Gene detail

Detailed information of HS21406 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21406	APRATAXIN-RELATED	chr24	11377715	11380969	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21406

ATGCCGATTTGCCGGCTCATCAGTGATGAGAATAGTCATAAACCAATTCGGCTGCCACACCAACAGACAGTTGTCCTGGGTCGAGGTCCAGAGACGACTATTAAAGACAGAAAATGCTCTCGGCAGCAAGGTAATATAACGACACATTGCTGTTTGATACAATGGCTGCTTTAGTATTTAACGCTAGCTCTCAACCTCAAAGAAGGAAAAACAATTGACTATTTAAAGCATTACGAAACAAAAACTTTAATCCTTAAAAGGtATCTCATGGTTATTATCATACAAACTGAGTATATGAAAACAAATACATGATGTATGCATTTTTTTTAGGGAGTTAACATAGATTGCAATTTGCAACTATACATTCCTGTTTCCTCAAATGGATTCATACCATAGCTGACTGTAGGAGATACAATTTGAATTTATTTAAATTAGCATTCCCCCATATCGCTAATTTGATTGTGTAGACTGTTGTTTAAATAATTGTTATGGACTATATACTCTATATCTTATATTTTTAAATCTCAATATTTTTTTAAAGCAAACTTTAATTGATACAAATGTTGTCCCTTCTGAACCAGTTGAATTTAAAGCAGAGTGCAACAAAGGTTATGTTAAAGTTAAACAGGTAAGGAACTTTGCTTTTATAAAAGGGAAACTCATAAGACATTAGAAATAACTTGTTATGCTGAGTTTTGTTAACTTAGAATCAACCACAATTTCTTTATAATTCTGTGTCTCATTTCCTGTCTTCGTTCCAAAGCTGGGCGTGAACCCCACCTCCATAGATTCTGTGGTGGTGGGTAAGGACAATGAGGTAAAAATGAAAGCTGGACAGCAGCTTCATATAGTCAACCAGCTCTACCCATACACTGTACAGTTCAAGGAGGATCCCACCGGGCACTATGGCGGCACCAAAAGACCACGACAACTGTCTTCAGAGGACAGAGAGAGCCTCAGAGAGGATCAGAGTGTGAAAGCAGCCAAAAAGACAGAAACGGTCTCCGTTTCAGTCAGTGTTGGAGAAGCCACAAAAAGCACTGTAAGAGAAGGAAGGAAGAAAGTGCGCGCAAATATTGTTTTTAAGATGTTCACATGTTCACATGTTCTTGGATCATATTTATTTATATATCTATAAAGCCAGAATGTTATATTTGTTATATTACCTTCAATTTGTTGTAGGAAAGTTTTGGACATTGGAGCCAAGGTCTGAAGACATCAATGAATGACCCAAAGATGCAGGTAGCTGTTTACAGTAGTGTGACACTTACTCTAGTCGAGCTGGATTTGTTACTGCTTGACTTCATGTTTAAATTTGACCGATCATGTTTTCACAAAAACAGCATTTACGTTTCTCCAGGTATACAAGGATGACAAGGTAGTGGTTATCAAAGATAAATACCCCAAAGCTCGCTATCACTGGTTGGTCCTCCCGTGGCAGATCATTTCCAGTCTGAAGGCCTTAAGTGAGGTGCACTGCGATCTGGTGAAACACATGCAGCAAGTTGCTGACCAGATTGTTCGGCAGTGCCCAGATGCTGGCTTGCTACGTTTCCGTACTGGATACCATGCCATCCCCAGTATGAGGTAAGTAATCACTGTTTGAATGGTGCTTTTACAGTGAAAGACTAtgttgatgtttcaaattttcaattcaattcaattcagtttatttgtatagcccaatttcacaaattacaaatttgtctcggagtgctttacaatctgtacacatagacatccctgccccaaaacctcacatcggaccaggaaaaactcccaaataacccttcagggggaaaaaaagggaagaaacctgcaggacagcaacagaggaggatccctctccaggatggacagatgcaatagatgtaatgtgtacagaaggacagatttagagttaaaatacattcaatgaatatgacagagtgtatgaatagttcatagtaggcgtattccacgatggagacctccacgatccatcaggcagatggcggtggggaggaggagtgggcggagtctcaacaggacagtggcgtagtcaggagcaggaattccacgacccagacctcgatgatccatcaggcagataggatctatgccgtctcatagggtccgatgaccccatgagacgtgaagtcaaaaggactccggggagaaagcagagttagtaacgtgtgattgagagatgaaaattcatccttaaggagagaaaaaagaggagataggtactcagtgcatcctaaaacgtcccccggcagctataagcctatagcagcatatcaaggggctggaccagggcaaacctgattcagccctaactataagctctgtcaaagaggaaagtcttTTAATACACATATTTAACGCTAAGGACAGTTATTTTTTCTAAAGCACACTATAGATTTTTTATTGGAGTAACATATTTCCCCTCCTCATAGACAACGACTGATTTCAGTTAAAGCTGGTACAGTACGGATTTTATGTTTATAACACAAAATCAAAGGTCTACTTTTTGTTCATCGCTGCTGTTTATTGTTTATGAAATGTGCTATGCCAATGCAATTGCCTCATGCTTAGTGACATAGTAGCTTATAGCCAAAGCAAATCACATACTGAAGCATTAAAGGCAATTTGAAAAGACATTACTTATTTCTATTCAGAGCTCAACATCTTTTTGTGTCGTGTGTTAAAACTGGCTCTTTACACTTTACTGCCACTTAGTGGTAAGAGCTATACGTTTCATGAAAAAAAGCTAAATAGATATAGCAGTCTAAAACGCTTTGAAAGGTATTATAAAACGTATTCAAATTGTCATTGTCTTTTTTAAATGCAATGGAGATGAGGATTAGTGCGTAATTGATGTAGACACGTGAAAATATATCTCTAAATTCTTTTTTCCAGTCATGTACACCTCCATGTAATCAGCCAAGACTTTGACTCTCCTTGTTTAAAGAACAAAAAACACTGGAACTCATTTACAACTGACTATTTCATGGAGTCTCATGGTGAGAGCAAATAAAATAAAAACGTACTATTCTGATGTTGGTGTTTACTGAGTTGCTAATACATGTTTTTTATTTCCCTTTTTTGTTATCTACAGATGTCATTCAGATGCTTGAAACGAATGGAAGAGTTGATGTGAAAGAAGGAACCAGCGAGTTGTTAAAACTAGCTCTCCGCTGTCACATGTGTCTCAAAGATATTCCTACTATACCAGCTCTGAAGGAGCACCTAAAGTCTCACTTTCCCAGCATGCCGATTTGCCGGCTCATCAGTGATGAGAATAGTCATAAACCAATTCGGCTGCCACACCAACAGACAGTTGTCCTGGGTCGAGGTCCAGAGACGACTATTAAAGACAGAAAATGCTCTCGGCAGCAAGTTGAATTTAAAGCAGAGTGCAACAAAGGTTATGTTAAAGTTAAACAGCTGGGCGTGAACCCCACCTCCATAGATTCTGTGGTGGTGGGTAAGGACAATGAGGTAAAAATGAAAGCTGGACAGCAGCTTCATATAGTCAACCAGCTCTACCCATACACTGTACAGTTCAAGGAGGATCCCACCGGGCACTATGGCGGCACCAAAAGACCACGACAACTGTCTTCAGAGGACAGAGAGAGCCTCAGAGAGGATCAGAGTGTGAAAGCAGCCAAAAAGACAGAAACGGTCTCCGTTTCAGTCAGTGTTGGAGAAGCCACAAAAAGCACTGAAAGTTTTGGACATTGGAGCCAAGGTCTGAAGACATCAATGAATGACCCAAAGATGCAGGTATACAAGGATGACAAGGTAGTGGTTATCAAAGATAAATACCCCAAAGCTCGCTATCACTGGTTGGTCCTCCCGTGGCAGATCATTTCCAGTCTGAAGGCCTTAAGTGAGGTGCACTGCGATCTGGTGAAACACATGCAGCAAGTTGCTGACCAGATTGTTCGGCAGTGCCCAGATGCTGGCTTGCTACGTTTCCGTACTGGATACCATGCCATCCCCAGTATGAGTCATGTACACCTCCATGTAATCAGCCAAGACTTTGACTCTCCTTGTTTAAAGAACAAAAAACACTGGAACTCATTTACAACTGACTATTTCATGGAGTCTCATGATGTCATTCAGATGCTTGAAACGAATGGAAGAGTTGATGTGAAAGAAGGAACCAGCGAGTTGTTAAAACTAGCTCTCCGCTGTCACATGTGTCTCAAAGATATTCCTACTATACCAGCTCTGAAGGAGCACCTAAAGTCTCACTTTCCCAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11969	DcpS_C	Scavenger mRNA decapping enzyme C-term binding	Family	Interproscan
PF16278	zf-C2HE	C2HE / C2H2 / C2HC zinc-binding finger	Domain	Interproscan
PF17913	FHA_2	FHA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR011146	Domain	HIT-like domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR019808	Conserved_site	Histidine triad, conserved site	Interproscan
IPR032566	Domain	Aprataxin, C2HE/C2H2/C2HC zinc finger	Interproscan
IPR036265	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR041388	Domain	PNK, FHA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12486	APRATAXIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000012	Biological Process	single strand break repair	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0033699	Molecular Function	DNA 5'-adenosine monophosphate hydrolase activity	Interproscan
GO:1990165	Molecular Function	single-strand break-containing DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-