Gene detail

Detailed information of HS21853 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21853	LONG-CHAIN FATTY ACID TRANSPORT PROTEIN	chr24	22917011	22922039	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21853

ATGGGTGGCGTCACAACGGGCCTCGCTGGGCTCGGGGCGGACAGCCTGCTCTCTCTCCCCGGGCTCTGCAGCCTGTTGGCGGGGCTGGGGCTCCTCATGTTCTGGACGGGTTCCTGGAAGTTCCTGCATGTCGCTCTATGCACCATCAAAAGAGACTTAATGTAAGGATTTAAGAATAAAGTATTCTtgtgtgtgtgtgtaatgtgcatgtttgtgcatgtgtCCACCCCATTCCTATGTCAAACTTTCTTTCATCGCCCAATGTTCAACTCTTCTCTACCTACAAGGTGCCTGGTTGCTATCCTGAAGGTGAGGCTTTCCATTCGCCGACATCTGAGAAACAGAAGCACCATCCCTGCCCTGTTTGCCCAGACGGTGTCACTGCACCCGCACAAAGCTGCTTTGATCTACGAGGCTACAGGAGAGGTGAGGACTCAAAGGAGGATGACAAATGAATGCAGTGTGACTGAGCTGGATGGACTCGCCACATTTCCATCTTCATTTGAATCCAGGTTTGGAGTTTCAaGGAGCTGCAGGATCGATGCCACGCTGTGGCTCACTGGGCGCTGGCCCAGGGGTGGGCCGAGGGAGATGTGGTGGCCCTGTACATGGAGAGCCATCCCATGGTGGTGGCTCTATGGTTGGGTCTGGCTATGATCGGCGTAGAGGCTGCGCACATAAACCACAACCTTCGACAGCATTCACTCGTGCACTGTGTCGGCGTGTCTGGTGCTCGGGCGATGGTCTTCGGGGCGGAGATGAGAGATGGTAGGAACATGTGGCTGCAGTGAGGCAGCTGAAGGGGCTGATCGGTATGCCGGGTAtACGCAGAcGGCGGTTTACGGTCATATCTGTAACACACaGCTTTTGATTGTGTCCCAGCGGTGTCAGAGGTGAGTGGCTCTCTGCAGCCCCACATGGTTTGGTTCAGCAGTGGTGAGCCGGACCGTGAAGAGGAGCTCTGCAGCCTCCAGgcccagaacctggacgcccagaacctggatgcccagaacctggacgcccagaacctggacgcccTGCTGGAGCGCTCGCCCAAACACCCACCGCGATACACCCTCAAGAAGGGCTTCAACGGTGAGGCTCTGCGGACTGTTGCCGGCATGAGTTTGGGCATGAGCCATAACAAGTCCTCATGTTACATGATATCAGTTGTGATTGCAACAACATCTTTTTCTTAgcaagtatttgcttgccggagggaagtgtgcatgaacacacacgtacacacacacacacGTCGAACAAATCATCAACTCATTAATTCCAAAGAAACACTGAAAATCATCCAACATTCAAATGCAGCTTGAAACTTACTTTGCTTTTTATTTGGTATGATACACTTCCATTCCTTTTGAAGTGATATATTAGGTGATACATCTGTTCATTCACTCCTCTTATCGACTTGCTTATCATCCGTATTGTTTTTGTCTTTGTTATTTCACGGCATTCCTAAGTTAATACTCTTCAAGTCTTGGCGTGTGCAGGCTGTCAGAGAAACAGGGAATATGGAAGGGGAGACAGAAACATGTTAAGGAATGAAGGGGTGTGGGGGGGCGGGGGTCCGGGTGCATTCCACACACCTGGAACTCTGGCAAACAAACAAAAGACATTGTATGAAGGTGAATAAATAAGTAGTAAACTTTCCCTGTAAAATGTGTTGCCCTTTGGCCCTTCTGATGAGGGCCAAAGGGCCACAAAATAATCTAAAACTCACTTAAAGTAACGACTCCCTTCCCCCCCCCcTGTCCActctctctctctctctctctccatctctctctctccctctctctctctctctcCATGCAGACAGACTCTTCTACATTTACACTTCTGGAACGACGGGCATGCCGAAGGCGGCCGTGGTGGTGCACAGTCGGTGAGCTTCACTGTGATCTCATAAGTTTAAAGAATGTGGAACGCACATTTTTTTACAAGTAGCAAGTCGTAGGAGGAAACGCGGTCTTACAACCGAGCCCATATGGCATCAACTCTGATGATTTCCCCACACACATCTGCATTTATGTATCTCATTTGTCATTGTCTGGTTAGGATAGAATAGGATATTAATTTATTCATCCCAAGGGGGGAATTTTGTAATTTGCAGATCTTATTGCAGTTACAAGTGTTTTAATTAAAATGAGGGCCATGAGGATTTCTGGTGATTGTCTGGTGACGATGGATATCAGTCGCTTTATTCCATCTTTCTTCTCAGGTATTTTCGCATCGCTGCCTTTGGTTTCCACTCCTTTGGTTTGCGTCGTGATGACGTCATCTACAACTGTCTTCCCTTGTATCATTCAGCAGGTAGGCATCACTCTCTCCCAGCCATACTCGTTTTTTACTGTCACTTCCCACATTATATCATCGTGTCTTTCTTAAATGCTTCATTTAATGTTGTCGTAGAGGTTGGAGACGATTCCTTTCTTAATGAAACAAACCGGTAGGTTTCCTTTTTAATATTCTGCTTCCACTGACTCAGATCAGTGGTTACATCTGGTTTATTGACAAATATCAGACCAGAATCTGTTAAGCTTCTGGCAAAAAAAGAATAAGAACAAGCTGAACCATTGTCATTGTGCCTTTCTGTATGTACAGTGTAGAGcagtggttcagatgagagtatgtgtacccctgggggcatgtgaaggcactccaggggctacgtgagatttgtaaaaagaaaatatttaaaattagcatccattaaaaaaaatcattcaacaatagaatgtaagggtaagttcatcaacagaattgtatatattctatattaaatcagacactgatggcacagcgctgtgtattTAAGAAaaaatggctggtaagagtgtaaaaatgtctagttagggggtcaaaatggctagttatggggtacaaatgactagttagggggtacaaatggctatttagggggtacaaatggctagttatggggtataaatggttagttagggggtacttggctgaaaaaatatttcacagggggtacatcactgaaaaaaggttgagacccactgGTACAGAGTATATGTGTATTCGTGTGAACACATGAATGTGTTACCAGGTACCATCATGGGtGTCGGCCAGTGTTTGCTCTTCGGTGTGACCGTCGTGGTCAGAAGGAAGTTCTCGGCCAGTCGCTTCTGGGACGACTGCGTCAAACACAACTGCACTGTGAGTTCAGCCCGGGTACCGACCAGCGCCCGGCTGCAGGCCGCTTGACCGGCTGATCTCCTATTTTTTTTGTCAAGGTAATTCAATACATCGGCGAGATTTGCCGCTACCTGTTGGCCCAGCCGGTCCGTTCATCCGAGGCACGTCACCGGGTGCGTGTTGCCATTGGCAACGGCCTCCGTCCGTCTGCGTGGGAAGAGTTCGTCCAGAGATTCAGAATCCTGCGAATCGGGGAATTTTATGGCGCCACAGAGTGCAACTGCAGCaTGCTCAACATAGACGGAAAGGTGTGTGACGTCTCAGACCTATTCAAGGGATAGGAGGAGAGTGTTTTTCTAAACGTGTCTCACATACCTGTGCGTCCTACATGTACGTCCAGGTGGGGGCGTGTGGCTTCAACAGCCGCATCCTGCCCAGCTTCTACCCCATCAGACTGGTCAGGGTGCAGGAGGGGAACAaAGAGCTGCTCAGGGATCCACAGGGCCTCTGTATACCCTGTATGCCTGGTGAGAGcacacaaacacacacacacacacacacggtcacatttaatacagtgaatatgtctgtctttGCAGGTGAGCCGGGCATGTTGGTAGGACGCATCAACCTCACGGATCCACTCAGGAGATTTGACGGCTACGCTGATAAGGACTCTACCAATGACAAAATAGCGCACAATGTCTTCAAGATGGGGGACTCTGCGTACGTCTCAGGTATGCATAAGTTTTCTTGGTTCAATTTAATAAAAGATGGTGACGTACTCAGTGAGGTTTAATAAAAGATGAGGGAAATACTTTTAATAAAAGAGAGTCAGTTACAGTCTAGAGCACGGTCAGAACAATAATGATGTTTAGAAATACACAATAtaagacaGCTgAGGCTTTAAATATAAATGTGTACGTCTGTGATTCACTGTGATCGCGGATTGGGAACCTGCCCCTTGTGTTTACCACCTTGCCACATAGATAAGCAAACAGTCATCAGATTAAAGTCAAAACTGTACTtGTGAGTCATCACCACTACAGACTCGTCTTTGTCCTCTACTCTGTTATCCCCTCCGGGCACGATGACAATGATTGTTATTATTCTGTCTCCGTCTGTCCGTCTCTGTCTCTCAGGTGACCTGCTGGTGATGGATGATTACGGCTACATTTATTTCAGGGACCGTAGCGGCGACACGTTTCGTTGGCGAGGGGAAAACGTTTCCACCACGGAGGTGGAGGGGGTCCTCAGCCGCCTGcTGGGACACACAGTCGTAGCCGTCTACGGAGCGTCCGTCCCAGGTAGAGACGAGACGAGACGGAATGGGTCGATGTGTGAATGAAGGACAAAAGATGACGcGCTTGATGTGTGGTTAGAGCCAatcgtctgcggttcattgcctcacctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaggtgtggaggggaaggctggcaTGGCAGCAATAGCTCACGCGGGAGGCCGGTTTGACCTCGATGCGTTCTTGATCGCCGTACAGAAAGCTCTGCCTTCCTACGCACGCCCCGTCTTCCTGAGACTCATGCCATCTGTTGACACTACAGGTGAGACGCCGATGCAAGGGcacgcacacacacacacacacGTTCACAAAGTCGCAGGTGAACTAAAGTTCCCACTTTTGTTCCCAGGTACCTTTAAAATCCAGAAGACTCGGCTGCAGAGGGAAGGATACAAGTCGCGAGACTCGAGGGAGGAGATTTATTTCCTGAACAGTCGCGCTGGCCGTTACGAGGCTGTTACTGATGAACTGTATGAAGCCATCGTGGAGGGGAGGGTGCGTCTGATGGGTGGCGTCACAACGGGCCTCGCTGGGCTCGGGGCGGACAGCCTGCTCTCTCTCCCCGGGCTCTGCAGCCTGTTGGCGGGGCTGGGGCTCCTCATGTTCTGGACGGGTTCCTGGAAGTTCCTGCATGTCGCTCTATGCACCATCAAAAGAGACTTAATGTGCCTGGTTGCTATCCTGAAGGTGAGGCTTTCCATTCGCCGACATCTGAGAAACAGAAGCACCATCCCTGCCCTGTTTGCCCAGACGGTGTCACTGCACCCGCACAAAGCTGCTTTGATCTACGAGGCTACAGGAGAGGTTTGGAGTTTCAaGGAGCTGCAGGATCGATGCCACGCTGTGGCTCACTGGGCGCTGGCCCAGGGGTGGGCCGAGGGAGATGTGGTGGCCCTGTACATGGAGAGCCATCCCATGGTGGTGGCTCTATGGTTGGGTCTGGCTATGATCGGCGTAGAGGCTGCGCACATAAACCACAACCTTCGACAGCATTCACTCGTGCACTGTGTCGGCGTGTCTGGTGCTCGGGCGATGGTCTTCGGGGCGGAGATGAGAGATGCGGTGTCAGAGGTGAGTGGCTCTCTGCAGCCCCACATGGTTTGGTTCAGCAGTGGTGAGCCGGACCGTGAAGAGGAGCTCTGCAGCCTCCAGgcccagaacctggacgcccagaacctggatgcccagaacctggacgcccagaacctggacgcccTGCTGGAGCGCTCGCCCAAACACCCACCGCGATACACCCTCAAGAAGGGCTTCAACGACAGACTCTTCTACATTTACACTTCTGGAACGACGGGCATGCCGAAGGCGGCCGTGGTGGTGCACAGTCGGTATTTTCGCATCGCTGCCTTTGGTTTCCACTCCTTTGGTTTGCGTCGTGATGACGTCATCTACAACTGTCTTCCCTTGTATCATTCAGCAGGTACCATCATGGGtGTCGGCCAGTGTTTGCTCTTCGGTGTGACCGTCGTGGTCAGAAGGAAGTTCTCGGCCAGTCGCTTCTGGGACGACTGCGTCAAACACAACTGCACTGTAATTCAATACATCGGCGAGATTTGCCGCTACCTGTTGGCCCAGCCGGTCCGTTCATCCGAGGCACGTCACCGGGTGCGTGTTGCCATTGGCAACGGCCTCCGTCCGTCTGCGTGGGAAGAGTTCGTCCAGAGATTCAGAATCCTGCGAATCGGGGAATTTTATGGCGCCACAGAGTGCAACTGCAGCaTGCTCAACATAGACGGAAAGGTGGGGGCGTGTGGCTTCAACAGCCGCATCCTGCCCAGCTTCTACCCCATCAGACTGGTCAGGGTGCAGGAGGGGAACAaAGAGCTGCTCAGGGATCCACAGGGCCTCTGTATACCCTGTATGCCTGGTGAGCCGGGCATGTTGGTAGGACGCATCAACCTCACGGATCCACTCAGGAGATTTGACGGCTACGCTGATAAGGACTCTACCAATGACAAAATAGCGCACAATGTCTTCAAGATGGGGGACTCTGCGTACGTCTCAGGTGACCTGCTGGTGATGGATGATTACGGCTACATTTATTTCAGGGACCGTAGCGGCGACACGTTTCGTTGGCGAGGGGAAAACGTTTCCACCACGGAGGTGGAGGGGGTCCTCAGCCGCCTGcTGGGACACACAGTCGTAGCCGTCTACGGAGCGTCCGTCCCAGgtgtggaggggaaggctggcaTGGCAGCAATAGCTCACGCGGGAGGCCGGTTTGACCTCGATGCGTTCTTGATCGCCGTACAGAAAGCTCTGCCTTCCTACGCACGCCCCGTCTTCCTGAGACTCATGCCATCTGTTGACACTACAGGTACCTTTAAAATCCAGAAGACTCGGCTGCAGAGGGAAGGATACAAGTCGCGAGACTCGAGGGAGGAGATTTATTTCCTGAACAGTCGCGCTGGCCGTTACGAGGCTGTTACTGATGAACTGTATGAAGCCATCGTGGAGGGGAGGGTGCGTCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845	Conserved_site	AMP-binding, conserved site	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43107	LONG-CHAIN FATTY ACID TRANSPORT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001579	Biological Process	medium-chain fatty acid transport	Interproscan
GO:0004467	Molecular Function	long-chain fatty acid-CoA ligase activity	Interproscan
GO:0005324	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006646	Biological Process	phosphatidylethanolamine biosynthetic process	Interproscan
GO:0006654	Biological Process	phosphatidic acid biosynthetic process	Interproscan
GO:0006656	Biological Process	phosphatidylcholine biosynthetic process	Interproscan
GO:0006659	Biological Process	phosphatidylserine biosynthetic process	Interproscan
GO:0006661	Biological Process	phosphatidylinositol biosynthetic process	Interproscan
GO:0009409	Biological Process	response to cold	Interproscan
GO:0015245	Molecular Function	fatty acid transmembrane transporter activity	Interproscan
GO:0031652	Biological Process	positive regulation of heat generation	Interproscan
GO:0032049	Biological Process	cardiolipin biosynthetic process	Interproscan
GO:0032868	Biological Process	response to insulin	Interproscan
GO:0033211	Biological Process	adiponectin-activated signaling pathway	Interproscan
GO:0044539	Biological Process	long-chain fatty acid import into cell	Interproscan
GO:0071072	Biological Process	negative regulation of phospholipid biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-