Gene detail

Detailed information of HS21126 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21126	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED	chr24	3704112	3709571	+

Gene Structure

More details in Jbrowse Sequence

CDS

HS21126

ATGCAAGACACGGTGAACATGATGGACGACACCGAGTACGACGAGGAGGAGCCGTCCTTCAGCGACCCGGAGGACTTCGAGGATGACGTCGAAGACGAGGAGCTCTTGGAAGACATCCTGAAGGAGAAGCCCCAAGAGGCTGACGGGATTGACTCGGTGGTGGTGGTGGACAACGTTCCTCAGGTGGGCCAGGAGCGCTTGGAGAAACTCAAGAACGTCATCCACAAGATTTTCTCCAAGTTTGGCAAGATCACCACTGAGTTCTACCCAGAGACCGATGGCTTGACCGAAGGGTTTATCTTCTTGGAGTACGGTGGTCCTTCCCAGGCCCTGGAAGCGGTAAAGAACGCAGATGGCTACAAACTCGACAAACAACATACGTTCAGAGTCAACCTCTTCACCGACTTTGACAAGTACATGAACATCAGTGATGAGTGGGAAACGCCCGAGAAGCAGCCTTTTAAAGATTTTGGAAATATGCGCCACTGGATTGAGGACCCAGACTGTCGTGACCAGTACAGCGTGATCTACGAAGCCGGAGAGAGGACCGTCATTTACAACAACGACGCTAAGGAACCCATCGTGTCCGAGGAGAGATCGACGCAGCGCTGGACGGAGACGTACGTgCGCTGGTCTCCCAAAGGCACCTACCTGGCCACCTTCCACCAACGTGGCATTGCATTGTGGGGCGGCGAGAAGTTCAAGCAGATCCAGAGGTTCAGCCATCAGGGCGTGTCCCTCATCGACTTCTCATCATGTGAGAGGTATGTGGTGACCTTCAGTCCCCTGATGGACACGAAGGAGGACCCACAGGCCATCATCATCTGGGACATTCTGACCGGACACAAGAGGAGAGGTTTCCACTGCGAGAGCTCTGCACACTGGCCCATATTCAAATGGAGCCACGACGGAAAGTTCTTTGCCAGGATGACCGCAGACACGCTGAGCATCTACGAGGCTCCATCAATGGGCTTGCTCGACAAGAAGAGTCTCAAGATTTCCGGCATCAAGGACTTCTCATGGTCTCCTGGTGACAACGTCATAACGTTCTGGGTACCCGAGGACAAAGATATCCCAGCGAGAGTGACTCTGATGCAGATTCCCACCCGCCAGGAGATCCGCGTCCGCAACCTCTTCAATGTTGTCGACTGCAAACTGCACTGGCAGAGAAACGGAGACTACCTGTGTGTGAAAGTGGACAGGACTCCGAAAGGAACCCCGGGCGTTGTCACCAACTTTGAAATCTTCCGCATGAGAGAGAAGCAGGTTCCTGTCGACGTGGTGGAGATGAAGGAAGGCATCATCGCGTTCGCTTGGGAACCCAACGGCAGCAAGTTTGCCGTTCTCCACGGAGAGTCTCCGAGAATCAACGTCTCCTTCTATCACGTCAAAAACAACGGCAAGATTGAGCTCTCAAAGACGTTTGACAAGCAGCAGGCCAACAGCATCTTCTGGAGCCCCCAGGGACAGTTCCTGGTGCTGGCTGGTCTCAGGAGTATGAATGGAGCTCTTGCCTTTGTGGACACGTCCGACTGCACCATGATGAACATAGCCGAGCACTACATGGCCTCCGATGTCGAGTGGGACCCCACCGGCCGCTATCTCGTCACCTCCGTCTCCTGGTGGAGCCACAAGGTGGACAATGCATACTGGCTGTGGACGTTCCAGGGCCGTCTTCTCCAGAAGAACAACAAGGACCGCTTCTGTCAGCTGCTCTGGAGACCCAGACCTCCGACCCTGCTCAACATAGAAGAGACCAAGATAATCAAGAAGGATCTGAAGAAATACTCAAAGATCTTTGAGCAGAAGGATCGTCTGAGCCAGACCAAGGCTTCTAAGGAGCTGGTGGACAAGCGGCGGTCCATGATGGATGATTACCGTAGCTTCAGGGAGGCGGCGCAGCAGACCTATCGGGATCAGAAGAGCGCCCGCCTCGAGCTCAGAGGAGGTGAGACGTCGCTCGCGCTTCGTACCCGCCGGTCTTTGTCCGTACGTAAGGAAACCACTGACATGCGTGTCTGTCCTCCTCCAGGAATGGACAGTGATGAGCTGGACAGCAACGTGGAAGACTGGGAGGAGGAGACCATTGAGTTTTTTATCAACGAAGAAATCATTCCCCTTGGAGATCTG

