Gene detail

Detailed information of HS21177 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21177	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	chr24	5068073	5073721	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS21177

Transcript

HS21177

ATGTCTGATGATCTTTCATCAGCGTCAGAAACGTGCAATGGGAGGAAAAGAAAGCGCGGCGCCCCCTCGCCGCACAGGGAGGCCGGGAGATCGAAAGCAGCGGAGGAAGGCGAGGAAGACGAGGAGACGCCGACGCGCGGACACTCGcCGAGTGTTTCTGTGCTGCCCGACCGCCTTCAACAACCCATTACACCCAGTGAGCTGACGGAGCTGCTGCACTACGCCGCGCTGGGCCAAACGGGTGGCGTCAAACAGCCCAGGTGACGACTGTGGGAGGAGGATTCATCGACTTCATCAGCTCTCATGAAAATAATCTGAATTATCTGGGCTCtctgttttcaacctcccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctcagctggtgttgcctccagcatcagaagagggttaaagctgtgaacGTGGTGCTCGTGGAGGGGCTGACCCAGAGTCACTTCTACCAACACTTCCTCGCCCTGCGGCACCTCCGCACCAGCTACTCCACCGTAAGTAACCGCAGGCGATGCGAATGCACAACGGTTGGAGCGAGGGTGTGTGTCAGCGTTTTGGGTTAACGCTGGACCtttttgttgttgttgttgtcgtcgttgttgtCTGGCCGCGTTTAGAGGGTCACCTTTACTCCATCGGCCACCAACCTGGCgTCAGGAATCTTCAGCGGTGAAGTTCCTGAACCGGATGATCCGTCTCTTTTCCAAAGGCCCGGTGGAAGCGGTCGATTGCCCAACGGTAGAGGAATCTTCTGACCCGGGCAATAAATGAGTCGGCTTCTATTGGAGTTAAATGTTTGAACATTTTCCAAACTTATTATAGAAGCCTCACATCCACATTTCATTgAGACgAATGCTCTTCCTCCGAAGGCTTTAATCTTCATCCCGGCGAATATCACCGCATTATTTTAAAGTGCCATTTAGTCCAAAAAAGCTACAGtcttgtcgttttctcttcttcttctttttgtgttgttgctcttgttcATAATTGTGTATATGTGTGTTATTACACACACTGCTGCAGCGTTGAGGATTCACCCAGTAATCGCTCAGTTCGGGACCGAGAGGAGAGGACTGACGGCGTACGTTCTCACCCAGGAGGAGATGATCAAGAAACACTTCCCTGTCAagggtgagtctctctctctctctctctctctctctctctctctctcttcatctcattcCACATCTCCTCCTCCTTCTTTAGCTCCTGTTTCTCGTCCCTGTCTCCAGGAATGCtGGGCTTTGAGGACTTCCTGTGCACGGACGCTGTTGACTGCGTgACCGACGGCAGCCCGCTGTACGGACTCGACTGTGAAATGGTGAGCGGAGATCCTCTAtAGATAGATATATATTATTGATGTATAAACTATCTtTAAACAGAAAAAAGGTGATATTTTCAATATAAcGTTGTCCTTTTTTTTtACAATGCTTCTTTAATTTTAAGCATATtTATGTTCCCACGTTTTTTCTGATATCATTTCACCACCTGGAACTTCGATGCACCTCTGTTCCACTTGTcGCGACGTTTTGAAAACAAACTCATGAATTGACTGTGTTTTTCTTTTCTCGTGTCAGAAGAGGGCGACGTGTTGCTCTCACTTTGTGTTCCGAGCTTTTCCAAAATGCTTCGCCGTgTTCGTGTTTCAGTGTCTtACAGGGAAGGGAAACGAGTTGACTCGCCTCTCCCTGGTGGACAGCGACGGcAAGTGTTTGCTGGACGACCTGGTGAGACCTCAGAACCGAATATTCAACtacctcaccaagtaggtcaatgactctacacacacacacacacacatacacacacttgcttctttgaaaaccaccaccaatcactgtgttaacccttgtgttgccttcgggtcaatatgacccgattcaatgtgtaaccctcctgttacctttatatttactaacatattttacccttgaggtcaatatgaccccagctattaaaatctccagaagattattagaattaatattgttttccaagtttaagtgtgaggtactttatgtttgtttgttgactcccgaaagaacaccgacattgaatcgggtcaaattgacccgaaggcgacaggagggttaaatattgaatcgggtcaaaatgacccgaaggcaacacaagggttaaaAAGCTACAACCCATGCTCGTTGCCGGGTGCGTTTCCGATAGGTTCTCGGGGATAACCAGGAAGATGTTGCGACCAATCACGATGACCCTGCGGGACGTTCGACTGAAGCTCGTTAACTTGTTGCCGAGCGAtGCGGTTCTGGTGGGACACTCaCTGGAAtGCGACCTTGTGGCTTTGAAAGTGAGTGAATACGGACGTCTcCATTTCCGCTCGCATCAATGGAAaTATCAGGAcGAAGTTAAAGTTCGGACgttgtttgtgttgtttgcgttgtttgtgttgtttgtgtCGTGAATCTGAGGGCAGTGTTTGTACACGTCTGCAGATAGAAGTGTGTGTTCAGCAAAAAGATGCCTGACTTTCTCATAAATGAGATATATTGTTAGATTAAATGATGTTTTAGCTACAAATTTACATTTTATTTAGTCATTTTTAGGGGGTTTAATACCAAATAAAATGTAAACGGCTAAACTTGAAAAATATCAGGAAtATTTTTCAAGAACAACCCGTCGACCCGTCGTCTTATCGAAGTGGTCACATTATTTTATTTTGGAGAGTCTCTCTGACCCGTGCGGCgTTTGTTTTCCTGCAGCTGATCCACCGGCACGTCATCGACACCGCGCTGCTGTACCGGAAAGAATTTGGACAAAAGTTTAAACTGAAGGTCCTGGCAGAGAGCGTGTTGCAGTAAGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTCTCTCTCTCTCCCACCCAGCAGGGTTTATTTTCCACTTGTGTCCCAGGAAGCTGATACAGACTGAAGAGACGACGGGTCATAATCCCATTGAGGACGCTGCAGCCGCCCTGGAGCTGGCTCAGTATTTTATCAGAACGGGACCTCGTCAGGTAacacacacacacacacacacactcgtacacacagtcacacacacactctcacattctcCATCGATGTCATGTCTTCcGTGTGTGCTCACTCTCAGGTTGTGGAGCTTCATCTGGAGACGCTGTGGGGATCCACGATAGAGGAGGAGCCCTctgaatctgaatttgaacctgaaccagaaccagaaccAAGCCTCAGGTAAAACCCCGTGTGACCGTCTGTAAATCTCTTCCTCACACCTGAACACAGGTACCCCGGCCATGTCCACACTAAGCCGTCTCTATCAGGCGGTCTACCGATCTTTTAAACTCAGCCGGCCCTTTTCCGACACGTTCTACTCGGAACAAAATAAATGGTTCATGATGTTCAACACCCTCTTGAAAAATATGTCAATGAGACTTCTGGGAATAAAATATCGTCAGAGCCGAATCAAAGCGTTAAAATCTCATCAAAAAGTCTGAAGTCACCGCGGCTCACCCGTCTTTATTTCCTGGCGCAGGTTCGCGGACATACTGCAGACTCTGGGCCAATCGGTGGCCTTCTTAGGAAAGCGCTCGGACCTCCCACTGGACCTGTCCAACCAGGAGTGGCACAACTCGGACAAAGAGGTGGGGACACGACCCGTTTGACCCGGGAGACGTCCGACTTCTTACCCGATCACACGCGCTAAAATATGTCGTTTCTTGTCCCAAATTATGAATTTGTTTTTCTTCCATTCGTGGTGCATTCAAGGTCTTATAAAGAGTTTGATGGTTAACCCGTTTGTCAGGCATTAGGATCCATGTCTCCATTTGGTGGTGAATATCTGGTATCTTGTGTTAAATAGGAAAGATGAATGAATTTTCTCTTTTTGTTTTCTTTCTTTCTTCCCCCTCTCACTATCTCCTTACAACTCCCGTGTCTTTCTAACCGACTCCTCTTAATCTTCACCTCCGCTCCTAAATCTCGCCTCCTTCAGGTGGcGGCCTCCTTCAGGAGACAGAAAAAGTGTCCGTTCCTCTCAGTGCTCCAGTTTTCTTCCCTCTCGGACCATCTGAGGAGGTGCCCCCCCCCTCCACGGGAGCACCAGAGGGTGAGGCGCTCCGTTCACGGCGCGACGTGTTTTCACTCGTGGGTTTTCCAACGCGCCGCTGAACGCGTCCCTCCGTCCGTCCTGCAGGCGATCCTTCGGGACATGTGCGTCGTGTTCGCCGGGCCGTTCCCTGCTGGTTTCTCCGAGAGGAAAGTGAGGCGTCTGTTTTGCTGCTGCGGACCGGTTCGCAATATCAAAATGTTGACCACAACCGTCAGGGTACATCTCCGACAATTACCATCCTTTCTAATCTCAGATTAATACATTTTCATTTaTTAATCGTACCGACCGATATATCCTGACTACATTTGGTCTCCAGGTCCATGCAGAGGTGGAGTTTGAGCTGCTGGAGGGAGCGACGCTGGCTCTAGAGGCGTTGAATGGACTTAATATGCACGGGCAGTCCATCAAGGTAACtcctcccccttttgctctttttcttcctgccacttattcctcttccAGCTGAAGCGAATCCAGAGAAACGTCCTTTTCCAGGTGCAGAGGCCCGTTCACGAGTCGATGCTGGACCTGGATCTGACTCTCGGCGCTTTGATGGCCGACGGTCTCAACGCCCGCCGCCTCTACGTCAAGTTCAGCCCCGGTTTGGCGGAAGGCGCCCGCCGCGGTTTGGCGCTGGCCAACGGGCACGtGGCGGACGGcAGCGGCGCGCCGCAACTGACCGAGCGGGCCGTCAGAGACGCGTTCGGTCACTTTGGTCCGGTGGAGCGAGTCGTCCTGCCCGCCACGCGGGGGAAACGCGCGAGACACGCGTACATACGTGAGTAACAAAAAGCGCCGCCGCTCGCCGCAACTGTTCGAGCGCGGCGAGCGGCGCGTCTCCCTAACGCGAcGCGTCTCCGGGGCGACAGAGTTCGAGAGGTCGGCGGCTCGACGCGCGGCCCTCGACGCCTCGGGACGGAGGGAAGACTACCTCGTCTGTCCGTCCCTAACTCCGGCGCACTTGACCTCGTGGGATGCCGGCGGCGGCGAGGAGAGGACCCACGCCGCGCACACCGGCTCTCAGGTGAAGACGAGGGGCGCGCCGACTCCGGCTGGTCGTCACACCGAGAAGAACATGTTTTGGCGAGCGCGCCAGTTTCTCGGCTTCCGTGAGAGAAAACTGAGCTTTTTAATATTTATTTATCTCTTGATGAAATACTTTGTCTGAAAGTCTTTTTTTGGCTAAATGTGAAAGATTCGAAAGTATTTAGTGCCTTCCTGATTTGAGCTTTCAGACCTGGATGGATTGAGCGCATGGCAATGAAGACTGAAGTTATGTCATCCATGTAGGACCAGGAAATGGATCTCATGCTGAGGAGGTTGGACCGCCGCCTGGGGAAGCTCTTCAGATTCCTCCCAGAAGGCACCTTGTCCGTGGTCGTGCTGCTCGGACACGCAAGGTGACGACGGGAGAAAGGAAAAAGAAATCGCAGACCCACGTTTGAGTATTTCTAAAAACGTCCTCTTCTCTTCCTTTAGTGCCGATGACCGACTTCCTGGTTTGTGCCTCGTGGAGGTCAAGCGAGGGATGTCTGATGATCTTTCATCAGCGTCAGAAACGTGCAATGGGAGGAAAAGAAAGCGCGGCGCCCCCTCGCCGCACAGGGAGGCCGGGAGATCGAAAGCAGCGGAGGAAGGCGAGGAAGACGAGGAGACGCCGACGCGCGGACACTCGcCGAGTGTTTCTGTGCTGCCCGACCGCCTTCAACAACCCATTACACCCAGTGAGCTGACGGAGCTGCTGCACTACGCCGCGCTGGGCCAAACGGGTGGCGTCAAACAGCCCAGctggtgttgcctccagcatcagaagagggttaaagctgtgaacGTGGTGCTCGTGGAGGGGCTGACCCAGAGTCACTTCTACCAACACTTCCTCGCCCTGCGGCACCTCCGCACCAGCTACTCCACCAGGGTCACCTTTACTCCATCGGCCACCAACCTGGCgTCAGGAATCTTCAGCGGTGAAGTTCCTGAACCGGATGATCCGTCTCTTTTCCAAAGGCCCGGTGGAAGCGGTCGATTGCCCAACGCGTTGAGGATTCACCCAGTAATCGCTCAGTTCGGGACCGAGAGGAGAGGACTGACGGCGTACGTTCTCACCCAGGAGGAGATGATCAAGAAACACTTCCCTGTCAaggGAATGCtGGGCTTTGAGGACTTCCTGTGCACGGACGCTGTTGACTGCGTgACCGACGGCAGCCCGCTGTACGGACTCGACTGTGAAATGTGTCTtACAGGGAAGGGAAACGAGTTGACTCGCCTCTCCCTGGTGGACAGCGACGGcAAGTGTTTGCTGGACGACCTGGTGAGACCTCAGAACCGAATATTCAACtacctcaccaaGTTCTCGGGGATAACCAGGAAGATGTTGCGACCAATCACGATGACCCTGCGGGACGTTCGACTGAAGCTCGTTAACTTGTTGCCGAGCGAtGCGGTTCTGGTGGGACACTCaCTGGAAtGCGACCTTGTGGCTTTGAAACTGATCCACCGGCACGTCATCGACACCGCGCTGCTGTACCGGAAAGAATTTGGACAAAAGTTTAAACTGAAGGTCCTGGCAGAGAGCGTGTTGCAGAAGCTGATACAGACTGAAGAGACGACGGGTCATAATCCCATTGAGGACGCTGCAGCCGCCCTGGAGCTGGCTCAGTATTTTATCAGAACGGGACCTCGTCAGGTTGTGGAGCTTCATCTGGAGACGCTGTGGGGATCCACGATAGAGGAGGAGCCCTctgaatctgaatttgaacctgaaccagaaccagaaccAAGCCTCAGGTTCGCGGACATACTGCAGACTCTGGGCCAATCGGTGGCCTTCTTAGGAAAGCGCTCGGACCTCCCACTGGACCTGTCCAACCAGGAGTGGCACAACTCGGACAAAGAGGTGGcGGCCTCCTTCAGGAGACAGAAAAAGTGTCCGTTCCTCTCAGTGCTCCAGTTTTCTTCCCTCTCGGACCATCTGAGGAGGTGCCCCCCCCCTCCACGGGAGCACCAGAGGGCGATCCTTCGGGACATGTGCGTCGTGTTCGCCGGGCCGTTCCCTGCTGGTTTCTCCGAGAGGAAAGTGAGGCGTCTGTTTTGCTGCTGCGGACCGGTTCGCAATATCAAAATGTTGACCACAACCGTCAGGGTCCATGCAGAGGTGGAGTTTGAGCTGCTGGAGGGAGCGACGCTGGCTCTAGAGGCGTTGAATGGACTTAATATGCACGGGCAGTCCATCAAGGTGCAGAGGCCCGTTCACGAGTCGATGCTGGACCTGGATCTGACTCTCGGCGCTTTGATGGCCGACGGTCTCAACGCCCGCCGCCTCTACGTCAAGTTCAGCCCCGGTTTGGCGGAAGGCGCCCGCCGCGGTTTGGCGCTGGCCAACGGGCACGtGGCGGACGGcAGCGGCGCGCCGCAACTGACCGAGCGGGCCGTCAGAGACGCGTTCGGTCACTTTGGTCCGGTGGAGCGAGTCGTCCTGCCCGCCACGCGGGGGAAACGCGCGAGACACGCGTACATACAGTTCGAGAGGTCGGCGGCTCGACGCGCGGCCCTCGACGCCTCGGGACGGAGGGAAGACTACCTCGTCTGTCCGTCCCTAACTCCGGCGCACTTGACCTCGTGGGATGCCGGCGGCGGCGAGGAGAGGACCCACGCCGCGCACACCGGCTCTCAGGACCAGGAAATGGATCTCATGCTGAGGAGGTTGGACCGCCGCCTGGGGAAGCTCTTCAGATTCCTCCCAGAAGGCACCTTGTCCGTGGTCGTGCTGCTCGGACACGCAAGTGCCGATGACCGACTTCCTGGTTTGTGCCTCGTGGAGGTCAAGCGAGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR034922	Domain	RNA exonuclease 1-like, exonuclease domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR047021	Family	RNA exonuclease REXO1/REXO3/REXO4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004527	Molecular Function	exonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-