Detailed information of HS21651 in Pseudoliparis swirei Gene info
Gene IDAnnotationChromosomeStartEndStrand
HS21651TRINUCLEOTIDE REPEAT-CONTAINING GENE 6chr241887361818884820+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00627UBAUBA/TS-N domainDomainInterproscan
PF12938M_domainM domain of GW182DomainInterproscan
PF16608TNRC6-PABC_bdgTNRC6-PABC binding domainDisorderedInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR026805DomainGW182, middle domainInterproscan
IPR032226DomainTNRC6, PABC binding domainInterproscan
IPR034927DomainTNRC6C, RNA recognition motifInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR041917DomainTrinucleotide repeat-containing gene 6C protein, UBA domainInterproscan
IPR052068FamilyGW182 domain-containing proteinInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR13020TRINUCLEOTIDE REPEAT-CONTAINING GENE 6Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0035195Biological ProcessmiRNA-mediated post-transcriptional gene silencingInterproscan
GO:0060213Biological Processpositive regulation of nuclear-transcribed mRNA poly(A) tail shorteningInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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