Gene detail

Detailed information of HS21794 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21794	KH DOMAIN CONTAINING RNA BINDING PROTEIN	chr24	22125477	22130570	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21794

ATGTCTGATTACGGCGGTCTTCCGACGAACGGAGTCGGTGCTGGGATGAAAAACGACGCTTTTGCGGATGCAGTACAACGAGCCAGACAGGTAATTAAGTGCTCTACGGCAGGAGGAGGCAGCTAACGCTGGCTAGCTGGTGGGGAAACCGGAGCTAGCTTAATCACCCGTGAcGTTAGCTGGTGGTAACTAGCAAAGCGGGCTAGGAGCTAGCGTTAGGAGCTAGGAGCCATTCATTTGTTTCACTCTCGCCAGGTGGTGTAACGTTAGTCAGATGAAATGTTTGCGGGCTGGACTGAGCAGCGGCAGCAGCTGAGGAGACTCGTgCGGGTACAACGTTAGCGAGCGAGAGGAAAGTGCTCGTCGGGATCATGTGAGTGAAGTTACACGGACCGACGGGAGCCGCTCGAGCTAAGTTAGCTCGGTTAGTTATTATCGTTAACGGGGAGCCGATCGGGAAGTTTGAGCCTCGTCCATGTGTAAAACGCCATTTTAGAAGAATTTGGCCATAACCCCGTCGGTATGACCCTATGCTTGTTGTGAAACGAGGTCAACTGGCCGGCTTGTTGTGTTGATAACGAGCGTTAAATAGACAAGGATGCgCGGTTCGTGGGTATTTATTGACCGTAATGTCGGCAGCGGTAGCTAcTCTGTGGCTCTTTCCTTCACGGTCAGGATGTGAAACCAACGTTTACCTCACGGGCCTTTGTACTGATCAACGTTAGTGAAAATAATCATTACATATCGATGTAACGCTAATTTATCGAATTTATTTTACTTCGCGAAACAAAGTCATTTGCTATTCGCAGTTAAAGTTGAACATGTTTTATTTTAGCACGCAAAAATGATCGATTATCAAAATTATATATTTTTAATATCAATTGAAATtAAGcCTTGTTGGTGTATTGCATCTCATTATAATCTCCTGTTTTAACTCTGGTAGAAAGATATTAAAGTAATAAAAATaataactttatttatatagcaccttttaaaaacaatgtttacaaagtgctctacagagtcaaggcaaaacaaatggaatagtaagaaacaaataaagcatttaaaaatatatattaaaataaaaaacagactaactaaattaggggaaccaaagttctgcataaaaggactagatcacttaaaagctgttctataaaaatgggttttaagaagtgatttaaaagaagtttctgattctgcgtgccttatcctctctggtaATCTTACTAGAACAATtttagtttagcacttttataaagttgagccacatgtgagattcattcaaaagagataaagggataccataattttagtctatagtatatttcaagcaccaaaaatgaaggatactacctttcccacaatgcatttcaatTCCATGTTAGACCCATTCTGCCTGTTAAATGAGTCTTTTAAATACCAAGCCCCCCTACAAAGGCTGAGTTTGTAGTCCCCAGGCCCAGGTGACCGCTTCAGTGTAATGGTCTTCCTGAGAAAATGGATGCgTCATCAAATGTATATTTATATTCACAATCTCAGGGTGTATTGTGGATACTTCATCCAGTGTATGTCTTTCTAGATTGCAGCTAAAATCGGTGGAGACGGTGTTTCCTCAGTGAGCAACAACGGTGGAGCTGAGAACTATCCATTCTCGGCACAGAAAAGATCCCTGGAAGAAGCAGGTAAAGAAATCGGCACAaACGGGCAGCTTGTCAGCATTTGTTAGTCTACATTGTAGAGTCACtTTTTTTTTTTTTTTTCAGATGAACCCGATGCCAAGAAGGTAGCGTCACAGAGTGAAATTGATTCTGCATTGTGTACGTTAAATCACTAATTGATCCTATTACAAACACTTGCTCGGTTCAGTTTCCAATTGCTCACCACTTTTTCTTTCTGACAGCTATTGGAGCTCAGCTGGCGGCCCTCTCTCAACAAAGGTATACAAATATGTTTTGTGTTTCTCATACAGCAACACTCTAGGTGCTTGTGATTAAGACTTGGATATATCCTTCATATATCAGTTTTTTTTAAACTTCCAGCAGTGTCAGACCCTCCACAATGACGGAAGAGTTCCGGGTGCCTGATGGtATGGTCGGCCTCAGTAAGTACATACTCATAATTTTCCTTAACCGTGGACATGGCTGTTTTACACATGTTTAAACAAAATCTAAATCAAACTATCTTTGCTGTTCCTAAAGTCATAGGTCGAGGAGGTGAACAAATTAACAAAATACAACAGGATTCTGGCTGCAAGGTCCAGATTGCGCACGGTAAtATATGTGCTGACATTGGACGTACGAGTCAACAAATGTTTTGTgTTCTTCTCTTGCATTGATACATATTTTCATTCAGACAGCGCTGGCCTTTCAGACAGAACCGTTTCTCTGACTGGGTCACCAGATGCCATACAGTAAGTGGATTTTCCCATGTAAGATGATGCATTTCCCAATTGACGATGCATCTCCTCGACTCGTAAAGACAACATTAGGCTTTTGTTCACTGTCTTTTGGATCAAATGGTGAAATAACCATCTTAAACATGACCAGATATTGATGTTTGGCCTAATCATATTGCACAATGTGTTCAAAAAGTTTAAGTATCTTAAGAAATTAAATTATAGAATATCTTAACCATTTAAATTTGGTCCCTTACAACAATTGTCAAACTTCAACCCCAACTATGGTCCTCACTCTAATCTTCATCATATCTACCCTAAATAAATATGATTAAGTCAACAGTAGTTTACAGCTTCAGCGACTCACATCAGGGCACAAAAGTGTTTTAAATATGCTGGACAAAAAAATTACCTTTAAGGAAATCTGAGAATCATGAACTACACTTTCAGCTTTTAGCAAAGTGCATTTGTTGCTCTTTGAAAGGAGAGGCTAATCATTCCCTACATTAcagggtttttcctgcatagagaaaatgtgggcacgcgcctaatccgttttcccgaaagcctatgacaaatcccaagcgcctaaggcaaaaaaagtctgcgatggaagaaaaaaaaaaactgttcatcacgtgcatgtcagcgaatatgttctcaatagtatgtttcaagtaggctacagccgaaccctcgttctgttttgattaatagtaatcgagttgattagcgtgtcttcttgtctgatcaatacgcaactgtgaggtgcgcgaatggacaaagcggccagctgctgatcactcaacagcccgatgtgcacgaacacacctggactattgtcaatagggatgcaccgatctgatcggcgccgatccatatcggccgatattcccattatcggttttgatcggtgttctcaaacggccgatcaaacttggccgatcagatgacgtaaaatctgcgagaacaactatcagagacgtttcaatcgcggcgcaacggagacgatgcgcccggcgagggccgcagagtgagaggtccacgaggggatcctcaccaccgagcgccccgtcccccgagttgaatctctgggtcgactcagccgactctcacatgtctgcccctatagactgatgctcacggtaaacgcattcgatcgggagcgcgcgagggttttgataaagttagcggaagtatttaagtgacaacatccggttttgcaaagttagcggaaagaaccacgtgaaacaacatccgtttttcaaaataagatgtcgacaaatcatacactagcatataaaagtaaacaatgaactgattttgtatctttagagatcgtttctgagatttagcttaaattatgctaacattaaaacatttttactgtaccaaggaagagttgataaaaataagtcagacttttgtatgttaaacaaagtcctgtaaatggatttccccaagagttccaggaaatgaataatgcagacgtgttccatacatatctgaaatcccctataatagcaatcaaacaattttaatgtatcaattaggacatttttcaaagtaaaagtcctaaatgtttaaagaaattggtaatttctttaatgtttgaggtgctttatatatgtatttcctcatattcctagtcaataatgctacacaattaatagaatgcttcagtcaacaccgtgatcggtattatcggatcggcagatactgatttcagtgatcggtgatcgtcaccaaaaaacctgatcggtgcatctctaattgtcaatctattagcctaatctattttagcaaaatgatttcctcaagcattgcctccattatttatggaagaaaaaaaaAtacctagacgtctgctaattacggtaacatggcaaTacagaccgtgcgcgcacagcgtgccaacattttttttttgcggagcactgaagactcattttgacccaggaaaaaccctgCATTAACATTTTATTTTTCCTCCAGGAGAGCCAAGGCCCTTATAGATGACATCGTGTCACGGGGTCATGAGACGCCTAATGGGCAGTCGGGTTCCATGCAGGAGATGATCATCCCTGCAGGCAAGGCTGGTCTTATTATTGGTAAAGGAGGAGAGACCATCAAACAGCTACAGGTgaGACTCAGTGTACCTTAGTATAATTATCAGTGCTTTTGTTGTACAAATATTAGAAATAAAATGATAATGGAgGGGGGGGGcGGTCTGTACCCATTGAGTGCACTGAAACAGTAAATGGTGTAACATACTCATGATGTTTATGGTATATTTCCCGTTTGTGATTAATGTAACATTCTTCTTCTGCAAAATCGTAGGAGCGGGCTGGAGTGAAAATGATTCTTATTCAAGATGGATCCCAGCCACCCAACATAGACAAACCCCTACGCATCATTGGAGACCCCTACAAAGTGCAGGTATGCCTCGAACACGGTGGAGATAGTTTTTTGGCTCGGCGGGAGATGAGTTATGCCCCCATTTACCTTTCTAATCATTTTGTCTTCTGTTGCTTTTTTAGCAAGCAAAGGATATGGTGAATGAGATCCTACGAGACAGGGACCATGCAGGGTTTGCAGAACGAAGTGACTACGGCCCAAGGATGggaggaggaggaggaggaggaagcggaggaggaggagggggtgggggaggtggcggcagcggcagcggtATGTCTGATTACGGCGGTCTTCCGACGAACGGAGTCGGTGCTGGGATGAAAAACGACGCTTTTGCGGATGCAGTACAACGAGCCAGACAGATTGCAGCTAAAATCGGTGGAGACGGTGTTTCCTCAGTGAGCAACAACGGTGGAGCTGAGAACTATCCATTCTCGGCACAGAAAAGATCCCTGGAAGAAGCAGATGAACCCGATGCCAAGAAGGTAGCGTCACAGAGTGAAATTGATTCTGCATTGTCTATTGGAGCTCAGCTGGCGGCCCTCTCTCAACAAAGCAGTGTCAGACCCTCCACAATGACGGAAGAGTTCCGGGTGCCTGATGGtATGGTCGGCCTCATCATAGGTCGAGGAGGTGAACAAATTAACAAAATACAACAGGATTCTGGCTGCAAGGTCCAGATTGCGCACGACAGCGCTGGCCTTTCAGACAGAACCGTTTCTCTGACTGGGTCACCAGATGCCATACAGAGAGCCAAGGCCCTTATAGATGACATCGTGTCACGGGGTCATGAGACGCCTAATGGGCAGTCGGGTTCCATGCAGGAGATGATCATCCCTGCAGGCAAGGCTGGTCTTATTATTGGTAAAGGAGGAGAGACCATCAAACAGCTACAGGAGCGGGCTGGAGTGAAAATGATTCTTATTCAAGATGGATCCCAGCCACCCAACATAGACAAACCCCTACGCATCATTGGAGACCCCTACAAAGTGCAGCAAGCAAAGGATATGGTGAATGAGATCCTACGAGACAGGGACCATGCAGGGTTTGCAGAACGAAGTGACTACGGCCCAAGGATGggaggaggaggaggaggaggaagcggaggaggaggagggggtgggggaggtggcggcagcggcagcggt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR047369	Domain	Far upstream element-binding protein 2, second type I K homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-