Gene detail

Detailed information of HS22327 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS22327	NOTCH LIGAND FAMILY MEMBER	hadal_28	499746	503733	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS22327

GACAAAGAAGaGGGGGGGGgGGTGCTGCTGGATATTACGATGCATCTCACAGCGGTGGTCTTCATGGTGGTCGCGACGGGCATCGCCAAAGGTAATCAGAGATGTTATAATCAATCCACTGAGACAACTGTCAGGGGGGGGGGGGGGGgTGAAAGTATAACGGATCGGATGCATATGATGATTGCTGTGAATGTTTTATGTGTCGCTAAAAACATTTTTTTGATGCAAATAGTTGATGCCCctttcttacctttcttacctttgttctccttgttatctttgttatccttgttatctttgttatcctGTGATCCGACTCAAAGGTTGGGACTGCAGCGCAGGGTGCAACACAGAAAATGGGTTTTGTGAGAAGCCAGGGAAGTGCAGGTACGAACACGACTCCAGATTCCTGTGTAGATTAAATCTTACATCCAGTGGACTTTTAAGACCTGATTTCCATAAATCTCTGTCACTGTAAATGTCCCTCAGAGAAACGCAATCACGATCCGGCCAGCTGGATCCTTCTGTTGCTTTCCTCTCATGTGTTTGTCACTTTTGGTTTGTGTTACGTCAACTCCCACATCATCCCTTTGTGTTTGAACAGTGTGAAGCATTGTCATCTGAACAGATATCTCACAGATTCTGTTTGCAGAATATGCCCAGTTTATTCTGGCAAATGCTCCTGGATCTACTCTAGAGcCCAAATAATCATACATCTCTGTTAGTATGTTGGTAATTTTACCAATTAATGCATTAAGCAGATAACGCAAACACGACTGTTGACTCATTTCCCCTTTTAGGGAAAAGCATGCCGACATTATGGGGACCAGGGCAGGACtgatgtagtgaatatggaacgatcaacggccagaatacacgctgctaaagaaagaaccgtctcatccgggtccacggcttgaagcaacattcaactagatatataattgtaatataattgtaacataatataatacattcccttttataatagctggagatgtatgaggggggtgggtgtcaccaacagtggcaggggggtacatttacattgtgtgtgtgtgtgtatgtactaggatatgATAGatagaaagatagatagatagatatatactttattaatccccaaggggaaatttgtcgtcacagtagcagcaccaataaactaaacacacaagaataaaaaataaaatataacataaaaaaacagggatgaaagatatagaagtatacaaagtaaaatataaaataaaatatatatgtatgtatatatacaacatatatgcatacacaatacacaatactaatgacaaattaaaataaatattaaatattaaatatagacagtgtgcaaaatgcaaagtgtgtgtatgtgtgtagtgtaaatgaaatgtgtgtatgtgtgtagtgtaaataaatgaaatgtgtgaagtgcagatcaacatagtgtggatatgaagttattattgtaTgatatgatgtacctttattcgtcccaaagtggggacatttcaaaaatgtgtatatatgcacatacatatgcaagtatgtgcatatatatgtcaatatgtaagcaggtttttgcatgtatacccgtatttatatatattctttttatttgtacttgttatttgtatgtgtttgtctgagtaccattgtgttcgtacaatgtgtacatgttttcctttgcatgtgcatatctctaaaaccagtaaaagatgtgatcacaaTGAAAGAGCAGGGCTGCGgAGCTCAGGTTTCCCTTTCCTCTCGCTCAGGTGCAAACCCGGATGGCAAGGAGAGAACTGTGAGCAGTGCGTGTCCTTCCCCGGCTGCCGGCACGGCGCGTGTGAGAAGGCGTGGCAGTGTGTGTGCGAGGAGGGCTGGGGGggCAGCCTGTGTGACCGAGGTGAGCTCAGCTCCCCTGACACTCGCATCTCGGCCTCAAACACTCTGTGACAGGCCAAAGGTCGGCGTGAGCCCCGGAGCCCCGAGGGCCCCGAGGGCCGCAGGAGGAATGCTCAgCGTGATGTTTAGcGGGTCGACGCTCGAGAACAACACACCTGACTCAGCAAAGgAAACGTGTGGttcatgatgAACGCTGAAGACACACACTACTACTGCCGGAAAGGAAAatgtatatattcatactgcaataaatacatacattacattatatatatagggactaaaaattacagacacacatgctgaaaatgaatattaatatataaatacaattatatatatatatatatatatatcataacagagacacacatgctgaaaatgaatattaatatataaatacagcaataaatacatacattacattacattatatatatatatatatatatatcataacagagacacacatgctgaaaatgaatattaatatataaatacagcaataaatacatacattacattacattatatatatatatatatatatatatatatatatatataaatacagcaataatacacacatgctgcttttgagctttgatgcaagacacatgattgtaaaacgtcgacattgatTCACTGAGACAATTAAAAGTTGAAGCAGTGCAAAAGTCACATTTCCATTTCAGACACTCATTTAAATCAAGCGATGTCGGGATTAATCCGACAGTATCTATAATGAATATTATCACCTGAAAATGATGTGCTGCCACTGAAGCAGTAACAGGTAGAGGTCCAGGATTAGTCAGCGCCGATGGAAGGTGTGATGAACCCCTCTGTCACACAGGTACTGAACATCCCCGGTTTGCATCGCGGCTCTATGAGACATAACGAGGTCCACTTCTGATAACAATATCTGTGTGCTTGTGATTAACTCATGAGACTAACTCAACTGCTCCAGACTAACTCCTCTGGTCACCGGCTCTGGAACAACGTGGGCTGAACCTTTGTGGCCCTGGGGAATAGCTGTGCAGGCACATCGTCCGATTATTCTGCTATCAGCTTTGTCCTACATTCCAAACCATCGTTTTTATAAAAGTCCACTCGGGAGCAACCTCTTAGGAGATACAAATGTGTATTTCTTGTTTGGCTTCAGCACACACAGTACATCTCGTATTCCGCTCGCCTGTGAAACGATGTCGCCCGTGTTCTCACTTCTGTTCTCGGTGACAAGATGCCGCGGGGGAGCCGCAAAGTGGGAACAGAAGAAGAAGGAAGAAAGCAGGCGGAGGGACAGGAAGTGAGAGCGAGAGCACACACACACaTcTAAAACCAGCATGCTTCTTTTGTCTaTTTTAAACAACAGATACCCGCCTCTGCTCCTCCGGGCCTTGTGTTCGTAATGCCACCTGCATAGAGACAGGGGAGGGCGGATACCTGTGCATCTGTCCCCATGGATACGCTGGTGAAGACTGCCTCCTGAAGAGAGGAGCGTGTCTCACAAACAGGTACCAGCACCCTTTGATGAAGTTCTATTTGTATAAAGGAAGACTTACAGTCTTATCTCAATGTGTTTGTCATTTGGAGCGATAATCAATACATGGAGCGATGTCTGTCGGCTCTCTTTGTATCCCCGAGGGAGCCAATCGGACTGCAGCTCTCTTTTATTTGATACGTTTCCAACACAAACACGAGCATGTTATAATGTGTTGGCTGGAAAGTTTCCAACTTCGTGAAAAGGGAAAACTCCAGTTGCTCAAGCTcaggggtccccacactgttccctgtgagggccacatcactgttccctgtgagggccacatcactgttcccttctctgagggggcggggtcagtgtgtcacagaaacagtgagatgatctcagggtgcctacatgtaaacatgtattgttttccagaaagccacataaccaaatattaataaccgcaggccccgcctacgggagcaagttggggttaagagtcttagtcaagaagaagccgacatgaaTAAAAATCGATATCATAATATCAATAAGCGTATTATTGAGTTGAAAGCAGCAACAGCAATGAATTGAGACAAAGAAGaGGGGGGGGgGGTGCTGCTGGATATTACGATGCATCTCACAGCGGTGGTCTTCATGGTGGTCGCGACGGGCATCGCCAAAGGTTGGGACTGCAGCGCAGGGTGCAACACAGAAAATGGGTTTTGTGAGAAGCCAGGGAAGTGCAGGTGCAAACCCGGATGGCAAGGAGAGAACTGTGAGCAGTGCGTGTCCTTCCCCGGCTGCCGGCACGGCGCGTGTGAGAAGGCGTGGCAGTGTGTGTGCGAGGAGGGCTGGGGGggCAGCCTGTGTGACCGAGATACCCGCCTCTGCTCCTCCGGGCCTTGTGTTCGTAATGCCACCTGCATAGAGACAGGGGAGGGCGGATACCTGTGCATCTGTCCCCATGGATACGCTGGTGAAGACTGCCTCCTGAAGAGAGGAGCGTGTCTCACAAACAGgccccgcctacgggagcaagttggggttaagagtcttagtcaagaagaagccgacatgaaTAAAAATCGATATCATAATATCAATAAGCGTATTATTGAGTTGAAAGCAGCAACAGCAATGAATTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF21700	DL-JAG_EGF-like	Delta-like/Jagged, EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-