Gene detail

Detailed information of HS21980 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21980	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	chr24	27411176	27413860	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS21980

Transcript

HS21980

atggagcgttatatcacggactctgtggctgctggtattattcgtccctcctcctctcctgtcggtgccgggttcttctttgtagtcaagaaggacaagtcactacgaccctgcatagactttcgggggttaaataatatcacggtaaaaaacaagtatcctttacctctcctcacctcggcttttgaacctctccaggaggcgaccctgttttccaaattagaccttcgaaacgcctaccatctggtccgcatccgacagggggatgaatggaagacagcgtttaacactccattaggtcattttgagtatctggtcatgccttttggtctctctaacgccccagccgttttccaggctatgataaatgatgtcttacgtgactttttaaaccgctttgttttcatctacctagacgacatcctgattttctccaggagtcaggaggaacacgagaaccatgtctgtagggtcctacagagactgctggagaacaagctctacgtcaaggcggagaaatgtgagttccaccaagaccggatcacctttctgggctatatcatcagccagggaagggtggaggcagaccctgggaagatcagcgccgtggtggagtggccggttccaacgacaaggagggagcttcagaggtttttgggttttgccaatttttaccgtcgcttcatccggaacttcagtaaggttgctgcacctctttccaaactcacctcaattaacatctcgttctgttggactccggaggctaacagagctttcatcaaactcaagtccctgttcacctcagctcccatcctcattcagccagacacagagagacagtttgttgtggaggtggacgcgtctgatacgggagtaggagcagttttgtctcagacggctggtcctgataacatccttcatcccgttgcttttttttcacgtcgcctctctccagcggagcgcaactatgacgttggtaacagggagcttcttgccgttaaattggcactagaggagtggagacactggctcgaaggcagcaagcagcccttcctggtctggacggaccaccaaaacctctcatacatccagtctgcgaagcgactgaactcccgacaagccaggtgggctctgtttttctgtcgtttcgacttttgcctcactttccgtcctgggtccaagaacgtcaagcccgatgcgctgtccaggctgtactcccctgactctcccgagcctccagaggctccaatccttcccaagagttgtgttgtaggcgcccactcttgggagattaataacaccatcctggaggcattgagagaacaaccagacccgggtaatggtcctccgaaccgtcggtttgttcctgatgctgcccgctccaaggttctgcagtgggtccataattcccggttctcaattcaccctggaggaaaccgtactctttctctcctgaaaagacatttctggtggcccacgatcagcagggacactctggagttcgtttctgcctgtcccacgtgttccaggagtaagtcctcccaccagttacctgcagggttgctccagccccttccaatccctagtcgtccttggtctcacatcgccctggattttgttaccggcctgcccccctcccagggcaacaccactatcctcacggtggttgaccggttttccaagtcggctcacttcatagctctccctaaactcccgtcagctctggagaccgcccaactcctcacggatcatgttttccggttgcatggtatcccttctgacattgtctctgaccgtggtccccagttcacctctcgagtctggaaggagttttgtcagtccctgggagcctcagtcagtctgacttcgggatatcacccccaatcaaacggccaaacagagagagccaatcaggacatggagtcagctctccgctgcatcaccgacaagatcccgtcaacttggagctcgatctcacctgggtagagtactcccacaacgctctcacttgctccgctactggtctctcccctttgaggcttctttgggttaccagccaccctgttccccgaagaggagcgagaattagctgtcccctcagtccagcagcatgtgcgtcgctgtcagaagatctggagagatacacgatctgccctcctccagacttctgtacggaaccagcggtctgccaaccgtcacagaagggccgctcctccttacgccccaggccagtcagtctggttgtcctcccgcaacattcctctcatctcagagtcccggaagctttccccacgcttcattggtccttttcccatcgttaggatcattaacccttccgcagtccggttgaagcttcctagaactctgagaattcaccccactttccacgtgtcccagattaagctggttcacaccagtgaattgagccctccggctctaccccctcctcccgcccggattctcgacaatcaccctgtctatacggtgcaccgccttgtggacgtcagacgacggggcaggggtttccagtacctggtggactgggagggttatggcatcgaggagcgatgttgggtccctcgttcccgtatcatggacccaatcatggtcagggcctttcacagggcccatccgaacaagcctggtggtcgccaggtggctcccattgaggggggggtactgtGAatggagcgttatatcacggactctgtggctgctggtattattcgtccctcctcctctcctgtcggtgccgggttcttctttgtagtcaagaaggacaagtcactacgaccctgcatagactttcgggggttaaataatatcacggtaaaaaacaagtatcctttacctctcctcacctcggcttttgaacctctccaggaggcgaccctgttttccaaattagaccttcgaaacgcctaccatctggtccgcatccgacagggggatgaatggaagacagcgtttaacactccattaggtcattttgagtatctggtcatgccttttggtctctctaacgccccagccgttttccaggctatgataaatgatgtcttacgtgactttttaaaccgctttgttttcatctacctagacgacatcctgattttctccaggagtcaggaggaacacgagaaccatgtctgtagggtcctacagagactgctggagaacaagctctacgtcaaggcggagaaatgtgagttccaccaagaccggatcacctttctgggctatatcatcagccagggaagggtggaggcagaccctgggaagatcagcgccgtggtggagtggccggttccaacgacaaggagggagcttcagaggtttttgggttttgccaatttttaccgtcgcttcatccggaacttcagtaaggttgctgcacctctttccaaactcacctcaattaacatctcgttctgttggactccggaggctaacagagctttcatcaaactcaagtccctgttcacctcagctcccatcctcattcagccagacacagagagacagtttgttgtggaggtggacgcgtctgatacgggagtaggagcagttttgtctcagacggctggtcctgataacatccttcatcccgttgcttttttttcacgtcgcctctctccagcggagcgcaactatgacgttggtaacagggagcttcttgccgttaaattggcactagaggagtggagacactggctcgaaggcagcaagcagcccttcctggtctggacggaccaccaaaacctctcatacatccagtctgcgaagcgactgaactcccgacaagccaggtgggctctgtttttctgtcgtttcgacttttgcctcactttccgtcctgggtccaagaacgtcaagcccgatgcgctgtccaggctgtactcccctgactctcccgagcctccagaggctccaatccttcccaagagttgtgttgtaggcgcccactcttgggagattaataacaccatcctggaggcattgagagaacaaccagacccgggtaatggtcctccgaaccgtcggtttgttcctgatgctgcccgctccaaggttctgcagtgggtccataattcccggttctcaattcaccctggaggaaaccgtactctttctctcctgaaaagacatttctggtggcccacgatcagcagggacactctggagttcgtttctgcctgtcccacgtgttccaggagcttctttgggttaccagccaccctgttccccgaagaggagcgagaattagctgtcccctcagtccagcagcatgtgcgtcgctgtcagaagatctggagagatacacgatctgccctcctccagacttctgtacggaaccagcggtctgccaaccgtcacagaagggccgctcctccttacgccccaggccagtcagtctggttgtcctcccgcaacattcctctcatctcagagtcccggaagctttccccacgcttcattggtccttttcccatcgttaggatcattaacccttccgcagtccggttgaagcttcctagaactctgagaattcaccccactttccacgtgtcccagattaagctggttcacaccagtgaattgagccctccggctctaccccctcctcccgcccggattctcgacaatcaccctgtctatacggtgcaccgccttgtggacgtcagacgacggggcaggggtttccagtacctggtggactgggagggttatggcatcgaggagcgatgttgggtccctcgttcccgtatcatggacccaatcatggtcagggcctttcacagggcccatccgaacaagcctggtggtcgccaggtggctcccattgaggggggggtactgtGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-