Gene detail

Detailed information of HS21198 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21198	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	chr24	5439475	5442372	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21198

ATGGACCGCGTCGCTTCGAACGCCTCGGATAGCGCCGCCGTGAAGCTGCGCAGCTGCAGCGCGCTGAACACTCTGCACCACGAGACGCGCCAGGAAATCGAGCTGCTCAACAAACAGATTTGCGTCAAGGACAATATTATTGCGGATTTAAAATCGAGGCTGGGCAGATATGAGCGCATCTGCATGGCCGTGGGGGACAACGAGTCGGTGGTCATCGGGCCGTCCAAGTCTCTGCTGGAGAGCCTGTGCAAAGAGATCCTCAAGCTGAAGCAGAAGCGCAGCGACGGGGAGCTCAAGGCGTCGCGACAGACgGAGGTAGACAACTACATAATAGTTAATAATTAGTAATGCAGTTTGATAAATGGTTTTGTGACGATGCTCCGTGGATTTGAGTGTTTTGTAGTCAGTGGAGTCTAAAATAGAAAAAAGTTAGTACAGTGACAGGGATGGTTTTTAATGTAAgATtCACATaGTCTCTTGGTTAACAGCTGATACGCTTTAAACATATTATTATTATAGCTTAgTGTATTATTTTCAAGTGTAGACGTGTGTGATGTTGTAGTGTTGCAACTTCCTCCTAAATACAAGTACTTATGATTGAGATATTAGATATTAGAAGAAATATTGCAAGCAATGATCAGCATGACAGATTTTATTTAATCCATGTTTTGTGTAATTAAAATTAAAATTAAaataaatcatcatataatatatatatatataatatatataataaataatatgtatatatatattatatatataataaataatatgtatataatatatatatatataagataacacattaagaaccgatgaggcCGTGGAATTAATCCCTCCATGCCTTCCTCCCCAGGAGATCCAAAGGCTGACCGTGCAGCTCCGAGAGAAGGAGCTGGAGCTGGAGAGAGTCAGGTGTCAGCCGGACCACGAGAAGGACCAGGAGGTCCACCGGCTGCGGGCGGACCTGGGGGAGCGGGAGCGGGCCGAGGCCACGCGGGCCGTGCTCTGCACCTCCCTGGCGGAGGAGGCTGACCAGCTGCGCGGCCAGCTCGGCGTGACGGTGAAGGTGTGCCAGGAGCTGCTGGCCAGGCTGGAGACGGATAAGAAGGGGggaggaggaggaggaggaggaggagaggaAGATGTGGCTCAGCAGCAAAAGTCGAAGGAGgtgcgtgtgtgtgtgtgtgtTGAATAGGCCTTTATTGACTTGTGCGTTAGCTCTGTTGTAACCTCTCTGTCACCATTTTCTCGACAGATGCCGGAGTCCTCGgACGTGAGTGGTGCGAACGCCCAAATCTCTCAACTCCAAGAGGAGAATCAACAGCTAAAGCAGCGAGTGGCATATGTAAGTCTTTCAAGGACTAAACGTATATGTTCCgCTGAAATAAAGAACAAAAATAATAATTTATAAACGTGATATTAACGTATAAATGTATTCAACCTCCTTCTTTTTAGGTCCAACGTCTGAATTCTCAGTGGCAGAAGTATGACTCCAGCAGGGAGGACTACATCCGAGGGTTATGTCAGAGGCTGAAGGAGACCTCGGGGCCGGGGCTCGGCTCGATAAGCACCGGTTTGCTTCAACGGGAGATTTCCCGGCTCAACGACTTACTCGAGGAGAAGATGAGCGAGTGTGCGCGGCTGAGTGACGAAGTGGAGGAGATGAAGAGGCACTACAAAGAGCGCATCCAGACTCTGGAGCAGCAGgtctgtgccacctcgtcttctctctacacatatatatatatatatatatatatatatatatatacactaccgttcaaaagtttggggtcacttagaaatgtctttatttttcaaagaaaagcactattttttcaataaagataacattaatcaaaaatacactctatacattgttaatgtggtaaatgactattctaggtggaaacgtctggtttctaatgaaatatctccataggtgtctagaggcccatttccatcaactatcactccagtgttctaatggtacattgtgtttgctaatcgccttagaagactaatgtctgattagaaaacccttgtgcaattatgttagcacagctgaaaacagttatgctggtgatataaactatacaactggccttcctttgagcttgaagtttgaagaacaaaattaatacttcaaatattaatcattatttctaaccttgtcaatgtcttgactatattttctattcaattttcaattcatttgataaataaaagtgagttttcatggaagacacaaaattgtctggatgaccccaaacttttgaacggtagtgtatatatatatatTACGCTACATTGAATCAGGCAAACGGCTCTTCAGGCTTTGGACTAAATGTTGTTTCTGCCCCTCCATCAGGTCCTCATCTACGCAGACGACTTTAAGTCCGAGCGCGCCGACCGGGAGCGAGCACAGGGCCAGATCCAAGACCTGAAGGAGCAGATCTATCAGTTGAAACAGCAGCGACACAAAAAGGTGAGACGACGGCCCTCGAAACACGATAACATGATATTGCACATCCGGCGTCGCCTTGTGCGCTCCTTTACAGCGTCCGTAACCCGTCTTGCCTTCAGCAGGGAGCGAGCAGAGAGAGCAGAGAAGTGGTGGTTCCCATGTGCCGCGTGCACATCGGGCACAGGATCACCCCGCGGCGACACAAGGACTCTCCCGACTCTCCTCTGTTGAGGAccgcggccgagctgcagcaacagcccgccgccgccgccgccgccgccatcgcagcggcagccacgccgagccccgcGTGGAGCGAGCGGCCCGGCCTCTCGGAGCTCCAGTGCCCTCGATGCTTCGCCACATTCAGCGACACGGACGCCGCAGAGTACATGAACCATTGGGAAGAGTGTGCCAGAATAATGGACCGCGTCGCTTCGAACGCCTCGGATAGCGCCGCCGTGAAGCTGCGCAGCTGCAGCGCGCTGAACACTCTGCACCACGAGACGCGCCAGGAAATCGAGCTGCTCAACAAACAGATTTGCGTCAAGGACAATATTATTGCGGATTTAAAATCGAGGCTGGGCAGATATGAGCGCATCTGCATGGCCGTGGGGGACAACGAGTCGGTGGTCATCGGGCCGTCCAAGTCTCTGCTGGAGAGCCTGTGCAAAGAGATCCTCAAGCTGAAGCAGAAGCGCAGCGACGGGGAGCTCAAGGCGTCGCGACAGACgGAGGAGATCCAAAGGCTGACCGTGCAGCTCCGAGAGAAGGAGCTGGAGCTGGAGAGAGTCAGGTGTCAGCCGGACCACGAGAAGGACCAGGAGGTCCACCGGCTGCGGGCGGACCTGGGGGAGCGGGAGCGGGCCGAGGCCACGCGGGCCGTGCTCTGCACCTCCCTGGCGGAGGAGGCTGACCAGCTGCGCGGCCAGCTCGGCGTGACGGTGAAGGTGTGCCAGGAGCTGCTGGCCAGGCTGGAGACGGATAAGAAGGGGggaggaggaggaggaggaggaggagaggaAGATGTGGCTCAGCAGCAAAAGTCGAAGGAGATGCCGGAGTCCTCGgACGTGAGTGGTGCGAACGCCCAAATCTCTCAACTCCAAGAGGAGAATCAACAGCTAAAGCAGCGAGTGGCATATGTCCAACGTCTGAATTCTCAGTGGCAGAAGTATGACTCCAGCAGGGAGGACTACATCCGAGGGTTATGTCAGAGGCTGAAGGAGACCTCGGGGCCGGGGCTCGGCTCGATAAGCACCGGTTTGCTTCAACGGGAGATTTCCCGGCTCAACGACTTACTCGAGGAGAAGATGAGCGAGTGTGCGCGGCTGAGTGACGAAGTGGAGGAGATGAAGAGGCACTACAAAGAGCGCATCCAGACTCTGGAGCAGCAGGTCCTCATCTACGCAGACGACTTTAAGTCCGAGCGCGCCGACCGGGAGCGAGCACAGGGCCAGATCCAAGACCTGAAGGAGCAGATCTATCAGTTGAAACAGCAGCGACACAAAAAGCAGGGAGCGAGCAGAGAGAGCAGAGAAGTGGTGGTTCCCATGTGCCGCGTGCACATCGGGCACAGGATCACCCCGCGGCGACACAAGGACTCTCCCGACTCTCCTCTGTTGAGGAccgcggccgagctgcagcaacagcccgccgccgccgccgccgccgccatcgcagcggcagccacgccgagccccgcGTGGAGCGAGCGGCCCGGCCTCTCGGAGCTCCAGTGCCCTCGATGCTTCGCCACATTCAGCGACACGGACGCCGCAGAGTACATGAACCATTGGGAAGAGTGTGCCAGAATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12180	EABR	TSG101 and ALIX binding domain of CEP55	Domain	Interproscan
PF16516	CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022008	Domain	TSG101 and ALIX binding domain of CEP55	Interproscan
IPR032419	Domain	NF-kappa-B essential modulator NEMO, CC2-LZ domain	Interproscan
IPR034735	Domain	NEMO, Zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31882	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034134	Biological Process	toll-like receptor 2 signaling pathway	Interproscan
GO:0034138	Biological Process	toll-like receptor 3 signaling pathway	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071222	Biological Process	cellular response to lipopolysaccharide	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-