Transcript

HS21126

ATGCAAGACACGGTGAACATGATGGACGACACCGAGTACGACGAGGAGGAGCCGTCCTTCAGCGACCCGGAGGACTTCGAGGATGACGTCGAAGACGAGGGTGAGCGGcCGCAGGAAACACCCCGGCTTTCTAGGCCCGGTGCTAACTTGTCAGCTAACGCGCCGCTCTTACTGAATTATTTTTTTAAACGCCATAAATCCAGTGAACCTGTCACCTTGGCAACCGGGCCGTAATGTTTAAACCGTGAGATGATATTAACAAAAAGTTAACTAATGACGTTACATCGCCATTTTCCTTAACTGTTAACCGTTAAAGTCTCTGCTTCGTCTAACGGCCGTTGGAGCCTCGGTGTGACCCCaCCAGACTCCTAACTGTGGCCTTGTCGCTGTCATGGTGACAATAAAAACGGCTGACTAACGGAAACTCTTTTTTATAATAGATGGCTGGTTGAATGTTTAAGGCCAAGACTACTACCGCGAGCCTCCGGTCGTGTGTGAAGCTGCCGGTAAACGAGGCGTTCACGTCAGATAAACGTGTATTTTGGCTGCTCGGTTCTCCTCGTGTCTGCGAACACAAACGTGAACAAATGACACATCAGCAAGTCGAGTGCTACACAATGAAGACTAAAGCAAATGCCCTGCAGTAAAAATATTTACATGTGAAGTATAACGTTTAATTTCCATTCACACGGTTTAGAGAGGGGCTGGTTTCACTTTGTCTTGACGTGCATTGTGGTGCTGTAGAATTGTAATTGTTAGTAGGTTAGCTTTTAGAGTAGTGTCATTTTGGGGAAGTTACACCTTAAAAACATCTGATTGAGCCACAAAGCCCCGAATATAACAGTACATTTGGATTAACACCTCTCTGAAACATATcaggcttcctacggtcatggaaaaccgggaaaagtcatggcatttaaaatttttatttccaggcttggaaaagtctttgataaaaattcaatcccaaaggttttggaaaagtcatggaaatgtgttatattcatatgttcatttacacagtttgattaaaagaatacacatttatttatatatttatgtgtgtatatatatatatatattcttttaagcaaactattgtctctttcatgtgtacactgagatttcacatcatgtttggtcgtggaaattagttttgaagttcatggaaaagtcatggaaatccataggtcaacatgtgtatgaaccctgTCATATGCATTAGTTTAAGACAGAGGTACTTATTTACTTTACAAAAGTTAGATCATTTATTTACTTTTTTCATAGTGTACCACCCTTTAAATGCTGATTGGGGCTATATGTGTATGTGACTAGGTGGTGAACTAGTTACGGTTTATATTATATCCGTTAAATCCCACGATCCAATTTCACTGTAGAACCTTTTGGCTTGAAATTGTATTTGTAAGCCAAAGTTAACGCCGATCAGATAAGTGACTAATGACAATGTTGCCCTCCTTCAATCGCCCCGCCCCTCTTCAGAGCTCTTGGAAGACATCCTGAAGGAGAAGCCCCAAGAGGCTGACGGGATTGACTCGGTGGTGGTGGTGGACAACGTTCCTCAGGTGGGCCAGGAGCGCTTGGAGAAACTCAAGAACGTCATCCACAAGATTTTCTCCAAGTTTGGCAAGATCACCACTGAGTTCTACCCAGAGACCGATGGCTTGACCGAAGGGTATGTGGTCGGCTCCATGCGCCGTTATGGATGTGCCCTTGCTTTAATGCGGAAAATAAGGTGTAAAACAAACTTATGCAGGTTTATCTTCTTGGAGTACGGTGGTCCTTCCCAGGCCCTGGAAGCGGTAAAGAACGCAGATGGCTACAAACTCGACAAACAACATACGTTCAGAGTCAACCTCTTCACCGACTTTGACAAGTGAGTGTGCGGCGTCGGAGAAGAGATGCATCAAATGATGCGGCAGATTTATGCGAGACAAGTAGATTCATTCTTCTCGCTTATTTCCCAGGTACATGAACATCAGTGATGAGTGGGAAACGCCCGAGAAGCAGCCTTTTAAAGATTTTGTGAGTTATTTTCTTACTAATCATAAGTAGTTTATTATGTGGGCTTTTTGTATTTCTTTACATTTAGAAGAAATGGGCCACTCAATATCGATTAATGGATATCCCGCCTATTCAGGGAAATATGCGCCACTGGATTGAGGACCCAGACTGTCGTGACCAGTACAGCGTGATCTACGAAGCCGGAGAGAGGACCGTCATTTACAACAACGACGCTAAGGAACCCATCGTGTCCGAGGAGAGATCGGTACGTAGTCGGTCACACTCTGACCTGCAGCGTTAGTCGAGGTTGTGATGAATTTTAATCCACGGTGCTGTTTGACTTGCGGACTGATGATGTTTTTGTTTTCCTGACGCAGCGCTGGACGGAGACGTACGTgCGCTGGTCTCCCAAAGGCACCTACCTGGCCACCTTCCACCAACGTGGCATTGCATTGTGGGGCGGCGAGAAGTTCAAGCAGATCCAGAGGTTCAGCCATCAGGGCGTGTCCCTCATCGACTTCTCATCATGTGAGAGGTAAGCAACATTGTTCTTATTTACACTGTTTTAGGATTAGGGTTCAAGTGTTAATGATGTAAACTGATGCCCTTTTAAAAAATATATATATTTGGCATCTCCCAAAAAGTGTTTGGGCCCAAATCTAATTATTCTGCTCAATATTCTTCTCTACCAAACTGTTGATGAAATATATATCTTGACACATTGAAAGCTATAGGAAAGAAAATATGCTTCACTACTTAATCCAAATACTGTGCGTCCTGATTTGAAATCTATGAAACTTATCAGCTTAGTTTGTTAATAATGAACGATGGAAAACAAAAAGTGACTCATCTTGAGCTCCACCTGTGGTTGTGCCGCCTTCCAGGTATGTGGTGACCTTCAGTCCCCTGATGGACACGAAGGAGGACCCACAGGCCATCATCATCTGGGACATTCTGACCGGACACAAGAGGAGAGGTTTCCACTGCGAGAGCTCTGCACACTGGCCCATATTCAAGTCAGTATTTTGGGTTATGAAAGATTTTATGTCCCCAATTGACTTCTATGCTGCGTTCACATCTGTAGCTCCTGCAGTGATCAGAATGAATTATAATGATGTGCATTGTTTCCCAGATGGAGCCACGACGGAAAGTTCTTTGCCAGGATGACCGCAGACACGCTGAGCATCTACGAGGCTCCAGTGAGTACAGACAAAGACGCCGTGAAGTTGTATTTGTTGAGTGTGCAGCTGACATTCTTTCTTTCCCTTTTCTTTAGTCAATGGGCTTGCTCGACAAGAAGAGTCTCAAGATTTCCGGCATCAAGTAAGAGAGGATTCTTTTATGATTTTGTTTCTTGTAGTTGCTTATTAAATTGTGAAACATTGAGAATAATCTGTGCCCTATTTTTGTGTTTACCTACAGGGACTTCTCATGGTCTCCTGGTGACAACGTCATAACGTTCTGGGTACCCGAGGACAAAGATATCCCAGCGAGAGTGACTCTGATGCAGATTCCCACCCGCCAGGAGATCCGCGTCCGCAACCTCTTCAATGTTGTCGACTGCAAACTGCACTGGCAGAGAAACGGAGACTACCTGTGTGTGAAAGTGGACAGGACTCCGAAAGGAACCCCGGTAAAGAGAGAGAGGAGAAACGGCTGAGACCTCACTGTGAAAAAAAACAACTTTAAAAACAATTGCGCAACTTATTTTTTCCCCCTCCCTTTTCAGGGCGTTGTCACCAACTTTGAAATCTTCCGCATGAGAGAGAAGCAGGTTCCTGTCGACGTGGTGGAGATGAAGGGTGAGAACGTAACAAAATACAAACGCTCTTCGCGGGACTTTGAACGTTTCCCAAAATAAACGACGACCCTGACGCACGTCTCTTGTTTTTCCGTCTTTGCAGAAGGCATCATCGCGTTCGCTTGGGAACCCAACGGCAGCAAGTTTGCCGTTCTCCACGGAGAGTCTCCGAGAATCAACGTCTCCTTCTATCACGTCAAAAACAACGGCAAGATTGAGCTCTCAAGTGAGTTGATCGGACTGACGCAAAAATAACTCTTGAGTCGCGCGGTAAACCTCCACTGAATGAGACGCTTCATCCTCTTTTTCTTTTCTTCTTCAGAGACGTTTGACAAGCAGCAGGCCAACAGCATCTTCTGGAGCCCCCAGGGACAGTTCCTGGTGCTGGCTGGTCTCAGGAGGTTAGTTAAATCTCTGTGAATTAGTTAGTGATGATGACCAAACTAAATACCTGGTTATCTCGTATGAGAGCTAAGCTTCCCTGATTTGAGGTTTACAGTATACATTTTTTGTCGGTGTAAGTGTATAATCTTCTCTTTTTTTCCTCCATGTGTGTCCAGTATGAATGGAGCTCTTGCCTTTGTGGACACGTCCGACTGCACCATGATGAACATAGCCGAGCACTACATGGCCTCCGATGTCGAGTGGGACCCCACCGGCCGCTATCTCGTCACCTCCGTCTCCTGGTGGAGCCACAAGGTGCTGCCACGCCTTTCCCACCGGGCCAAATCACCGTCCGCTGGCATCCTAACGACATACTAAACTTCATcCTTTTCCTTTTATTCTTTAATGTGCATTAAAGGTGGACAATGCATACTGGCTGTGGACGTTCCAGGGCCGTCTTCTCCAGAAGAACAACAAGGACCGCTTCTGTCAGCTGCTCTGGAGACCCAGACCTCCGACCCTGCTCAACATAGAAGAGACCAAGGTACCATTTCATCTTCATCATGTACAGTACCTATGCtgtatctttgtgtgtgtgtgtgtgtgGAGCCAGTGATGACAAATCAACATTTCTGACACCTCGTATGAGAGCTGCACTGCGGCTCCTGATTCTAACTCTGGTCTGAGGCTCACGTCTCCCAACACCGACGTGATATTGTGTTTGCCGTGTCTTTTGATTTGTCCTTTTTTCTGTTTTACACTAAATGTCCATCTTCCTCCTGCAGATAATCAAGAAGGATCTGAAGAAATACTCAAAGATCTTTGAGCAGAAGGATCGTCTGAGCCAGACCAAGGCTTCTAAGGTTCGACGCGTTTATGCCTTTATGCTTGTTTACGACCCTTGTCCTTTTGCACCGTGTTTGTTTATGGCGCTAAATGTTTTATGTGTTTGTGAGTAGGAGCTGGTGGACAAGCGGCGGTCCATGATGGATGATTACCGTAGCTTCAGGGAGGCGGCGCAGCAGACCTATCGGGATCAGAAGAGCGCCCGCCTCGAGCTCAGAGGAGGTGAGACGTCGCTCGCGCTTCGTACCCGCCGGTCTTTGTCCGTACGTAAGGAAACCACTGACATGCGTGTCTGTCCTCCTCCAGGAATGGACAGTGATGAGCTGGACAGCAACGTGGAAGACTGGGAGGAGGAGACCATTGAGTTTTTTATCAACGAAGAAATCATTCCCCTTGGAGATCTGATGCAAGACACGGTGAACATGATGGACGACACCGAGTACGACGAGGAGGAGCCGTCCTTCAGCGACCCGGAGGACTTCGAGGATGACGTCGAAGACGAGGAGCTCTTGGAAGACATCCTGAAGGAGAAGCCCCAAGAGGCTGACGGGATTGACTCGGTGGTGGTGGTGGACAACGTTCCTCAGGTGGGCCAGGAGCGCTTGGAGAAACTCAAGAACGTCATCCACAAGATTTTCTCCAAGTTTGGCAAGATCACCACTGAGTTCTACCCAGAGACCGATGGCTTGACCGAAGGGTTTATCTTCTTGGAGTACGGTGGTCCTTCCCAGGCCCTGGAAGCGGTAAAGAACGCAGATGGCTACAAACTCGACAAACAACATACGTTCAGAGTCAACCTCTTCACCGACTTTGACAAGTACATGAACATCAGTGATGAGTGGGAAACGCCCGAGAAGCAGCCTTTTAAAGATTTTGGAAATATGCGCCACTGGATTGAGGACCCAGACTGTCGTGACCAGTACAGCGTGATCTACGAAGCCGGAGAGAGGACCGTCATTTACAACAACGACGCTAAGGAACCCATCGTGTCCGAGGAGAGATCGACGCAGCGCTGGACGGAGACGTACGTgCGCTGGTCTCCCAAAGGCACCTACCTGGCCACCTTCCACCAACGTGGCATTGCATTGTGGGGCGGCGAGAAGTTCAAGCAGATCCAGAGGTTCAGCCATCAGGGCGTGTCCCTCATCGACTTCTCATCATGTGAGAGGTATGTGGTGACCTTCAGTCCCCTGATGGACACGAAGGAGGACCCACAGGCCATCATCATCTGGGACATTCTGACCGGACACAAGAGGAGAGGTTTCCACTGCGAGAGCTCTGCACACTGGCCCATATTCAAATGGAGCCACGACGGAAAGTTCTTTGCCAGGATGACCGCAGACACGCTGAGCATCTACGAGGCTCCATCAATGGGCTTGCTCGACAAGAAGAGTCTCAAGATTTCCGGCATCAAGGACTTCTCATGGTCTCCTGGTGACAACGTCATAACGTTCTGGGTACCCGAGGACAAAGATATCCCAGCGAGAGTGACTCTGATGCAGATTCCCACCCGCCAGGAGATCCGCGTCCGCAACCTCTTCAATGTTGTCGACTGCAAACTGCACTGGCAGAGAAACGGAGACTACCTGTGTGTGAAAGTGGACAGGACTCCGAAAGGAACCCCGGGCGTTGTCACCAACTTTGAAATCTTCCGCATGAGAGAGAAGCAGGTTCCTGTCGACGTGGTGGAGATGAAGGAAGGCATCATCGCGTTCGCTTGGGAACCCAACGGCAGCAAGTTTGCCGTTCTCCACGGAGAGTCTCCGAGAATCAACGTCTCCTTCTATCACGTCAAAAACAACGGCAAGATTGAGCTCTCAAAGACGTTTGACAAGCAGCAGGCCAACAGCATCTTCTGGAGCCCCCAGGGACAGTTCCTGGTGCTGGCTGGTCTCAGGAGTATGAATGGAGCTCTTGCCTTTGTGGACACGTCCGACTGCACCATGATGAACATAGCCGAGCACTACATGGCCTCCGATGTCGAGTGGGACCCCACCGGCCGCTATCTCGTCACCTCCGTCTCCTGGTGGAGCCACAAGGTGGACAATGCATACTGGCTGTGGACGTTCCAGGGCCGTCTTCTCCAGAAGAACAACAAGGACCGCTTCTGTCAGCTGCTCTGGAGACCCAGACCTCCGACCCTGCTCAACATAGAAGAGACCAAGATAATCAAGAAGGATCTGAAGAAATACTCAAAGATCTTTGAGCAGAAGGATCGTCTGAGCCAGACCAAGGCTTCTAAGGAGCTGGTGGACAAGCGGCGGTCCATGATGGATGATTACCGTAGCTTCAGGGAGGCGGCGCAGCAGACCTATCGGGATCAGAAGAGCGCCCGCCTCGAGCTCAGAGGAGGTGAGACGTCGCTCGCGCTTCGTACCCGCCGGTCTTTGTCCGTACGTAAGGAAACCACTGACATGCGTGTCTGTCCTCCTCCAGGAATGGACAGTGATGAGCTGGACAGCAACGTGGAAGACTGGGAGGAGGAGACCATTGAGTTTTTTATCAACGAAGAAATCATTCCCCTTGGAGATCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08662	eIF2A	Eukaryotic translation initiation factor eIF2A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR011400	Family	Eukaryotic translation initiation factor 3 subunit B	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013979	Domain	Translation initiation factor, beta propellor-like domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR034363	Domain	eIF3B, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14068	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-