Gene detail

Detailed information of HS21543 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21543	2-HYDROXYACID DEHYDROGENASE-RELATED	chr24	16176097	16178801	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21543

GTGGCAATGTGGTGCAGTCGTATGGCACTGCGTCGGCTTCAGGGGGTCGTtgctgctgccgctgctgctCCACCACCGACTGGGGGCCTGACAAGCATCGCACGCCGGGAGATGTCCACCCTGAAACGGGTGTATGTCACCCGACGGATCCCACCCGAGGGCATGAGGATCCTCCGGGAATCTGGACAGTGAGTGACCCCTTCGGTCCCTTTCGTAAATCTTGGTGTGGCTTGCGTCTTGCGTAAAGCTGACCGCGATACCCCTTTTTAGAAATGCCTGCTTTGTGGAGTTCATCATTTACTTGTGTAAACATGGCTGCTGATGTTTGCCTTTGGGTTGGTCAGATAAGACTGGGAGCTGAAAGGGTTTTCCCACCACAGAGGAGCTGAAGAAACCTCTATAACCTTCACGGTCCCAGTAGTTCCGTGAAAAAcCGACAGCTTTGAGATGCATCTTAGTAtAAACACCAACGAAAAGCTTGAGCGCcCAATGCCATGTcTTCTGgGGACGATTaGAAACTGGATTTGACCTGGATCTCATTTCTGTTTCTCCTCCAGGGTGCAGCTGGACCTGTGGGACTCCGACGACGCCCCCGTGCCCAGGGAGGAACTCCTGCGGCAGGTCAGAGGCGTGGATGGTCTGGTCTGCGTGCTGACGGAGAAGATCGATACAGAGCTGCTCGACGCTGCAGGTTGGGGGAGGGGGACACgAGTCAGTTGAGCGACAAACACAATaAAATGCATTCATTGTTTTGGGGGTGTTCTCCCGCAGGTCCAAAtCTGAAGGTGCTCAGCACCATGTCGGTGGGATTCGACCATCTGTCTTTGGAGGAGCTGAAGAAAAGGTGACTCTCCTCTTTCTATCTCCTTGAGACACATCAAAGTCAAAGGTGGTGATGTATTTAAtgtgtctgtgtgtgtgtgtgtgtgtgcCCCCCCCCCCCTCCCCCAGAGGAATCCGTGTGGGCTACACCCCGGATGTCCTGACCGACTCTGTGGCGGAGCTGACTGTGGCTCTGCTGCTCGCCACGTCCAGGAGGCTCATAGAGGCCACGCATGAAGCCAAGACGTGAGTTACTACACACGCTCAGATCTATCCATGTGTACAGAGACTTGTTTgGGGGGGGGGGAGGTCAAAGGTTAAACTCTCTCTCTGCTTCCCGTCTCAGTGGCGGCTGGGGCACATGGAGAACCTTGTGGCTGTGTGGACACGAGCTGGCCAACAGCACCGTGGGGATCCTGGGCCTGGGGAGGATCGGTAAGCACATGCACGCGCTCGTCAATCAATCTGGCATGCCCGTAAACAAAATAACACCAACAgAAATGCCTGATACTTCTCACTTTGTGCTTGAAGGTGTGGCCATCGCCGAGCGCCTGGCCCCTTTCAAGGTCAAGAAGTTTATCTACGCGGACGTGGCTCCCAGGCCCGAGCTTGCCAGCATCATAGGTGCAGAGTACGGTGAGGATTGTTGAGACGTACTTGCTGCCTTCACACCCCGGTGCCACAGGTGTTTTAGAGCAAATCAAATGACATGTCAGGTTTTTGATGTTGTTGATGCGATGGGCGCCGTCTCCCCGGGGGCCCAGTTTCTTTCGACGAGCTGGCGGAGCGGTCGGATTTCCTGGCCATTTGCTGCGCTTTGACGGCGGAGACCAAGGAGATCTGCAACAAACACCTCTTCTCCAAGATGAAGAACACCTCCATCTTCATCAACACAAGCAGGTGCACGGAAGCACGCAGCCGAATCCCTTCTGACCCATTGACGTGTCATGAGATACTCAACCGTACGGCGGCAGTCAAGTCTCTCTAATTCCGGTATTTCTGCTGCGTTAAGGGGCGGCGTGGTGAACCAGGAGGACCTGTATGAGGCTCTGTCCACAGGCCAGATTGCGGGAGCTGGGTTGGATGTGACGGTCCCTGAGCCCCTGCCCACAGACCACCCGCTGTTCACCCTCAAAAATTGCGGTGAGTAAGACAGACTTATCGGTGCTTCAGAcCCCCCCCCCAAAAAACCAGGCTGtttctctattacctgtcgtgccatttatcaatctgcagttttggtgggagtgGCCTAACAGGACTGTAGTATTCTCTTTAGTCGTAGGGATTTCTTTTTTTAGTACTTTGAGCACCGTAAGCCACGATTGTAATAGAGACATTTTATTGgacagaaggccggtagagcagggtcggcctccaaatcagagggtcggtggttcaatccccggctcagctagtccatgccgatgtgtccttgggcaagacactgaacccaaagtgtctcccgtagccgtgtatgcatgttagctagtcctgatgggcaggcggcaccttgcatggtggctcctcccatcagtgtgtgaatgatgacatgcagtgttgaagcgttttgagtggtcagaaggctggaaaagcgccatacaggttcagtccacttaccatttccaaaacttggcaaagagaccaaaaaagtctagattgataaatagcgccacaggtaagaggaactctgtcgctttgattCGACCTTCTCACACTGGGCCTCATCATGTCTCTCTATAcccccccccccccccccaccAGTGATTCTCCCGCACATTGCCAGTGCCTCTCACACCACCCGCAACGCCATGTCTGCCATGGCGGCGAACAACCTCCTGCTGGGCCTGCGGGGCGAGCCGATGATCAAAGAGCTCCACCCGGTGGCAATGTGGTGCAGTCGTATGGCACTGCGTCGGCTTCAGGGGGTCGTtgctgctgccgctgctgctCCACCACCGACTGGGGGCCTGACAAGCATCGCACGCCGGGAGATGTCCACCCTGAAACGGGTGTATGTCACCCGACGGATCCCACCCGAGGGCATGAGGATCCTCCGGGAATCTGGACAGGTGCAGCTGGACCTGTGGGACTCCGACGACGCCCCCGTGCCCAGGGAGGAACTCCTGCGGCAGGTCAGAGGCGTGGATGGTCTGGTCTGCGTGCTGACGGAGAAGATCGATACAGAGCTGCTCGACGCTGCAGGTCCAAAtCTGAAGGTGCTCAGCACCATGTCGGTGGGATTCGACCATCTGTCTTTGGAGGAGCTGAAGAAAAGAGGAATCCGTGTGGGCTACACCCCGGATGTCCTGACCGACTCTGTGGCGGAGCTGACTGTGGCTCTGCTGCTCGCCACGTCCAGGAGGCTCATAGAGGCCACGCATGAAGCCAAGACTGGCGGCTGGGGCACATGGAGAACCTTGTGGCTGTGTGGACACGAGCTGGCCAACAGCACCGTGGGGATCCTGGGCCTGGGGAGGATCGGTGTGGCCATCGCCGAGCGCCTGGCCCCTTTCAAGGTCAAGAAGTTTATCTACGCGGACGTGGCTCCCAGGCCCGAGCTTGCCAGCATCATAGGTGCAGAGTACGTTTCTTTCGACGAGCTGGCGGAGCGGTCGGATTTCCTGGCCATTTGCTGCGCTTTGACGGCGGAGACCAAGGAGATCTGCAACAAACACCTCTTCTCCAAGATGAAGAACACCTCCATCTTCATCAACACAAGCAGGGGCGGCGTGGTGAACCAGGAGGACCTGTATGAGGCTCTGTCCACAGGCCAGATTGCGGGAGCTGGGTTGGATGTGACGGTCCCTGAGCCCCTGCCCACAGACCACCCGCTGTTCACCCTCAAAAATTGCGTGATTCTCCCGCACATTGCCAGTGCCTCTCACACCACCCGCAACGCCATGTCTGCCATGGCGGCGAACAACCTCCTGCTGGGCCTGCGGGGCGAGCCGATGATCAAAGAGCTCCACCCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00389	2-Hacid_dh	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Domain	Interproscan
PF02826	2-Hacid_dh_C	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006139	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Interproscan
IPR006140	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain	Interproscan
IPR029753	Conserved_site	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050223	Family	D-isomer specific 2-hydroxyacid dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10996	2-HYDROXYACID DEHYDROGENASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008465	Molecular Function	hydroxypyruvate reductase (NADH) activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0016618	Molecular Function	hydroxypyruvate reductase [NAD(P)H] activity	Interproscan
GO:0030267	Molecular Function	glyoxylate reductase (NADPH) activity	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-