Gene detail

Detailed information of HS21346 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21346	LIPOXYGENASE	chr24	10268190	10275996	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21346

ATgGTGGACTATAATGTGACCGTATCCACTGCCAATCTCACCACTGCCGGCACCTTTAGCGGTGTCTACATTAAGCTGGTGGGCACAGATGGGGAGAGCGAACGCAAATGGCTCATTAGCATCAAATGGGCTCTTTCGTTCATCAGAGGAGCAGTAAGTCTGAAATATCCTTCTCCAAATATATAACACTGtACCTCAATTTAAGATTATTGtATTGAATAAaAATCTAGAAAAGCTGATGTAAACCTCATTCAACTCTGACTCATATGTGCTGCGCTGTAACTCTTTAACTCACAGCCACAAAGGTGACCAAAGCAACAACACAAATCCCATTAATGAGCTTATTTCATTACATTTTATCTTGTCCACCaTTCTAAATTCAATATTGTATGcTAACTTTTGTGATGATACAGCTCAGTTTGTGCTcATCGAATACATTGTTTCTCCCATATGAATGTTTCCAACCCATTTCTGTCATTCCAGGTGTCCAGTTTCACCGTGTCCTGCCCTGTCTCCATTGGAAAGCTAGTCCTAATAGAGATAGAGAAACCGCCTTTCCTTCTCTTCTTTGAAGACTCTTGGTTCCCTGCCAAGGTGGAAGTGAATTCTCCTGAGGGTGACACCTACAACTTTCCCATCTACCGCTGGATCACTGACAATGAGGTGCACCGCTTTAGAGAGGCAAAAGGTTTGTGTAAATTAGACTGAGTCTTCGTCAGACATCCAGTCTGCTGcTTACTGACTACGGAAGACATAAAAGAAAGACAAGTTATTCTATTAGGGTTGAGTAACtAACACGCTGTATTTGTCAACAATATCAAATCTTGTAAATCTTTCTTTCTTTAAGCTCTGAGAgTCTTTGAAGACAGCCATCcTCTTgGCAGGTACAGTCGGGAGCAGGAGCTGAAGCAAAGAGAGGAAGACTATCGGTGAGCGATCAGAACTTGTACACTTTGTCACTTTATCCACCCTAAAACTAAcatctacaccCTATTGGGTGAACATCAACCCCTATATGACATTGTTACCCCTACCAGGGTTTATTGAAATGGATTTAGCGAAATTGCAATTGAAGTTGAGgATATATAATGCTTAcATACTGTTACACCCAGAGCTTCTGGGtagttctgtgttcactgtctgtttctgttgtgttgtctgtcactcaccttgtctgttgtttcagactcctccctcctcgtatgccaacctcctgtatgattgcaagccccgccctcattgtttccacttgtccctcgttcccctgtgtattgaatctgtgtcaaccccttgtccagtgtcagtttgtctctaacgttttgctagtaaagacctttgttttcctgaatctgactactgcttcttgtcatctgcttttgagtcctattccatgtggctcccagccaTTCCCTAACACATACTAAGTTAAATCTGCATATACACTGGTATATGTGCAAAGTTCCTCATTCGCTGCTCCTCTCTATCGTTTCCAGTTGGGATGTGTATCaGGAGGGAATACCTCACTGCATCAAGGCAGAAAGcCcTTTTCTCTGCCTGATGAGGTCCGCTTCTCCTTCACAAAGACCACAGAGTTGCTCTACACAgTGTCCgCCGGGTGAGaTCTTCACTTCTGTCATATCTATCTAtaTAGATGTACCTGCCGATTAAATTTATTTAAGGCATAATAATAAAGTTAATCTATGCTTTTATTTTCTAGGGTGGCTGAGCTGCAaCTGAAGGGACTTTCTGATTCCAAGGAGAACTGGTCTGATATTGAAGCTATCGATCAGGTGTTCTGGTGCAAACATACTGACATATCAGGTACTATTATGGCAGTTAAATACTTGATGCTGTATACATGATAGTGCATTTAATTATGTTCATTCAGATCaCCATAATTATATCTAGAACATGTTATAATTGTTTTATCACTTGATAAACAGGAACAAATTTACAGTATTTAATTGCTTACAATTTAGATTTACTATtTGTTTATAGTCAAATaTAGATTGTAAGCAATTAAATACTGTcGATTTCTGTCCAGCCATGTCTGTAACTGCAACGTGCAACACATTGTTTCACTTGCAGTGTTTAGTTAAGGTGATAATTGTGATGgAACAATATTTTCTAGCACAAAGTTTAAAACTCAATAAAGGTCAACTCTGCTTTTTTTCCCAGACTATGTCCGTgATCATTGGAAGGAGGACGCTTTCTTTGGCTACCAGTTTCTAAACGGTGTGAACCCCATGTTGATCCAACGCTGCACAACCCTGCCCAATACCTTTCCTGTCAGTGATGACATGGTCTCCCTCAGTGGTCAGTGTAGCTTGGCAGATGAAATGAAGGTGAATGTCTTCACTTTGATTAATCTGAGAGACATATTTAGCTCCATGACACGTTCAAATGCGAAATGCATGTTGAACTTACATGTTCACTTTCATGTGAGTCAAATTATTTCTCATCCTCATTCAAATTAAATACAGAGCGGCAACATATTCCTGTGTGACTACAAGCGTTTGGATGGTCTGAAATCAAACATCATCAACGAGAAGAAGCAGTACTTGATGGCTCCCCTGGTCTTGCTTCACAAAACACCTGATGATAAGcTGATGCCAATTGCTATTCAGGTGAGATAACACTCATGTAGCGTATTTTAGCTATGACTCgTCCAGGACGGACAGACATGCAATACTGTGGATGTTATATGTACAGACAAGATATAAATACCTGTAGTTTAAATTACACAAATAGAGTGCAAACAgatcctgaaatttcccgactgtgggactaataaaggattatcttattttatcttatctTATATGACTTGTGTGGATCAGAGAAAAAAAGTATTTTCATTCCAATTGCtAGCTAAGCTAACTGAAAAGCAGATGAAATCTATAGTAACACTCAACAATTTCAGATATcTCTTGAAATGTTATTGACCACtACTGATAATAGATTGAATTGATTTAATGAACCACACCCCTTCTTTCCTGCAGCTGAAGCAGACTCCAGCAGATGATAATCCCATCTTCTTTTCTACTGACTCTGAGTACGACTGGTTGATGGCCAAGATTTTTGTGAGAAGTGCAGATTTCAACGAGCATCAACTGAATGTTCATCTGCTGCGCACTCATTTGCTGGCGGAAGTTTTTGCAGTGTCACTGCTGCGCAACgTGCCCATGGTGCATCCGCTGCACAAGGTAACTGAAAGGGAGAAAgACTGAACTTGTACTATAGTTGATCATCATTGAACCATAATGTGTTCGTGTATATATATTTTCAAGTATTTCACACAAATGGTAtAGAAGCATCAAGATGTGTGCTTTGAAGTTAACAGTTTTCCTCTTTCCCCCAGCTCCTCGTACCTCACACTCGCTACACTCTACAgATCAACTACTTAGCTCGAGCTAAACTAATATCTGACGATGGATTTTTTACAGAGGTACAAAATGACAAACACCTAATTACCAAAACATATTTTAATATTTTCAATTCCATGTACATTATTTATCTCTcACTaTGATCCTTACATATTTCATTGTCTCGTAGTATGCAAGTGtTGGTGAGGGTACgAGGACACTTtTaAAGAGATCCCTGGCCTCAGTGACTTACAGCTCCCTCTGCATACCTGACGACATTGTTGCGCGTGGGCTGGAGGACGTTCCGAACTACTACTACAGAGACGATGGACTCAAGCTTTGGGATATCATCCACAGGTAGTACAGGTGTCCTGATATCGGGAAAACAAATGcTCGAAATCCTGCCCTCTATTAGCTAGCTTTTATTTGGTTTAGCGATGaGTGACAAGGTTTTAAAGCAGAGAACACCGaCAGACGCTGCAGACTTAATAATAGTCCTAATTCCGTACAAAAGTTTGCAGAGTAACTCATCCCACAGcTTtGCACACATGCGTAAAATGCAAGTTTCaGCAATATTTTGGGGATTGTTTGTATTGCACAGAATATTCAGAGCGAGAGTGAAGAGGTAACTGCAACAGAGTGAGAGGGAGCAACAAAAATGTATTTTGCCTTCAGTCCCaCCATTTTTACTCTATACACACCATTTTTGGattcaattcagtttatttgtatagcccaatttcacaaattacaaatttgtctcggagtgctttacaatctgtacacatagacatccctgccccaaaacctcacatcggatcaggaaaaactcccaaataacccttcaggggaaaaagggaagaaaccttcaggagagcaacagaggaggatccctctccaggatggacaggtgcaatagatgtcatgtgtacagaaggacagatttagagttaaaatacattcaatgaatatgacagtgtatgaatagttggtagtaggcatattccacgatccatcaggaggtagagaggaggagtgggcggagtctcaacagtcccccagcagcctatagcagcatatcaaggggccggaccagggcacacctgattcagcaccaactataagcactgtcaaagaggaTTAAAATACTgagattagaggagcaaaagatccacagttttaagatgctcacattttaaattccacaaatataacaagcatatcaacgcgttcggcttgaaatccagggtttaacagatggttttgtagaatatccactaccagtcttaagattgcctttgtcctccacccctgtgtctATGACACAATAGCTGCTCTCAAGTCCATCACAAATACATGGCGTATATATATTGCAATGTCTTACAATAGTAGCCAACAATGGATAGTTCTTATGTAACATTTTGTTTCTCATAAAGAATcAGTCAAGCTGCAACTTTTCCcTTTCTTTTGCCCTTTACATACAGTTTCTTTGCATACTTTTACAGTTAGtGCATCTTGATGCAATTTCCTCTTAAAAGTTTATCTTGAAAtGTAcAGTATGCTCTATAGCAGTCACCAGAGACACTGCTGCAAGTTATATTGATAATGCCTTAAAATAGGGTGATACAGAGTTCAGTAAAGTAGTGATATGCCTCTTGAGTGAGTATATTGGCAtTTGATGACATTTTCTGAAATGAATCAGCCTGAACTtgtcatgtgttgtcgtagcgagagagaggacccaaatgccgacaattcttcgaaaccaggatttaattctactagaaacaggttacagacaggactagtatgacaacacaaactacatggtacgaagccaccagaaatggacccagccttcataaatcaggaccagtttacggtgacgttcttctccagaacatgttggagtccctccgggcccttgcctctgtGCTTCAGTCCACATCGGTTCGTGCTCCCCGTGTCCTGTCGGCACCTCGGCCGACTCCTGCTCTCAGTGTCCCGTCGCCGGCTCCAGTCCCCGGTGTTCCTtcatgtgttgtcgtagcgagagagggcccaaatgcagacaattcttcaaaacgaggatttattctactagaaacaggctacacacaggactagtaggactagtaggactagtaggactacacggtacgaagccacactgggaatgagacgaacagggtttaaatacacaggcaaggtgaaggtgattggacactggggaacgagacacaggtggacacaatgagggtggagctagtaatcacacagaaggaaacaatcaggaccagggcagacaatcacagggagacagacgacacaaggacttcaaaataagacacaaaacgagacagaaacgccgggtcatgacaGAAGTACTTTGATTGAGAACCTCTGCTCAATTTTGGAGGGAGCATCCCTAGCCTTCAAATTTGAAGGTGTCAGTGTCAATAAAAAACTATCATTaGTTAGATTGACACAAAGACAGGTGAAGTCTGAATGTTATaATTTgTATTaTGACAGAGGGCACTATAATATGAAATAACCATTTATTTTGGGGATTTTAATTAAATGATTAATTCAGCACATATACTGAAATATACGTTTTTACTTTCTCTCAAAATGTTGGCCAAGAGATGAGAAGATCAAAGAgCATGATATAGATCTTCTCATCATACTCTTAACAAGAAAGTGTCAAACTATTTCTTTAAAGTTGTTTGATCTACTTTGTTGAATAAGCACCAAATTCCTAAAATTAACATAACTGATCATTGGAAAGAAATgACCTTATGTTGGCTTACAAAATAAATTaTTAATACTgTAGTGAGTATAAAGAAATGCATAATTTAACTGGGAATGTGCTGAACCGAATTTATCAACATTTCTCAAAGGTTTGTGCAGGGAGTGCTGAGCTTCTACTACAAGAATGACGCTGAGGTCCAGAAAGACTCCGAACTGCAGAAGTGGATTTCAGATATTTTTGAACaTGGATTCCTTTCCCAAGAAAGCACAGGTGGGCTTTAAAGACAAGCTCCATCTTAATGATGATAAATGGGCACATTTATGAACCATTATATGATGTTAATGCAAACCGAATCATGATCATCATCCATATTTTGTCATCTATGTATTAAATACTTTATTCCTGCTAATTCTCAGGAATTCCCCAGAGCTTTACCACGGTGGTGGAGTTGGTCAAGTTTGTCACCATGACGATCTTCACTTGCTCAGGACAGCACTCGGCTGTGAACACTGGACAGGTGAGGCCTTTCAATTCAGTTGTAATAATGCTATTTTTCTGGATTGGATCTTTGAGGTTTTGACTGTTACCCTGAAGTCTTTAACATAAACAAGAGTctacagccatgctagcggaactaaactggactttggcacgatgatgctttgagataaacacaacaactgctaacatacaatggcaatgctaacgtgttgaattttagcaggtatattgtttataagatcaacatcttcaattaccttgttaacatgcgcacatcagcaaacgttttctaatcggcacaacacagaaagtatagctgaggctggtagtaatgtcattcattttgcaggtatttgTTTaagttttggaaaaacaaaaactttgatatggcaaatgaaaagtccaccaaagtgattagagtttgtccgaaggtaaacataaatgtcgaacccaaatggaatgacgatccaactgaaagttgtcaagacattgctttgaaaaccaagaatgttattcttatcatggcgctagaggaaaaatcagtggatcatcaaagtcatcagtattaatcctcttggaaccatgaatgtctttggtacaaTCCAATGTTTCAATGTGGACCAAGGTAGGAGACAGACTGACATATGGCGTAGCTTCAAACGGTGTTTACCAGTCATCTGTCTATCATTCATTCGTCACAGTATGATTATGGTGGCTGGATGCCCAACACTCCCATCTCCCTACAACGTCCTCCACCAACCACAAAGGGGACAACAAGTGAGGCCACGATGCTGCAGACATTCCCTGATGTCAAAACCACgGTTATGGGATTGTCTGTATTGTGGCTACTCAGCAAGAgGTCCACTGACTTTGTAAGTGCCCAAGTCTTTAATCACATAAATCAAATTAGAGTCCTGCTCACTAAAACTGTACATTAATGTATATTGCCAAAAGTCTGTTTAAAAATGTTTAAACATTAATTTTTTGAATGTATCATTGATGTCATCAGGTCCCTCTCGGTCAGTACCCAAAGGACCATTTTAGTGAGAAGATTCCCTGCAAGCTGATTGAGGATTTCCAAGGAGAGCTTCAAGAGTCCAGTGCGGCCATCAAAGCCAGAAATGAAAATCTGGAGATCCCATACACATACCTGGATCCAAaAGAGCTaGAAAATAGTGTGGCCATTTGAATgGTGGACTATAATGTGACCGTATCCACTGCCAATCTCACCACTGCCGGCACCTTTAGCGGTGTCTACATTAAGCTGGTGGGCACAGATGGGGAGAGCGAACGCAAATGGCTCATTAGCATCAAATGGGCTCTTTCGTTCATCAGAGGAGCAGTGTCCAGTTTCACCGTGTCCTGCCCTGTCTCCATTGGAAAGCTAGTCCTAATAGAGATAGAGAAACCGCCTTTCCTTCTCTTCTTTGAAGACTCTTGGTTCCCTGCCAAGGTGGAAGTGAATTCTCCTGAGGGTGACACCTACAACTTTCCCATCTACCGCTGGATCACTGACAATGAGGTGCACCGCTTTAGAGAGGCAAAAGCTCTGAGAgTCTTTGAAGACAGCCATCcTCTTgGCAGGTACAGTCGGGAGCAGGAGCTGAAGCAAAGAGAGGAAGACTATCGGGTGGCTGAGCTGCAaCTGAAGGGACTTTCTGATTCCAAGGAGAACTGGTCTGATATTGAAGCTATCGATCAGGTGTTCTGGTGCAAACATACTGACATATCAGACTATGTCCGTgATCATTGGAAGGAGGACGCTTTCTTTGGCTACCAGTTTCTAAACGGTGTGAACCCCATGTTGATCCAACGCTGCACAACCCTGCCCAATACCTTTCCTGTCAGTGATGACATGGTCTCCCTCAGTGGTCAGTGTAGCTTGGCAGATGAAATGAAGAGCGGCAACATATTCCTGTGTGACTACAAGCGTTTGGATGGTCTGAAATCAAACATCATCAACGAGAAGAAGCAGTACTTGATGGCTCCCCTGGTCTTGCTTCACAAAACACCTGATGATAAGcTGATGCCAATTGCTATTCAGCTGAAGCAGACTCCAGCAGATGATAATCCCATCTTCTTTTCTACTGACTCTGAGTACGACTGGTTGATGGCCAAGATTTTTGTGAGAAGTGCAGATTTCAACGAGCATCAACTGAATGTTCATCTGCTGCGCACTCATTTGCTGGCGGAAGTTTTTGCAGTGTCACTGCTGCGCAACgTGCCCATGGTGCATCCGCTGCACAAGCTCCTCGTACCTCACACTCGCTACACTCTACAgATCAACTACTTAGCTCGAGCTAAACTAATATCTGACGATGGATTTTTTACAGAGTATGCAAGTGtTGGTGAGGGTACgAGGACACTTtTaAAGAGATCCCTGGCCTCAGTGACTTACAGCTCCCTCTGCATACCTGACGACATTGTTGCGCGTGGGCTGGAGGACGTTCCGAACTACTACTACAGAGACGATGGACTCAAGCTTTGGGATATCATCCACAGGTTTGTGCAGGGAGTGCTGAGCTTCTACTACAAGAATGACGCTGAGGTCCAGAAAGACTCCGAACTGCAGAAGTGGATTTCAGATATTTTTGAACaTGGATTCCTTTCCCAAGAAAGCACAGGAATTCCCCAGAGCTTTACCACGGTGGTGGAGTTGGTCAAGTTTGTCACCATGACGATCTTCACTTGCTCAGGACAGCACTCGGCTGTGAACACTGGACAGTATGATTATGGTGGCTGGATGCCCAACACTCCCATCTCCCTACAACGTCCTCCACCAACCACAAAGGGGACAACAAGTGAGGCCACGATGCTGCAGACATTCCCTGATGTCAAAACCACgGTTATGGGATTGTCTGTATTGTGGCTACTCAGCAAGAgGTCCACTGACTTTGTCCCTCTCGGTCAGTACCCAAAGGACCATTTTAGTGAGAAGATTCCCTGCAAGCTGATTGAGGATTTCCAAGGAGAGCTTCAAGAGTCCAGTGCGGCCATCAAAGCCAGAAATGAAAATCTGGAGATCCCATACACATACCTGGATCCAAaAGAGCTaGAAAATAGTGTGGCCATTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000907	Family	Lipoxygenase	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR001885	Family	Lipoxygenase, mammalian	Interproscan
IPR013819	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020833	Binding_site	Lipoxygenase, iron binding site	Interproscan
IPR020834	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR036226	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771	LIPOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019369	Biological Process	arachidonate metabolic process	Interproscan
GO:0019372	Biological Process	lipoxygenase pathway	Interproscan
GO:0034440	Biological Process	lipid oxidation	Interproscan
GO:0043651	Biological Process	linoleic acid metabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0051122	Biological Process	hepoxilin biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-