Gene detail

Detailed information of HS21371 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21371	LIPOXYGENASE	chr24	10933904	10938634	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21371

TTCTTTGGTTACCAGTTTCTAAACGGTGTGAACCCCATGTTGATCCAACGCTGCTCAACCCTGCCCAAAACCTTTcCTGTCAGTGATGACATGGTCTCCCTCAGTGGTCAGTGTAGCTTGGCAGATGAAATGAAGGTGAATGTCTTCACTTTGATTAATCTGAGAATCATATTTTGCTGCATGACATGTTAAAATGTAAAATGCATGGTGATTTTACATGTTTACTTAATATAGTTAATATTCATTTAATTCATGCAATTAAACACAGAGAGGCAACATATTCCTGTGTGACTACAAGCGTTTGGATGGTCTGAAATCAAACATCATCAACGAGAAGAAGCAGTACTTGATGGCTCCCCTGGTCCTTCTTCACCAAACACCTGATGACAAACTGATGCCAATTGCTATTCAGGTGAGATTAAAACTCATATAGCATACATCTCTGACCGTTTTAATTTCTAGGTGTTCCTTTTGAACTGTATGGCTCACTTCTGATTGTTAAATAAATTCCCACCTTTTTCCAAATAAATGAGAAAAAAACATGACATGACATGTAAAAAAAATTAACTGATCTGAGCTGTAAATAGGCATAACATATTATGCCTCTCTCCGCTGTAATGACCAGAATACATGTTCTACTTACCTTCACCTTTCACGGCCTGCAATCATGAATGCAAATGGCTTGTGTTCAGGATTCCAAACCAAACACTTTTACTGTTACAGGGTTGTCTCCCAAATCCCTTTTTAATTAAAAAATCAATACATTTTGTTTCACTGCATCTGAGTAAGTGTAAGCTGGCTCACAGAGGCACCTCTTATTTGTCGTTACTTGGTGATGTGTTGTGAATGGTGGTAATATTCAAATGTAAAGCTATGTTTGCAGTTTGCACTCATGCTTGCCTCCGCAGACGGGGCGTgagcatacagacaaaattaactgtgaggaatcaagaagacaacaagtgtaaaccatagaccaggtgtaagccatgaatcaacctccacaatgaggattgtaattatctgtaaactcatatctcatattcgtggacaactttattacatttgtatatgccttgtaaagtgaatgcacatgcattacaaagaaaGTAAGTAAACTATTTGATTCGGCTGGCAATCTACTACCTATTTACCATCTATGACCTCCTGTTTCTAGATTGGCCTATTTTGTATAATCATTTAACGTTATTGACCACTACTGGTTCTAGGTTGAATTAACAACAACTCCCTTCCTTGTCCTGCAGCTGAAGCAGACTCCAGCAGATGATAATCCCATCTTCTTTCCGACTGACTCTGAGTACGACTGGTTGATGGCCAAGATTTTTGTGAGAAGTGCAGATTTCAACGAGCATCAACTGAATGTTCATCTGCTGCGCACTCATTTGCTGGCAGAAGTTTTTGCAGTGTCACTGCTGCGCAACGTGCCCATGGTGCATCCGTTGTACAAGGTAACTGAAAGGGAGAAATACTTTTACTGTAGTTTGATTTTGACAAGTTGCTTATTTCTGTGTCTTACAAAGTTAATGAATCATAatcctgatgagtgtccggaaatatgaacacataacacccattctccactcacgacactagctcccttactcattccggattgactgcaaagtcgaactactaacccatgaatgcataaatggtcatgcacctccctacttaaaagaactcactactcccccaaacctccacccgcaccatcagcatcaggtggtcagagagactgttccataagcatatggaacagtctctctgatcaccaaagggaaacacagacactggactcttttaagactggcctaaaaacctttttattgaggaaggcgtttatgactttgagttgagtactattaacagttaGTTTTAACAACTGgctctgtggcactctgagaatcttgaatgaagattgccttacaaatagaatgcattattattattggattatAAGTATTTCACACTGCTTAATATTGTAGAAGCGTCAAGAAGTTAACAGAGTTTTCGTCTTTCCCTCAGCTCCTCGCACCTCACACTCGCTACACTCTACAGATCAACAGCTTAGCTCGAGCTCTTCTCATATCTGAAGGTGGATTTTTCATGAAGGTAAATGAAATTAACAACATGCTCAGTATGGCCATAGTGTATGAAGCTGAGCAAATGTAATGTTTAAGGTAAGAGTATATCCAGGCATAAATAACCAAGATATTCTCTCTCAGATCTGTGATGTATTCACCAAAGTTAAGTATGACTGAAATCTCAAGTTTTTTCCACACATTTGATTGCCTCCTAGTTTGCAGCTTCTGGTGGAAAGGGTAAGAGGACACTCCTGAAGAGATCACTGTCCTCAATGACTTACAGCTCCCTCTGCATACATGACAACATTGTTGCTCGTGGTCTGGAGGACGTTCACAACTTCTACTACAGGGATGATGGACTCAAGCTTTGGGATATCATCTACAGGTATTATAGGCATTCTGTTGCATATTATTACAAATTCATGTTTTTGTGATTTGCATATGTGTGAATTGGTCCAAtttagaggtatatatttatatattttaactttaaaacagccgggctaactgtttccagtctttatgctacgctgccaccctggttgtagatctatactatgtgagagtgatattgatcttctcatctcacaatcaacaaggaagACACTTGGTAAGTTTGTAAAATGTCAAACTATTTATATATAATTGTGTGATCCACTTTGTTGAATAAGCTATAGCACCAACTTCCTAAAGAGAACATACCTGATTATTGGATGGCCTTATGTTGTCTTACAAAAGAATGTCTTACTACCGAGTGAGTATAAAAAAAATGGATAGTTCAACTGGGATTGTGTTTAACAAAAGTAATCGACATTTCTCAAAGGTTTGTGCAGGGAGTGCTGAGCTTCTACTACAAGAATGACGCTGAGGTCCAGAAAGACTCTGAACTGCAGAAGTGGATTTTGGACATTTTTGAACATGGATTCCTTTCCAAAGAAAGCACAGGTGCGCTTTAAGGGGATTGTTTAGAGGGATGTTGTTTATTATCAAAAGACAGAGGGCATCATATACTGTACAGAATGTAACAGACCCTTCAGGATAAATTGTGATATGGGGCTGTTGAGTctctcaacatggatacagctgagccggtagctatcagctaacagtgataacatcacaaacaacagcaacagtgctgactgagctaatattcttaacctggggggggggggggggggtgctggagggtgggtgctacgcttacttgatgacaccatgggtcaggatggcattattaggctaactgccatatgagtgcaatacagagcagcaaccttgacctaaccggGTAAACACTGAGAAGCTTTGATTGCAATACGCAGAGAGGGGGAGCCATTAGCCTAGTCTATTATTCCAGTAAAAATGGTTTCTTACTGCTATACTGAGTCTTTGAATCCAGAGTACACAATCTTTAGTAAACACACTTTATTCTCACTAATTCTCAGGAATTCCCCAGAGCTTTACCACCATGGCTGAGTTGGTCAAGTTTGTCACCATGGCGATCTTCACTTCCTCAGGACAGCATTCGGCTGTGAACACTGGACAGGTAAGGTCTTTCAATTTAGTTATAATAATGCTATTTATGTGGAATGGGTTCATCAGGTTGTCGCTTGCCCTGAAGTCTTTCACATAAACAAGAGTctacagccatgcttgcatgactctttggctgcacgttggcacgatgatgcttggagctaaatgcCACGATTGCTAACACTCACAATGACAAGGTATATGGCTATTAGCCTACACTATTGAACATACAacaaatgtattcagatgatagtccaaaatgaagagtagactaataggataacgtaagttatcaccctgaactgaacatgaatgtttaaactgaattaaatgacaacccagcagtagttttagagacatttctctgataacctcaaatgtccacctcatggtggGACCATGAATGTCTGGAAGAAATGTTTACAATCCATATATTTTAGTTTTGACCAAAGTAGCCAACTTTCCTATTACTAATACGGCGTGGCTTCTAAAAATTTTAATCGTCTGTCAATCATTTATTCGTCGCAGTTTGACTACGGTGGCTGGATGCCCAACGCTCCCACCACCCTGCAACTTCCTCCACCAACAAGAAAGGGGACAACAAGCAAAGCCATGATGCTGCAGACATTGCCTAACAAGGGCACAGCAGCAAACGGAATGGCAGTCATGTGGCTACTGAGCAAGCAATCCTCTGACTTCGTAAGTCTCCAAAACCTCATGAAAATAAAATAGAAAATCACATTTCTGTTTGAGTTATGCATAGGTCATGATGTCATTACAAACAAAATACCCTTTTCGACCCACTTGGAAATCCTTGTCACTTCCCAATCTTTTACCAATAGTTTATGTTTGATAAACATTAAATGAAAATGAAAAAAACATGTTTTAAATGTATCATTGATGTCATCAGGTCCCTCTCGGCCAGTACCCACAGGACCATTTCAGTGAGAAGATTCCCTGCAACCTGATAAAGGATTTTCAAGCAAGTCTTCAAGAGTTAAGTGCGGCCATCAAAGCCAGAAACAAGAATCTGGAGGTCCCGTACACATACCTCGATCCAAGGGAGGTAGAAAACAGTGTGGCCATTTTCTTTGGTTACCAGTTTCTAAACGGTGTGAACCCCATGTTGATCCAACGCTGCTCAACCCTGCCCAAAACCTTTcCTGTCAGTGATGACATGGTCTCCCTCAGTGGTCAGTGTAGCTTGGCAGATGAAATGAAGAGAGGCAACATATTCCTGTGTGACTACAAGCGTTTGGATGGTCTGAAATCAAACATCATCAACGAGAAGAAGCAGTACTTGATGGCTCCCCTGGTCCTTCTTCACCAAACACCTGATGACAAACTGATGCCAATTGCTATTCAGCTGAAGCAGACTCCAGCAGATGATAATCCCATCTTCTTTCCGACTGACTCTGAGTACGACTGGTTGATGGCCAAGATTTTTGTGAGAAGTGCAGATTTCAACGAGCATCAACTGAATGTTCATCTGCTGCGCACTCATTTGCTGGCAGAAGTTTTTGCAGTGTCACTGCTGCGCAACGTGCCCATGGTGCATCCGTTGTACAAGCTCCTCGCACCTCACACTCGCTACACTCTACAGATCAACAGCTTAGCTCGAGCTCTTCTCATATCTGAAGGTGGATTTTTCATGAAGTTTGCAGCTTCTGGTGGAAAGGGTAAGAGGACACTCCTGAAGAGATCACTGTCCTCAATGACTTACAGCTCCCTCTGCATACATGACAACATTGTTGCTCGTGGTCTGGAGGACGTTCACAACTTCTACTACAGGGATGATGGACTCAAGCTTTGGGATATCATCTACAGGTTTGTGCAGGGAGTGCTGAGCTTCTACTACAAGAATGACGCTGAGGTCCAGAAAGACTCTGAACTGCAGAAGTGGATTTTGGACATTTTTGAACATGGATTCCTTTCCAAAGAAAGCACAGGAATTCCCCAGAGCTTTACCACCATGGCTGAGTTGGTCAAGTTTGTCACCATGGCGATCTTCACTTCCTCAGGACAGCATTCGGCTGTGAACACTGGACAGTTTGACTACGGTGGCTGGATGCCCAACGCTCCCACCACCCTGCAACTTCCTCCACCAACAAGAAAGGGGACAACAAGCAAAGCCATGATGCTGCAGACATTGCCTAACAAGGGCACAGCAGCAAACGGAATGGCAGTCATGTGGCTACTGAGCAAGCAATCCTCTGACTTCGTCCCTCTCGGCCAGTACCCACAGGACCATTTCAGTGAGAAGATTCCCTGCAACCTGATAAAGGATTTTCAAGCAAGTCTTCAAGAGTTAAGTGCGGCCATCAAAGCCAGAAACAAGAATCTGGAGGTCCCGTACACATACCTCGATCCAAGGGAGGTAGAAAACAGTGTGGCCATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305	Lipoxygenase	Lipoxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000907	Family	Lipoxygenase	Interproscan
IPR001885	Family	Lipoxygenase, mammalian	Interproscan
IPR013819	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020833	Binding_site	Lipoxygenase, iron binding site	Interproscan
IPR020834	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR036226	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771	LIPOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019369	Biological Process	arachidonate metabolic process	Interproscan
GO:0019372	Biological Process	lipoxygenase pathway	Interproscan
GO:0034440	Biological Process	lipid oxidation	Interproscan
GO:0043651	Biological Process	linoleic acid metabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0051122	Biological Process	hepoxilin biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-