Gene detail

Detailed information of HS22156 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS22156	IP21249P	hadal_25	1571117	1574915	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS22156

GCCGTGCAGCGGCTATCGCAGCTGTGCGTGTGGATCAGGATCACTTGGGGGTCACCGGGAGACCTGGACGCACCGGATCCACCGGAACCGCCTTCAGCCTGCAGGAACCAGCAGGACACGCGTTCCTTCAGGAAGAAGAAGAAGAAGCGCGCGCGAGAGGAGGAAGCTGCACGTGAGTCTGTCTGCCCTTGTGTGATGCGTTCAAGGACTGCAGGTTTATTGTAACACTGCGTTTGGCTTTGCTGTGTTTACCAACAATAACTTTATTATTTTATTATCTCATACCTTAAACTTGATGAACTATTATATTCACATATTGATGTATATTTAATATATATATTAATAATATTAATTAATAACATTAAGTTTCAACAGTTTCTTATCTAtaatatatatagaaatattatatatatatataaataatattaattaatactttattaagccttaactgtatatatatatatatattaataatatatatatacaaataatattaattaataatatattaagcctaatctgtatatattaatatatatatataatattaatatatataaataatattaatgaataatatatcaagctttaactgtttcctatttatatatatatatatctgtatatgtgtatgtatatatatatgtgtgtatatgtgtgtatatatatatatttatatatatatgtatatgtgtatatatatatgtgtgtgtatgtatatatatatttatatatatatgtgtgtgtatatatatatatatatatgtgtgtgtatgtatatatatatttatatatatgtatatctgtatatatatagatatatgtgtgtgtgtgtatatatatatatatatatatatatgtgtgtgtatgtacactaccgttcaaaagtttgggatcacttagaaatgtccttatttttcaaagaaaagcattgtttttttcaatgaagataacattaaatcaatcagaaatatactctatacattgttaatgtggtaaatgacgattctaggtggaaacgtctggtttctaatgaaatatctccagaggtgtatagaggcccatttccatcaacgatcactccagtgttctaatggtacattgtgtttgatcatcgccttagaagactaatggattattagaaaacccttgaaaacccttgtgtaattatgttagcacagctgaaaactgttttgctaatgagagaagctataaaactggccttcctttgagctagttgattatctggagcatcacatttgtgggttcgataagactctcaaaatggccagaaaaaaagaagtttcatgtgaaactcgccagtctattcttgttcttagaaatgaaggctattccatgcgagaaattgcaaagaaactgaaaatgtcctccagcggtgtgtactactcactacagagagcagcaccagcgggctgtaaccagagcagaaagagaagtgggaggcccggtgcacaactcagcaagaagacaagtacattagagtctctagttggagaaataggcgcctcacaggtcctcaactggcagcatctttaagtggtacccaaaacgccagtgtcaacgtcgacagtgaagaggcgactccgggatgctggccttctaggcagagtggcaaagaaaagccatatctgagactggccaatcaaaagaaaagattggtatgggcaaaagaacacaggcattggacagaggaagattggaaaaaggtgttctggacagatgaatccaagtttgaggtgtttggatcacacagaagaacatttgtgagacgcagaacaggtgaaaagatgctggaagagttcctgacaccatctgtcaagcatggtggaggtcatgtgatggtctggggctgctttggtgctgggaaagtgggagatttgtaccaggtaaagggattttaaataaggaaggctatcactccattttgcaacgccatgccataccctgtgggcagcgcttgattggagccaatgtcctcctccaacaggacaatgacccaaagcacacctccacattgtgaagaactcttgagggaagaagcaggcagcttgctgtctgtaatggagtggccagcacagtcaccagatctcaaccccattgagctgttgtgggagcagcttgaccgtatggtcctcaagaagtgcccatcaagccaatccaacttgtggaggtgcttcaggaagcgtggggtgacatttcaacagattacctcaacaaactaacagctagaatgacaaaggtctgcaatgctggaattgctgcaaaaggagcattctttgacgaaagcaaagtttgaagaaaaaaattaatacttcaaatacaaatcattatttctaaccttgtcaatgtcttgactatattttatatacattttgcaactcatttgataaataaaagtgtgagttttcatggaaaacacgaaattgttctgggtgatcccaaacttttgaacggtagtgtatatatatatatatgtatatctgtatatatatatatatatatgtgtgtgtgtcctaaagtgttgctgatcttctgtgacgTtttgtttgtttgtttagttgtttacatgttatttgtCCCTGAAGCCGGCGTCAGCTGTTTCCTGTCTCTCCGCCCCAGAGTCGGGGAGTCAGGAAGCCCTGGAGGGTCAGAGGTCAGAGGTCAGAGCGATGCTGCAGCTGTGCCAGGTGACCAGCGCGCTGTTCATCAGCAACGCGCGCTCGGCCTGCAGCGACGAGCTCCTCCAGCAGGCGGCGGTGACGCTCTGCATCAACGTGTCGCGGCGCCAGCCGTTCCCCGGCTCCGCCGCCGTGGCCAAGCTGCGCGTGCCGGTGTACGACGACCCGGCCGAGGACCTGTACGCCCACTTCGACCGCTGCGCCGACGCCATCCAGAGGGAGGCGGAGCTCGGGGGCCGCGGCGTCGTGTACTGCAAGAACGGGCGCAGCCGCTCGGCCGCCGTGTGCGCCGCCTACCTGATGAAGCACCGCGGGCTGTCGCTCGGCGCCGCGCTGCAGGTAGCCTCTGTGACCTCCGGTGACCCCTGGTCACACAAACGCTGCGTGGGCAGAAACTGAAGCGCAGAGTATCTGTTACCACGGTAACCTCCACAGAGTGcacccggtagccccgcccctaaagcgccccctgctttatggtctgactctaaacgatgacatcatgctgtatagaagaagacttgaaactagagactgagacataaactcatgtttacaatgtttactgagggaagtagagtcacgatatagacttctatacaaccagaggagtcccctggtggtcaggagagagaaggcagctttaacacatgaagcatagtcttctatacaaccagaggagtctccccctggtggtcaggagagagaaggcagctttaacacatgaagcagagacttctatacaaccagaggagtcgccccctggtggtcaggagagagaatgcagcttcaacacatgaagcattgacttctatacaaccagaggagccccctggtggtcaggagagagaatgcagctttaacacatgactcatagacttctatacaaccagaggagtcgcccccaggtggtcaggagagagaatgcagctctaacTCTTGTTGTCGTGTTTATTTGACTCTTTATTGACTTCTTCTTGTGTTTCCTCCAGAAAGTGAAGACGGCTCGTCATGAGATCGACCCGAACTCCGGCTTCAGGTGTCAGCTGCAGAGATACgagcaggagctgaagaagagacgaggacggagagagagaGCCGTGCAGCGGCTATCGCAGCTGTGCGTGTGGATCAGGATCACTTGGGGGTCACCGGGAGACCTGGACGCACCGGATCCACCGGAACCGCCTTCAGCCTGCAGGAACCAGCAGGACACGCGTTCCTTCAGGAAGAAGAAGAAGAAGCGCGCGCGAGAGGAGGAAGCTGCACAGTCGGGGAGTCAGGAAGCCCTGGAGGGTCAGAGGTCAGAGGTCAGAGCGATGCTGCAGCTGTGCCAGGTGACCAGCGCGCTGTTCATCAGCAACGCGCGCTCGGCCTGCAGCGACGAGCTCCTCCAGCAGGCGGCGGTGACGCTCTGCATCAACGTGTCGCGGCGCCAGCCGTTCCCCGGCTCCGCCGCCGTGGCCAAGCTGCGCGTGCCGGTGTACGACGACCCGGCCGAGGACCTGTACGCCCACTTCGACCGCTGCGCCGACGCCATCCAGAGGGAGGCGGAGCTCGGGGGCCGCGGCGTCGTGTACTGCAAGAACGGGCGCAGCCGCTCGGCCGCCGTGTGCGCCGCCTACCTGATGAAGCACCGCGGGCTGTCGCTCGGCGCCGCGCTGCAGAAAGTGAAGACGGCTCGTCATGAGATCGACCCGAACTCCGGCTTCAGGTGTCAGCTGCAGAGATACgagcaggagctgaagaagagacgaggacggagagagaga

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR020420	Family	Atypical dual specificity phosphatase, subfamily B	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR052103	Family	Dual Specificity Protein Phosphatases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45961	IP21249P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0017017	Molecular Function	MAP kinase tyrosine/serine/threonine phosphatase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-