Gene detail

Detailed information of HS22256 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS22256	3-KETOACYL-COA THIOLASE, PEROXISOMAL	hadal_26	1291685	1296781	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS22256

ATGTTCCTCCGGCCTGCAGGCTGTGTTCAACATCGCAGGTACAAGCTCtcacatcacagatatatatatatatcatttatttattgtatatatattatttataaatatttattatatatacattatatatatatatatgtttatacatattttttatgtattaatatatatgtaaacatatatatattatttatatagaatttatatatatatatgtgtgtgtgtatatatatatatatgtgtatatatattagatatattaattcattatatatattatttattatatatatatattattcatatatttgaatatatatacaggactgtctcagaaatttagaatattgtgataaagttctttattttttgtaatgcaattaaaaaaacaaaaatgtcatgcattctggattcattacaaatcaactgaaatattgcaagtcttttattcttttaatattgctgattatggcttacagcttaagaaaactcaaatatcctatctctaaatattagaatatcatgaaaaagtatactagtagggtattaaacaaatcacttgaattgtctaattaactcgaaacacctgcaagggtttcctgagccttgacaaacactcagctgttataaatcttttttttacttggtctgaggaaatattaaaattttatgagataggattttagagttttcttaagctgtaagccataatcagcaatattataagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttgttcttttaattgcattacagaaaataaagaactttatcacaatattctaattttctgagacagtcctgtatatatcaatatgtttatatatatatatatttgaatatacaggtatatacatacatacgtgtgtgtgtgtaggagccatcaggagcGGATCCATTGACCTCGGCCTCGCCTGTGGGTACGTTTCATTTGTCGGTGAAATACAGAACGgTTCAAATCAAAGCATGTGGTTTTTTTCTTCTCTTTACCAGAATATCTCTCTCCCTCTCCCTCTCAGTGTGGAGAGCATGTCTCTGGGTGAGATGGGGAATCCAGGAGATTTGAGCTCCAGGCTGACTGAGGTCGACAGAGCCAGAGACTGCATGATCCCGATGGGGTGAGGCCTCAGAccccccccCCCCCGAAGGCTCCAGCTGAGCACCATTGACGTTCGGACTGTGACGCCAATTTAAAATTTGAAATGAAGCAGTTAAAGTGCAGAGTTCCCGTTTTATTTAAATAGATAAAACAACAATATGTACGGTCCACATGTTGTTTGTTTGTTTGTGCAGCATCACCTCAGAGAACATCGCAGAGAGATTCGGGGTCTCCAGAGAAAAGCAGGACGCCGTCAGCTCGCAGCAAAAGTGAGCAAGAGAACGTTATTTTTTTACAACTAACAGTAGTATCAGGAAAATGTAGCAAAAGTAAAACAATTTTtatatatatattctttttagtaagtatttatagattatatttgtatatatatattttttgttatttatatatatatatatatttaatgtgtatatatatatatatatatttaatgtgtatatatatattgtatttatttatataatgtatatatcttatttatattatataaaaatgatatgcactaccgttcaaaagtttgggatcacttagaaatgactttatttttcaaagaaaagcactgttttttcaataaagataacattaaattaatcagaaataccctctctacattgttaatgtggtaaatgactattctaggtggaaacgtctggtttctaatgaaatatctccagaggtgtatagaggcccatttccatcaactatcactccagtgttctaatggtacattgtgtttgctaatcgccttagaagactaatgtctgattagaaaacccttgtgcaattatgttagcgcagctgaaaacagttatgctggtgatatatgctatacaactggccttcctttgagcttgaagtttgtagaacaaaattaatatttcaaatattaatcattatttctaaccttgtcaatgtcttgaatatattttatattcatttgataaataaaagtgtgatttttcatggaagacacaaaattgtctgggtgatcccaaacttttgaacggtagtGtatatatataaattaattaatatataactatatttaaatatatttatatgtatttatatatgtatttatgaatagattattttatttatatatttatatacatatttataatttaaattatatatatatatatatgtgtatatattatatataaaatatttatataataaatatatataaatgagtaatatataaatattatGGTGGATATTTCTAAACGCCCCCACAGAGCGGCCCGTGCGCAGAGCTTGGGTCTGTTCGAGCGGGAGATCGTTCCGGTCACCACGCGGGTCCAGGACGCCGAGGGCAGCGAGCGCGTGGTGACGGTCTCCAGGGACGAGGGGGTCCGGGCGGGGACGACTGTGGCGGGACTGAGCAAGCTGAGGCCGGCCTTCAAACCGGACGGCACCACCACGGCAGGTCGGTCGGCCGTCGGGTCTGAGTGAGTCCGATTCCCCCTCTCAGCTgCCGTGACTCAAACCCCGCCCCCACGGTTCTGTCTCAGGTAACTCCAGCCAGGTGAGcggggCAGCGGCCGTGCTGATTGGACGCCGGGCTGCGGTCGAGGCTCTGGGTCTGCCGGTCCTGGGAGTCCTGAGGGCCAGCGCGGTGGTGGGGGTCCCCCCGGACCTGATGGGGATCGGACCGGCGGTCGCCATCCCTGCAGCTCTGGAGCAAGCGGGTAAGACtgaagtactagtcttcagtacttttatactactttatatttctcagagggaaatattgtatttttttactgcacttgatttatttgataCTTAAATCACTCGATTTTTGACAATTGGACAATAATAAAAAATATTGTCATCAGATAAAAAAAATGTTTTAatgtgtgtgtgtgtatatatatatatatatatataaatacataatatattctaaagcaggtcattccacaccagtacttttggtacattttaAATGTtGGAAGTAGTTTTACTTTTATTCAAGAAATAGATCTGACTTCTTCCACCGCTATGTTATATTTAAAGGGTCTGAAATCAGAAGTTCTCCAAGTGGATGTTCTGTTGTAACGCTAGTAAATATAGTGATGAGTATTTAATGCTTGTGAAAGCTGATGGAGACGCGTTCCTCCTCCAGGACTCACGGTGGCCGATATCGACGTGTTTGAAATCAACGAGGCCTTCGCCAGCCAGGTGAGTTCACGCCTCCACGCCgACGCTGCTGCTTGAAGGAGATCCGTCACTTTTATGAATAAAGTATATTTATAATATATATCGCGACACtTGCTTCTTTTTAAGGGTCAACTTAACCCTAAACCCACTTAGTGGATCTGTAAAGCCAAGTTTAAACTCCCTGTAAGTGAAGATGGAAAAGAAAcTTAGAAATGACATAATCTGTAAAAATCTGAACTTTTGTAACTTGGCATGACTGTCACAAATAGTTAATTAATTAATTGGGAAAAAGGATAATTTGCTCACTGatatatgtatacataaattaatatgtttctatatatatatatatacattatgtaatatGAAATTATTAAATGTatatacagtgcatccggaaagtattctggccttcactttttccacattttgttatgttacagccttattccaaaatggattaaattcattattttcctcaacattctacacacaacaacccataatgacatagtgaaacctgttttttgcacatttttgcaagtctgttaaaaataaagaacgaaaacataacatgtacataagtattcacagcctttgccatgacactcaacatgtagctcaggtcctgtttccaccgatcatccttgagatgtttgattggagtccacttgtgctaaattcagttgattggacatgattgagaaaggcacacacctgtctatataaggcatcacagttgacagtgcatatcagagcataaaccaagccatgaagttcaaggaattatctatcgacctccgagacagaattgtatcgaggcacagatctggcgaagggtacagaaagatttctgcagcattgaaagtcccaatgagcacagtggcctccatcaaccggacatggaagaagtttggaaccaccaggactcttcctagagccgcccagccagactgagcgatcgggggagaagggccttcgtcagggaggtgaccaggaacccgatggtcactctgacagagctccagcgttgttctatgaagagaggagaaccttccagaaggacaaccatctctgcagcactccacaaatcaggcctgtttggtcgagtggccagacggaagccactcctcagtaaaaagcacctgaaggactctcagaccatggaaaccaaattctctggtctgatgaaacacagattgaactctttggcctgaatgccaagcgtcatgtctggagggaaccaggcactgctcatcacctggccaacaccatccctacagtgaagcacggtggtggcagcatcatgctgtggggatgtttttcagcgggaggaactgggagacgagtcaggattgagggaaagatgaatgcagcaacgtacagagacatcctggatgaaaacatgctccaaagcgctctggacctcagactggggcgacggttcatcttccaacaggacaacgccccgaagcacacagcccagataacaaaggagtggctttgggacgactctgtgaaggtcctggagcggcccagccagagccccgacttgaaccccattgaacatctctggagagatctgaaaatggctgtgcaccgacgctccccatccaacctgatggaacttgagaggttctgcaaagaagaatgggagaaactgcccagaaacaggtgtgccacgcttgtggaatcagacccaagaagacttgaggctgtaattgctgccaaaggtgcttcaacaaagtattgaATGTTCCTCCGGCCTGCAGGCTGTGTTCAACATCGCAGTGTGGAGAGCATGTCTCTGGGTGAGATGGGGAATCCAGGAGATTTGAGCTCCAGGCTGACTGAGGTCGACAGAGCCAGAGACTGCATGATCCCGATGGGCATCACCTCAGAGAACATCGCAGAGAGATTCGGGGTCTCCAGAGAAAAGCAGGACGCCGTCAGCTCGCAGCAAAAAGCGGCCCGTGCGCAGAGCTTGGGTCTGTTCGAGCGGGAGATCGTTCCGGTCACCACGCGGGTCCAGGACGCCGAGGGCAGCGAGCGCGTGGTGACGGTCTCCAGGGACGAGGGGGTCCGGGCGGGGACGACTGTGGCGGGACTGAGCAAGCTGAGGCCGGCCTTCAAACCGGACGGCACCACCACGGCAGGTAACTCCAGCCAGGTGAGcggggCAGCGGCCGTGCTGATTGGACGCCGGGCTGCGGTCGAGGCTCTGGGTCTGCCGGTCCTGGGAGTCCTGAGGGCCAGCGCGGTGGTGGGGGTCCCCCCGGACCTGATGGGGATCGGACCGGCGGTCGCCATCCCTGCAGCTCTGGAGCAAGCGGGACTCACGGTGGCCGATATCGACGTGTTTGAAATCAACGAGGCCTTCGCCAGCCAGattgaactctttggcctgaatgccaagcgtcatgtctggagggaaccaggcactgctcatcacctggccaacaccatccctacagtgaagcacggtggtggcagcatcatgctgtggggatgtttttcagcgggaggaactgggagacgagtcaggattgagggaaagatgaatgcagcaacgtacagagacatcctggatgaaaacatgctccaaagcgctctggacctcagactggggcgacggttcatcttccaacaggacaacgccccgaagcacacagcccagataacaaaggagtggctttgggacgactctgtgaaggtcctggagcggcccagccagagccccgacttgaaccccattgaacatctctggagagatctgaaaatggctgtgcaccgacgctccccatccaacctgatggaacttgagaggttctgcaaagaagaatgggagaaactgcccagaaacaggtgtgccacgcttgtggaatcagacccaagaagacttgaggctgtaattgctgccaaaggtgcttcaacaaagtattga

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00108	Thiolase_N	Thiolase, N-terminal domain	Domain	Interproscan
PF02803	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002155	Family	Thiolase	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan
IPR020616	Domain	Thiolase, N-terminal	Interproscan
IPR020617	Domain	Thiolase, C-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR050215	Family	Thiolase-like superfamily, Thiolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43853	3-KETOACYL-COA THIOLASE, PEROXISOMAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003988	Molecular Function	acetyl-CoA C-acyltransferase activity	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0010124	Biological Process	phenylacetate catabolic process	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-