Gene detail

Detailed information of HS21593 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21593	YALI0A06105P	chr24	17493395	17495473	+

Gene Structure

More details in Jbrowse Sequence

CDS

HS21593

Transcript

HS21593

atggatccggctaaagtgcgcgctgtggccgaatggcccacacctgatagccgcaaaaaggtccagcagttcctcggttttgcgaacttttataggcggtttatcagaggcttcagcgcaatagcagctccgctccatgcactcacctccacgaaggtgcgcttcctctggtccccggaggcggaggcagcctttcagcacctcaagacccgcttcaccacggctcccatcctcacgatgcctgatccccagcggcagtttgtggtcgaggtggacgcctccaacgaggggattggagcggtcctgtcccagcggtctgaacaggacggtaagatgcatccctgcgccttcttgtcgcagcgtctgtcgcgggcggagcggaactatgatgtcggcaaccgggagctgttggcggtcaagctggccttggaagaatggaggcactggcttgagggagctgaacacccgtttatcgtctggaccgaccataggaacctggaatatatacgtaaagccaagagactgaattcttgccaggcaaggtgggggctcttttttaaccacttctctttcgccctctcgtacaggccggggtcccagaatgtcaagcccgatgccttgtcacgtctctacgaccccgagcctgttgccaaggaaccagagccaatccttccacaaacctgtgtggttggagcggtgacttggcaaatagagaagcaggtcaagcaggcaaacggggagagtccgccacctagtgggtgccctgagaatcggttgtttgttccggctgagctgcgcccacaggtgatccactgggctcacacctcactgctttcctgtcatccgggggttcggcggaccatgtttgccatctctcggaggttctggtggcggtccatggaacgggaggtccaggagtacgttggggcttgttcggtctgcgccaggaataagacgtcctctgggccgcgtatgggacttctacaaccgctccccatcccctccagaccatgggctaacatctccatggactttgtcacgggcctcccggtctccgaaggtaacaccacggttcttaccgtggtggacaggttttccaaaatgacgagattcatagccttgcccaaactgccgtcagccaaagagacagctgagattatgattaaccatgtcttcagagtccacggtttccctagggacatcgtttccgaccgggggccccagttcgtgtcatgcttctggaaggagttttgtcggcttatcggagccacggcgagtctcacgtcaggctatcacccggaggccaacggccaggccgaacgcctcaaccagcagctggagaccggtctccgctgtctggtgtcccagaacccctcaacctggagccggcacctggtctgggtcgagtatgcccataataccctgcccacctcggccacaggtttctcacccttcaaatgtgtgtatggttacgagcctcctgtcttcgcggaccaggaaccggaagtgtctgtgccctccgcccacgccatggtccgccgttgccgacgtatctgggcggccgcccggcagctcctcatccgccaaggagaccgggtcaaaagggccgccgaccggagaagacgacccgcccctgcgtaccagccgggccagagagtgtggctctcagccaagaacctctccctcaaaggcctctcgaagaaactggcaccgcgcttcgtggggccattccccatcaccaagattatcgggcctgcagcggttcgccttcgtctgccccgggctctccgtgtccacccgacattccatgtcagtcaggtcaagccagtcagggagagctccatggtcccgcccctcccgccccctcctcctcctgaagtaatagacgggggtcctgtctacaaggtcaagaagttattagctgtgcgcaaccgtggtcggggcaagcagtacctggtggactggcaggggtacggcccggaggagcgtcaatgggtcccatcccggtttatactggatcggtccctcatagaagactttgtgaaggaccatcctgaactgcctgggccgtcagaagtcatggatccggctaaagtgcgcgctgtggccgaatggcccacacctgatagccgcaaaaaggtccagcagttcctcggttttgcgaacttttataggcggtttatcagaggcttcagcgcaatagcagctccgctccatgcactcacctccacgaaggtgcgcttcctctggtccccggaggcggaggcagcctttcagcacctcaagacccgcttcaccacggctcccatcctcacgatgcctgatccccagcggcagtttgtggtcgaggtggacgcctccaacgaggggattggagcggtcctgtcccagcggtctgaacaggacggtaagatgcatccctgcgccttcttgtcgcagcgtctgtcgcgggcggagcggaactatgatgtcggcaaccgggagctgttggcggtcaagctggccttggaagaatggaggcactggcttgagggagctgaacacccgtttatcgtctggaccgaccataggaacctggaatatatacgtaaagccaagagactgaattcttgccaggcaaggtgggggctcttttttaaccacttctctttcgccctctcgtacaggccggggtcccagaatgtcaagcccgatgccttgtcacgtctctacgaccccgagcctgttgccaaggaaccagagccaatccttccacaaacctgtgtggttggagcggtgacttggcaaatagagaagcaggtcaagcaggcaaacggggagagtccgccacctagtgggtgccctgagaatcggttgtttgttccggctgagctgcgcccacaggtgatccactgggctcacacctcactgctttcctgtcatccgggggttcggcggaccatgtttgccatctctcggaggttctggtggcggtccatggaacgggaggtccaggagtacgttggggcttgttcggtctgcgccaggaataagacgtcctctgggccgcgtatgggacttctacaaccgctccccatcccctccagaccatgggctaacatctccatggactttgtcacgggcctcccggtctccgaaggtaacaccacggttcttaccgtggtggacaggttttccaaaatgacgagattcatagccttgcccaaactgccgtcagccaaagagacagctgagattatgattaaccatgtcttcagagtccacggtttccctagggacatcgtttccgaccgggggccccagttcgtgtcatgcttctggaaggagttttgtcggcttatcggagccacggcgagtctcacgtcaggctatcacccggaggccaacggccaggccgaacgcctcaaccagcagctggagaccggtctccgctgtctggtgtcccagaacccctcaacctggagccggcacctggtctgggtcgagtatgcccataataccctgcccacctcggccacaggtttctcacccttcaaatgtgtgtatggttacgagcctcctgtcttcgcggaccaggaaccggaagtgtctgtgccctccgcccacgccatggtccgccgttgccgacgtatctgggcggccgcccggcagctcctcatccgccaaggagaccgggtcaaaagggccgccgaccggagaagacgacccgcccctgcgtaccagccgggccagagagtgtggctctcagccaagaacctctccctcaaaggcctctcgaagaaactggcaccgcgcttcgtggggccattccccatcaccaagattatcgggcctgcagcggttcgccttcgtctgccccgggctctccgtgtccacccgacattccatgtcagtcaggtcaagccagtcagggagagctccatggtcccgcccctcccgccccctcctcctcctgaagtaatagacgggggtcctgtctacaaggtcaagaagttattagctgtgcgcaaccgtggtcggggcaagcagtacctggtggactggcaggggtacggcccggaggagcgtcaatgggtcccatcccggtttatactggatcggtccctcatagaagactttgtgaaggaccatcctgaactgcctgggccgtcagaagtc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45835	YALI0A06105P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-