Gene detail

Detailed information of HS21609 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21609	RIBONUCLEASE H2 SUBUNIT A	chr24	17741523	17745598	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21609

ATGGGACAGGGGAAGGTAAAGAACCGATCAAAAATAAAACGTCTGAACTTTGGCAGAAAAAGTGGGCTGAGGACAGTGAAGGCAGAATATACTCTAAAGTATAAAAGACAGTTGGAGCCTTCCTATACAGTTTATGGTTTATGGTTTACTGGTTATTTTTACACAGGTTTTTAAAGTGTATAGGGATACCATACTTCTTAATAAACATCAACGTGTTTAACTTTAATATAATATACATGCttttaatttgtaatttgtaatgtaatatatttgtatttattatttgttccctctgcatactctgatacgcaacatgcgggatgtaactcaaatgtggccttgcaatacgtccatagactgtaaaggcgaagaagaagaagaagaagaagaagaagaagaagaaACCCGTGACGTCATTCCAGGGGCGCCAAATCTGGATGAGACAGAAACACAACACGGAGCTGTCAACGTCTACTTCGGTAAGAATGAGCTTTGTTCACAAATATGAAGATTCACGCTCCGCTTATGGTTTTCTCGCGAGAGTCCAAACTGCTTGTTTAGAAAGAACATCCGGGTAACGTTAGCTAGCAAGGCGGCTAATGTTTGAGTTTGCGACGGCTCGAGAGCTCACGCTGCTGTGTTTTGCTGCTACTCGTTTGACGTCGGCAGGAGACGGAGTTATATCGAGTAAGACTTCAACAAGATGAGATGAAGTCGTCTTAAAGcagcggttcttaacctgggttcgatcgaacccatcgaacctcaggggttcggtgagtcactctcagggTGGAGACACACGATTTCAAACGGTATTTTGAATGAACCATAAAACAAAAACACAAAAGCTACTCGGACCCAGACGTAGAggtgaaagtcactgagctgcgtgagcctacgggggatgttatgtatgaatatatatgatatcaatgttatgaacccgaacacgagggcgttagatgttccggcgttttgtgggatttccacaagtataaagcagaactattggttgtaatggatccccgtacatgaagtggcatataacttactgctggtgaaattactcttttatttgatttctttgagtgacaatacattcataaacattggtaaactatcaccaccctaagagctttagcctcatacgggtccattaaactatattcaatttataacgatatccgtaacaatattcgtggccgtactgtcaagttcgcattcagacataaagcaaatgtgtgattccttttaacttgtcgaaataatagtcttatgtatctattagagaggaagtggattaaaacctctataacttattcatacacaacaatatcaaaaggcatacatcaaaaccaataaggaaaatacaaaacgggcaacacaaaacaataaaccttccatgtggttacttacagtggtttttatttcatggtggatgaaggaaataataactgtttccacggagtaaagccacggagataagccacgccccctctaaggtgtgaatgatgagaccacaaatagtcatgagagtaaagcgttgcaaaggtggtcaaaatttgtaacgcAAAATAAATTCAGCCCGCTTGTTTTTTTTTaACctgaacttgtatctgaaaggcaacagtaaatttgcagtaaatatttattgagttatgtttttgtgtgaaattaatgttttgttgattttgttctttgaacacagtgattttgtggagaactgatgcatggttcattttaactaataaaatatatacctatgttttgaagaaatcatattttatttttccgattacgaagtgttcgtctaatggaatgatgaagcttgcagggttcagtccctccaataaggttaagaacctctctctctctctctctctctctctcAGCCGGCTGTTATGGACCTCAGCCCCTTTGACAAGGACAACTCGGTCAGCTGCAGACTGTCTTCTCAGATCCCGGATGTCTGCCGGACTGAGGACTGCTGTTTGGGCATCGACGAGGCCGGCAGGGGGCCCGTGCTGGGTACGCcGTCGGCTAATTGTCCCGCAACTTTATCCCGACACTAGCACCCCTCGCATCCTCTGTTGCAGTCACCCATTGTTCATCATGGAGATATGGATTGTATTCACTCGTCTGCCACGGTTCTGAAGGCCTTGTGCCATGTGGTATTCAACGCGTTAACgGTGTTCTGGTTCGCAGGGCCCATGGTGTATGGAATATGTTTCTGTCCGGTTTCCAAAAAGCAGGAGCTGAAGGACTCCAAAGTGGCAGGTAACCCTGActtcttcttgttcttgttcttcttTATTCACATTTGTGATGCATCCCCGGCGCTCCCTCCACAGATTCAAAGACACTGACCGAGGCAGAAAGAGAGAATCTTTTCCAAGCACTGGATGAAGCCCGGAGTTACATCGGCTGGGCTGTGCAGATTCTCTCCCCCAACACCATCTCCACCAGCATGTTGCAGAGGTGTGTGTTACACTTGATGGATACCGCAAACACAGCTGCTTATTTCTTCATGAGCTGTGTTTTATATTCACACCCTGACGAGATGTCTGCTTGTGTTAGGACaAAATACAACCTGAACGCCATTTCGCATGACACCGCGATTGGTCTGGTGCAGTATGCCTTGGACAGTGGAGTACAGCTCACAGAGGTATGCGATTCATGTCAATATAAAGCTGGACACCTCATGCTTTTTTTGTTGTTGTGTACAGTTGGAAACATTCAAgATTAGACACCGCCATATATTCTCATTTaCGCTCACGCGTCCCATGGTTTGCCCCCTCCTGTCCAACGTGGCCGTTCCTCGTCCACCTCCCTGCTtCTATGCAGGTCTTTGTGGACACAGTCGGCCCGGCAGAGAAGTACGAGGAGAAACTCTCgAAGCTCTTCCCGGGTATCGAGGTGACGGTGAGGCCAAAGGCCGACTCCCTCTTCCCCGTCGTCAGTGCCGCCAGTATTTGTGCGAAGGTCAGTGACCGACAGCCGACCGGATCTCCCTGTTACCTCAGCAGTCGTAGTTTCAGGTTaTAGAGCCAACGGCTGCTGCAGAAGAGCTCCGTGTCCACTTTTTCAGCGTAGTTCAAAATCAGTCAATAGCTTTCTGTTTCTCAGGTGGCCCGGGATCGCATTGTGAAGGGCTGGAACTTCGCCGAGGACCTGGAAGATGTGGATGCAGACTACGGCTCCGGATACCCCAATGGTGACAGAAACATACTGACATCTGGGCTTTAGAAATACTTCAGAATCCACCCTTAAATCTGAATTCAACCCATTAATAGTTTTATTTAAAATTCCATGTCACTGCTAATGCTACCTCAACAACTCACAGACATCAATGCCTGTAGATGAACAATTTTTTTTCTTTTCTTCTCCTCTGTGTTTTCAGACCCTAAGACTAAAGCGTGGATGCTGAAGTACCTGGACCCAGTGTTCGGTTACCCTCAGTTTGTTCGATTTAGCTGGAGCACTGCCCAAACCCTGATGGACAGCAAGGGTGTGACAGTCCACTGGTAAAAAAAAtTTACTTTTGACCAAAGTCCTTAGATGTATAAAAAGCAGAGGTTTATTTTGGAAGTTAAAGAACACCATTGAAACTGCATTAAAACATGATCTTTGTTATCCGTGACTCTCTGCTATTCAGTGACAGTGATACAAAtAATTTTATTAAAGGATTAAAATTGTTTCCAGCTGTTAACCAAGTCCATAGAGGCCAAAAACAACTTCATAAAaatAAAAAAtAAGCTTTTGAAATTTGCTTTTtTGTGTGCATGGGAACCACGTCTCCTTTGATTTCCAGCTCATGCTTTAATGTCTGTGCAAATCCTTTTGACTTATTGAGACAAGAGCTAACCACAGTGTAAAAAATCAGTTAACGTTTTTGTATTAAATCTGTCCTCAGGGACGACGATGACGAGGACGGGGAGAAGGCGGCCCAGCGGCAGAACAACAAGTCCATGTTGGCGTACTTCAGTGCATCAGCTGGAGGTAACGACCAAAACCCGACCCGCCAGACACACCGCTTCTTCAGCGAGCGCAGGCTGAAGAGCCTCGACACACTCATGGGACAGGGGAAGactgtaaaggcgaagaagaagaagaagaagaagaagaagaagaagaaACCCGTGACGTCATTCCAGGGGCGCCAAATCTGGATGAGACAGAAACACAACACGGAGCTGTCAACGTCTACTTCGCCGGCTGTTATGGACCTCAGCCCCTTTGACAAGGACAACTCGGTCAGCTGCAGACTGTCTTCTCAGATCCCGGATGTCTGCCGGACTGAGGACTGCTGTTTGGGCATCGACGAGGCCGGCAGGGGGCCCGTGCTGGGGCCCATGGTGTATGGAATATGTTTCTGTCCGGTTTCCAAAAAGCAGGAGCTGAAGGACTCCAAAGTGGCAGATTCAAAGACACTGACCGAGGCAGAAAGAGAGAATCTTTTCCAAGCACTGGATGAAGCCCGGAGTTACATCGGCTGGGCTGTGCAGATTCTCTCCCCCAACACCATCTCCACCAGCATGTTGCAGAGGACaAAATACAACCTGAACGCCATTTCGCATGACACCGCGATTGGTCTGGTGCAGTATGCCTTGGACAGTGGAGTACAGCTCACAGAGGTCTTTGTGGACACAGTCGGCCCGGCAGAGAAGTACGAGGAGAAACTCTCgAAGCTCTTCCCGGGTATCGAGGTGACGGTGAGGCCAAAGGCCGACTCCCTCTTCCCCGTCGTCAGTGCCGCCAGTATTTGTGCGAAGGTGGCCCGGGATCGCATTGTGAAGGGCTGGAACTTCGCCGAGGACCTGGAAGATGTGGATGCAGACTACGGCTCCGGATACCCCAATGACCCTAAGACTAAAGCGTGGATGCTGAAGTACCTGGACCCAGTGTTCGGTTACCCTCAGTTTGTTCGATTTAGCTGGAGCACTGCCCAAACCCTGATGGACAGCAAGGGTGTGACAGTCCACTGGGACGACGATGACGAGGACGGGGAGAAGGCGGCCCAGCGGCAGAACAACAAGTCCATGTTGGCGTACTTCAGTGCATCAGCTGGAGGTAACGACCAAAACCCGACCCGCCAGACACACCGCTTCTTCAGCGAGCGCAGGCTGAAGAGCCTCGACACACTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01351	RNase_HII	Ribonuclease HII	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001352	Family	Ribonuclease HII/HIII	Interproscan
IPR004649	Family	Ribonuclease H2, subunit A	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023160	Homologous_superfamily	Ribonuclease HII, helix-loop-helix cap domain superfamily	Interproscan
IPR024567	Domain	Ribonuclease HII/HIII domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10954	RIBONUCLEASE H2 SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0016070	Biological Process	RNA metabolic process	Interproscan
GO:0032299	Cellular Component	ribonuclease H2 complex	Interproscan
GO:0043137	Biological Process	DNA replication, removal of RNA primer	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-