGGTGGAAACCCAGATATAGACGTTGCCTTCATGTACCTGACCTTCTTCCTGGAGGATGATGAACAGCTGGAGAAGATCAGACAGGTGAAGATGTGGATGACAAAGAAAACAAATGATAGTTTCCCAGCTTTATTTATTGTGCTAATCCCGCTCTTTTCTCTGTTCTTTTTGTTTTCCTGATTCTCTCCACGGCTTTGACACTCATTCCGGTTTCTTCTTCCTCCCTTGAACTCTTCAACTCCCTTTCTGCACACTCCTCCTCTTCCTTTAAACGTCCCTCTGCAGGATTACCTCAGTGGAGCTCTTCTCACGGGAGAACTGAAGAAGCTTTTGATTGAGACGCTGCAGCCGATCATTCTGCAACATCAAGAGCGACGCAAACAAGTCACAGCCGAGACAGTCAAAGAGTTCATGACCCCCAGGCCTTTAAACTTTAACTTAATGACAGACTGTCATGGAGATGGCGAAGGAGACAAAAGTCCTCTGGAGATCTACGAGCAGCTGGCAGCTCAAGGAGACGAAGTCAGGGTCTTGAAAAACGCGAAAGCAGAGGAAGCTGAAATTGCTGCTGCTGTCCAGATGCTGCAAAAGATGAAAGTAAACTACAAACAGTTGACGGGTCAGGATTACAAAGCAGGCTGTCCGCCCTCAGACGACTCTGTTGCCCCTGACAACAGGCCAGCAGCAGATGGGGCGAACAACGAAGACACTGTTGACCCATGGAACGTTTCCACCGACAGCGCCAAGGGAGTGGATTACGACAAACTCATCGTGAGGTTTGGCAGCAGTAAAATTGACATGGAGCTGGTGGACAGAATAGAAAAGGTATCGGGACAGAAGCCGCACCACTTTCTACGCAGAGGGGTTTTCTTCTCGCACAGAGATATGCATCAGGTGCTTGATGCGTATGAGAAGCACAAGTCCTTCTACCTTTACACTGGCAGAGGTCCGTCGTCAGAGGCCATGCATGTCGGTCACCTCATCCCCTTCATCTTCACCAAATGGTTGCAGGATGCATTTGACATTCCTCTGGTGATCCAGTTGACGGACGATGAGAAGTATCTGTGGAAGGATCTAACACTAGAAGAGTGCCACCGCTTTGCTGTGGAAAATGCAAAGGACATCATTGCCTGCGGCTTTGATGTGAACAAAACCTTCATCTTCTCTGACCTCGAATACATGGGAGCATCCCCTGAATTCTACAGAAATGTGGTGAAGGTCCAGAAACATGTGACGTTCAACCAGGTCAAAGGCATCTTTGGATTTACCGACAGCGACTGCATCGGGAAGATCAGCTTCCCAGCCATCCAGGCAGCCCCATCtTTCAGCAGCTCGTTCCCACAGATCTTTAAAGGCAGAACGGATGTTCAGTGTCTCATCCCCTGTGCAATAGACCAGGACCCCTACTTCAGGATGACCCGTGATGTCGCTCCAAGGATCGGCTACACCAAACCAGCCCTGCTGCACTCCACCTTCTTCCCAGCCCTGCAGGGGGCGCAGACCAAGATGAGCGCCAGTGATGCCAACACCTCGATCTTCCTCACTGACACTCCCAAGCAGATCAAAAACAAGGTGCCCCTGTGTCTAGGCATTGCTAATTTAAATGTATATTATGCGTACGTGCTTACTGATCAGTGTTCTCGTTACTCACAGGTCAACAAACATGCCTTTTCGGGAGGAAAAGACACAGTGGAAGAGCACAGGAAGTATGGTGGAAACCCAGATATAGACGTTGCCTTCATGTACCTGACCTTCTTCCTGGAGGATGATGAACAGCTGGAGAAGATCAGACAGGATTACCTCAGTGGAGCTCTTCTCACGGGAGAACTGAAGAAGCTTTTGATTGAGACGCTGCAGCCGATCATTCTGCAACATCAAGAGCGACGCAAACAAGTCACAGCCGAGACAGTCAAAGAGTTCATGACCCCCAGGCCTTTAAACTTTAACTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00458	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan
PF00579	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000738	Domain	WHEP-TRS domain	Interproscan
IPR001412	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR002305	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002306	Family	Tryptophan-tRNA ligase	Interproscan
IPR009068	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10055	TRYPTOPHANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004830	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006436	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-