Gene detail

Detailed information of HS21226 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21226	LEUCINE AMINOPEPTIDASE-RELATED	chr24	6411027	6416465	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21226

ATGACGATGCTTCTTGCGAGGAGAACCGTGCAGACGGCGGCGCGGACAAAATGCTGCAGGTCGTTCTCCGCGTCACAGACTCACCTGAACGAGAAGAAAGTAAGGAGTCGTTAGCCGTGAGCGCTAGctgttagcctgtcaaacataagctgataggcactctctctctctctctctctctctctctctctctctctctctctctgtgtgtttgtgcacaagttacttccaatcATCAGCCACTCGGTTATTTaATTGGCTTCAATTGTGAATGTATTTAACAGCTCTATTTTAGCACAGTCAACAGTCAGTGTAATCTGTGAGGTTTGTGGATGAGTTACAAGCAAGCATTTgTATTATTAGTGTGAGATCTATTGATCTGTCAATTTAGAGAATTGTAGATTGATCGGTTTTTCTTCTTCTctCTCTCtTTCTTGTGTGCCTGCAGGGTCTGGTGCTGGGAGTGTTTGAGAAGGAGGGAGAGGAGGGCGGCCTTCATCTGACTGAAGCGGCTGCAGGTTTTGACCAAAATCTTTCTGGAAAACTCTCCGAACTGCTGAAAATGTGAGTCTGTGATGTTTGTGAGCTGTCAGTACACGTCTTATTCTGTGATTATAACAATAAGGGTCCTGCAATGAATTCTACCTTCATAAAAGTTATCAGTTGTAGGCTGTTAACTTATTATTAATTGATTCATTTTTATAATTAACTTATGTTTAATTGTAACGATGCATGATTAAAATGTACACAGGCCTACAAAAAATGACCATGAATATGTAGGCCTGTGTACATTTTAATCATGCAAGTCCCACCCAGAGAAATGCACAGAGTAAACCTCACTGATAAGTTAAAAAAACAAAAGAATCGATACATCACTGATATTAAGAAATAAGGTAAGGATCGAGATACTTTATAGTCATCCATCTATAAACAGTGCACATAGGAACAACATTGTGTTTCCCTGGTCAGGACAACATAATAAATGATGCAACATTCAGATCTTGCAATGTTGCAAAAACAAGATACAAAATGAGGTAACAGTACACCTTTATTATGCAGTACAAAGGGTTGAAATACATCAAGTAGTGTAAACAAGACTGCCAAAAACCTCTCTGGTGCATCCCTGGAAACCACGTTAACACGGTGTCTCTGTCTAATCGGTTGCGCAGGTGGTTAATAAACTATTTTTTGATTGGCTCTCTCCAGATCTGGACCGGCTCTCAAGAAAGGCAAAAGCAGAATATTTTATGGAATCCACAAGGTAACGAGGAGTGACATCAGAATAAGACAAACCCGGTCTCTTGACAACATCGGCGTAATTCAATCTTCTCTGTGTCTTCTCCAGGACTTCCCGTGCGTCGCAGTCGTCGGGCTTGGTAAGACCAGTGCGGGTGTGTGTGCGGCAGAAAACTGGGACACCAGCAAAGAGAACATCAGACAGGCAACGTCTGGTAAGACACGTTGTCTcTGCTCGTCTTCGTACGGGCAAATATTTAAATTTCATGCAATGGACAATAAAGATGTCTTATCTGATCTCACTGGAGTGACTACCTGGCTGATATATTTGCATGTGTCTGTGTGTCTGTGTTCAGCTGGATGCCGGCTGCTTCAGGACCTGGAGGTGAACCACGTGGAGGTGGACGGATGCGGTGATGCCCAATCGGCAGCAGAAGGCGCCACTCTGGGTTTGTTCCAATACGACGAATTAAAAACCAAGAAGAAGACCAAAGTAACCACACAGCTTCATGGAAGGTAGACTAACAAACGAGCTGAAGCACAAAGCCGGGGCGTTTGATACTGCAGGGTTATTcACGATGTACGCAGCATCATGCTAATCAtgtatatgtatttgtgtgtgtgtgtttgtgtatgtACGGGCTTGTTCTTAGTTCCGACTCGACCGGGTGGCAGAAAGGAGTCATGTATGCAGATGGCCAAAACCTGGCGCGGCTACTCATGGAAGCTCCCGCCAATCACATCACTCCTACTGCTTTTGCCAACACcATCGAAGAGAGATTAGCGCTGCATGCTGATCGAGTCACAATAAATAAGAGGTCTGTGAATCATTCATCATTACTGCAGCGTCCCAATTATGTCAGTACTCAGAAAACAACAACAAAGCACGCCGACATGTGAAGTACAGTCCATTGTTTTGATTTGTCGCATTGTTGAAGTGCATTTTAGACGCGTGTGCTCTttaacccttgtgttgccttagggtcattttgacccgactcaatattacaccctccccccgcctttgggtcattttgacccgattcaatgtttcaccctcctgttacctttatatttactaacatattttaccctttgggttcaatttgacgccagcaattaaaacctccagaaaattattagaattaatattgttttccaagtttaagtgtgaggcactttatgtttgtttgttgactaccgaaagaacaccgacattaaacattgaatggggtcaaattaatcctaaggcggggggagggtgtaatattgattcgggtcaaaatgaccctaaggcaacacaagggttaaccgaccagttatggCATTTTAGGACCTTTATAAATAAACGGTTTCTTATTATGTTGCCAGATATTGAATGTCATTTGGCTGCAGAAGATTGTGATTGGCCTTTTTCTTTAAAAAATAAATATTTTTTGAGACCCAAGTGATTGTAAACCAGATCTTCTTTTTTACAATCATAGAAACAATTCTTGACAATTATTCAATCAAAAATAATCTATCGCTTAAAATAAGGTCTTGTCTAAATTgATTGGTTATCCTTTTTTGCACCgTGAAGATagGTTAAAGGAAGACTTTTGGTCTAACGGTTCATTTGTGTCTGTAGGTCTCAGGCCTGGATCGAGCAGCAACAGATGGGAGCGTTTCTCAGTGTGTCTCGAGGCTCAGAGGAGCCCCCTGTCTTCCTGGAGATGCATTACAACGGTGCTCCTGACAGCAAGCAGGCCCCACTGCTCTTAGTGGGCAAGGGCATCACCTTTGACAGGTAAACCATCACAATACACACTCAAGCCCAGTAACTCGCATAAAGAAAATCATTACAAAGCTCACATTAATGTTGTTTTGACTTCTTGGTAGCGGCGGTATTTCTCTgAAGCCGTCTTCTTCTATGGATCAGATGAGAGCTGATATGGGGGGAGCGGCCACCGTGTGTGCATCTATCGTCACAGCAGCAGCTCTGAAGCTACCCGTCAACATTATTGGTAAACGGTTTGACTTTGTAGTTTCTTATACCATAGATTGTAAATTAGAGAATTTATAAATATGAACACCCTGCAATGGATTTTTTAACCACtACATGCACGTaTCATTGATATTGTAATGATGAATTGAAAAGAAATCTCTTAACCTaATTGTTTCCACTGGTAACAATAAATTAGGTCTGGCTCCCCTGTGTGAGAACATGCCCAGTGGAAAAGCTACTAAACCAGGGGATGTTGTCAGGGCCAAAAATGGAAAAACAATCCAGGTGGGTGGAACGAACCATTCCGTGAGTGTGATACCTTTTGTGCATTTACATGTGTGAGTTCAGATGAGCAGGTTGTATTGTTGTTGTGTACAGGTTGAcAATACAGATGCAGAGGGCCGGCTGGTTCTCGCTGACGCGCTGTGTTACGGACACACTTTCAACCCAAGAGCCATCGTCAATGTTGCTACGCTAACAGGTGGGATTTCTTTACACAGTAGTGTTTTGTGATGAGAAACAACTAATGTTTTTTATATTTACATCATATTTGCATTATGTTATGCCATATGTTTAGTTTTTaTGGCAAATCATATTCTTTCAAATTGCTTATATATTTGAGTGATCTAAATACATTCATTTGACTTATAAATATGAGTCTCTGTTTTTTTCCGATGTGTAGAAAGCGGCGTTGGCACGGTCTTTGACCTCACATTAGACTTATTATGGGTTTGTTAAGTTTGATGAAAGTGTAAATAAGTGGAAGTGAATGCAGGAAATTCCTTTGCTAAATCAGAAAGTGAGTTGGAGTTTAAACAGAGGTGTGTTGGAGGTGATGAACAACATACTGTCCCCTCTCTGCTTATCCCCTGTCTATATCCTGCCGCAAAACACATCTTTAAAAGAGGTTTTGGTTGTGTCTAAAGTAAAGAGAACTGTAGaAATTCtAAAGTATCTATAACCCTTAAAATAACAGTttaGGACTATTTCAACCTGTCTCtGTGTTCCCATTCATGACATTCAaGGTCCAGTTGTCGCCTTCTCAAACATTAGAGCTTATAATTAGCTGTTTCTTTGTGATACCAGAGAAGATAAATGAACACTTGAGGTGCATGAAAGTGCTGCATGACTTGGTGTCACTCGTGGTCGCCGTGCAGCGCAAATGATGCAGGGTGACCATCACCAAAACTGTCCAGATACCAGGTCATGTGAGTTCATGTTTACAGCTTGGTAATAATAGTCAGTGTGAACATGAGATGGACCAGAACTAGAAGGCCAGATTTGTAAGTGACCAACTGTCGTTAACTACAAGTTCTGATAATAAGATGTGCAAATATAATGTGTCTGTTTTAAAATATGGTTTCTTTTTTTTTGCTCTTAGGTGCGATAGATGTAGCTCTCGGCTCAGCAGCAACTGGAGTGTTTACAAACTCTGACTGGCTCTGGGAACAACTACACAAGGTATTGTGAATGCACAATAAAcATGCTCCCACCCTCTCAGTCCATCAGCTCCTGTGTTGACTAATGgtgtgtgtgtgtgtgtgtgtgtgtggTTTtGCAGGCTAGTGTTGTGACAGGTGACAGAGTTTGGCGGATGCCTTTGTTCCAGCACTACACCAGACAGGTGACTGACAGCCAGCTGGCTGACCTCAACAACGTCGGCAAGTACAGCCGGTACGTATCTTGCTGCCTGCCGTCATCAGAGGAGtACAGACTCCTTGTGCGTGTATCACCGAAGTGAATAGTTTAACCATATTAGAGTGTTGAACTCTTTGTTATGAGTCTGGaTGTTTGAAATTCATCAAATGATGGTTTCAACTCGTCTTTCGTGTCTATTTCACAATAAGGGCGCATTGTTACTCAAGATAACTTGATCTAGGATTAACGAATCAACAACCAAATGAGCACGCTGAAAATAAAGAGaATTTACAAAACATGATAACAGCATATTAGCCTGAGTTAGTTCAGAACAGGACCAATATGTATTCCCATGGCTTTATTAACCTGAATCTGACTATGTTGGTCATGTTTCTAGGTCTGGCGGCGCCTGCACAGCAGCTGCATTCCTGAGAGAGTTTGTCACAGCTCCTCATTGGGCTCATCTGGACATCGCAGGTGTGATGGGCAACAAAGATGAAGTTCCCTACCTGAGAAAAGGCATGTCTGGAAGACCAACACGTACACTGGTGGAGTTTGCTGCCGGATTGGCCCACAGTGGCATGACGATGCTTCTTGCGAGGAGAACCGTGCAGACGGCGGCGCGGACAAAATGCTGCAGGTCGTTCTCCGCGTCACAGACTCACCTGAACGAGAAGAAAGGTCTGGTGCTGGGAGTGTTTGAGAAGGAGGGAGAGGAGGGCGGCCTTCATCTGACTGAAGCGGCTGCAGGTTTTGACCAAAATCTTTCTGGAAAACTCTCCGAACTGCTGAAAATATCTGGACCGGCTCTCAAGAAAGGCAAAAGCAGAATATTTTATGGAATCCACAAGGACTTCCCGTGCGTCGCAGTCGTCGGGCTTGGTAAGACCAGTGCGGGTGTGTGTGCGGCAGAAAACTGGGACACCAGCAAAGAGAACATCAGACAGGCAACGTCTGCTGGATGCCGGCTGCTTCAGGACCTGGAGGTGAACCACGTGGAGGTGGACGGATGCGGTGATGCCCAATCGGCAGCAGAAGGCGCCACTCTGGGTTTGTTCCAATACGACGAATTAAAAACCAAGAAGAAGACCAAAGTAACCACACAGCTTCATGGAAGTTCCGACTCGACCGGGTGGCAGAAAGGAGTCATGTATGCAGATGGCCAAAACCTGGCGCGGCTACTCATGGAAGCTCCCGCCAATCACATCACTCCTACTGCTTTTGCCAACACcATCGAAGAGAGATTAGCGCTGCATGCTGATCGAGTCACAATAAATAAGAGGTCTCAGGCCTGGATCGAGCAGCAACAGATGGGAGCGTTTCTCAGTGTGTCTCGAGGCTCAGAGGAGCCCCCTGTCTTCCTGGAGATGCATTACAACGGTGCTCCTGACAGCAAGCAGGCCCCACTGCTCTTAGTGGGCAAGGGCATCACCTTTGACAGCGGCGGTATTTCTCTgAAGCCGTCTTCTTCTATGGATCAGATGAGAGCTGATATGGGGGGAGCGGCCACCGTGTGTGCATCTATCGTCACAGCAGCAGCTCTGAAGCTACCCGTCAACATTATTGGTCTGGCTCCCCTGTGTGAGAACATGCCCAGTGGAAAAGCTACTAAACCAGGGGATGTTGTCAGGGCCAAAAATGGAAAAACAATCCAGGTTGAcAATACAGATGCAGAGGGCCGGCTGGTTCTCGCTGACGCGCTGTGTTACGGACACACTTTCAACCCAAGAGCCATCGTCAATGTTGCTACGCTAACAGGTGCGATAGATGTAGCTCTCGGCTCAGCAGCAACTGGAGTGTTTACAAACTCTGACTGGCTCTGGGAACAACTACACAAGGCTAGTGTTGTGACAGGTGACAGAGTTTGGCGGATGCCTTTGTTCCAGCACTACACCAGACAGGTGACTGACAGCCAGCTGGCTGACCTCAACAACGTCGGCAAGTACAGCCGGTCTGGCGGCGCCTGCACAGCAGCTGCATTCCTGAGAGAGTTTGTCACAGCTCCTCATTGGGCTCATCTGGACATCGCAGGTGTGATGGGCAACAAAGATGAAGTTCCCTACCTGAGAAAAGGCATGTCTGGAAGACCAACACGTACACTGGTGGAGTTTGCTGCCGGATTGGCCCACAGTGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00883	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan
PF02789	Peptidase_M17_N	Cytosol aminopeptidase family, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000819	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan
IPR008283	Domain	Peptidase M17, leucyl aminopeptidase, N-terminal	Interproscan
IPR011356	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan
IPR023042	Family	Peptidase M17, leucine aminopeptidase	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11963	LEUCINE AMINOPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008233	Molecular Function	peptidase activity	Interproscan
GO:0019538	Biological Process	protein metabolic process	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-