Gene detail

Detailed information of HS21082 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21082	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	chr24	2656005	2659546	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21082

CTGCATGTTTCCGGTTCTACAAGAGAAGTGTGGAGAGAGAGCGGTGAGTTTAATATTTATTACAGTTTTGTCTTTATGTAATCCGTTTATAGTTTCACCGATTCCCCAGAACAATATATATATCGTTCCGGAGTTTGTGTATATGATATGTTATTTGTATTTCACCTCCTTAAAAACACAAACGCGCAGTTTTCCAGTTCAGCCCGGCTTCATTGTGAATGAACGTTGAGCTAACGTATGCTAATATGTACCTAAACTGAGtGtTTAGCCCAATTAAAACATAAACAACACGTCCGGTGGGAAATGATGGCTTCATATTTGAGGGATATTTCCAGACAGAATCTATTTGTGCGATAACTTTTTAGGTTGTTTCTCTCTCTGGACTCTAATACCTCAATAGTGTTTCACAGTTGAGATGGATGGATACTTTATTATTTTATTAATTGTTTTTTTTTTTACACTAGCATTTATACATACACGTAAAACAATTTTAAATAATAAAAATGCACAATATATATAATAGAATGATATTTAATTAACTAATCAAACAATAGTGcacagctgtaagatgtctaaaagaactactatatatatatttataaattgtcttgcatgcttttaggtttttgtaatctatattttgtgtgaagggaacaaaacaatgttcaacggttcaattgaaagagataaatgtccctcagagcaacagttgagcaagaaaagaagaaatcactcaggaagcttcacatcgaaatgtgtgcagatcttaaatatcaacagcttcctgtttgggggtcaagttcacaataatgcagccaatcaaaaggcttgaattaacaggcgcgttaaACACTACTATAGAAATATAAGTTAGTTTTAAGTTGGCGTtACAGGAATGCAGAGGCCCAAAAAAAACTAACTCAATATTTAGAGcCGTTTAATACGATTGTGTTTcAATAAtGATTGACGGTCACTTGCGCTTTTCacaaagaaaactaactaaatggaggttttaatcatttaattcttcttttagatccaaaactatattttaaaaatgtaaatataacatttatacagttttatctcgatttaaagtaattgaaggaaagaagaaaacatttatattcggtctggttccaaacttttTtATTTTAACTGTTGTGAAtCTAAAAAAAAGAaGTTTTTTCAGCCAGTGAAGACGGTAAcTTTCTCTCTGGTTGTTTCCGTCAGACGCCGTCATGGACATCCGACCAAACCACACCATTTACATCAACAATGTAAATGACAAAGTAAAGAAAGAAGGTACGTGTgTgCTTCTTCTTCTCTCTCTATGGCCTGACGAGTACGTTTTAAGATGAGCAAATCCTTTCCTCTCCCGTTGTGTTGAGATGAAGCTAGACGTCAAGCAGACTCTTGTTTCCAGGCGACGACATTCTGCTTCCCTGTGTTTTCCTCTCAGAGATGAAGCGCTCGCTGTACGCGCTCTTCTCTCAGTTCGGCCAGGTCGTCGACATCGTGGCCTCCAAGACGATGAAGATGAGGGGCCAGGCCTTCGTCGTCTTCAAGGAGCTCGCCGCGTCCACCAACGCCCTGCGGCAGCTCCaGGgCTTCCCCTTCTACAACAAGCCCATGGTAGGAATCTTCCGGACTGGCTGTGACGGGCGCTTCTTTTTTGgGGgGGCGGGGCTTCAACTGACCCGTGTTCTGTCGTTCCCCAGAGGATACAGTACGCTAAGACGGACTCCGAGGTCATCGCcaaggtgaagggcacgtacagcgacaaggacaagaagaaggacaagaagaagaagGCTCTGGAGCCGGTGGCGACCAGCCTGCTGAAGAAACCGCCGGCGGTGAGCGGCGAGTTGAGTTTTACACTTTAAATGATCACGACAGCTTTTTAACTCTTAATTACGGTCCTCGTCTACAAATCGACACTGTGGATAATTTATCAAAGCAAGATCTACGATTTTTATTCCATGAATTTCTTTTGATGCATCGCCTGGAGAAATATGATCATGTATTGGCCCGTTGGATAAGAATCTGTCTGCGGTTACACATCTGAGGACAGAATGTTTTAGGTCCTCTTTTTTTTGTTGCGTCATCTCCATCGCATTCTGTGGTTTGACCACCAGAgGGCGCCAACAACACGTTTATGAAACgGCTgGAAGAGATATTCCCAAAACCTTTTTCTTTCTAATGATTTTTCATCTTTATTGGCGCGTGATTGTAAATATGTCGGTAAGTAGAAGCAGGAAGGAGGAAGTAGCTCCGCGGAGCCGCCTGGTTAACACCAGAGAACCGTCAATctgcccttcatcagggcacacacacacacacacacacacacacacacacacactcactctgtgcctctaacaggaaaTGGTGTGGTGATGGAGCTGTGCACCGATGCTGCTTCATGATCATGTCTGATGAGAATAACTGAGGCTGTTTTAAAAATGACTTcTGTACTTTATTAGAATTTTTTTTTTTCTTCTCCTTCAGTGAATACTTTATTTAACTTTCATTTTTGAAACCCAGGATTTAATCTGTTTTTCTTCTAGTTTTATATTTTAAAACTATTTGAAAAATGTTTTACCGGCGTCATAAAAGTGTACAATTTTAAGAAACTTACAGGCACAAAAAAAGTGTGTTGTCCAACTCCCGACAGACGCGGTCGTTGTCACTGAATTTAATAATGAGATCAAATTGTTTCGTTAAAATGTTTTCAAAAAATAATTCCACCAATTAAAAAATAAAAGATAATCTTAGACATAAAATAGTGCACAAGATCAATTATACGGGTTAAAAATAACTTATCAAATAATACATCTTTGTGTTCAAAATTCAACATTAAACCATTATTCAAAGTATTCtGGgATGTGCTTTAACATTTTAGTTTATCAACATGTTTTTGGTCTTCGTGTTGTTAACTGTCGTTATTTGTGTTTCCTGTTTGCAGGGATCGGCAGAAGCACCTGTGAACTCAGGCGCAGTCCAGGTGAGATCGGAGGCGGGGCtTATTTCTGTACAGTTAAAGGGCCAGTAGCGTTGCAGTGATTACGGTTACTGTCGTCTCagaaaagggtgaaggggcgttccgtcggatgcaatctgaaacctcaccactagatggcaccaaatccgccacactgcctttttaaAtaAACAAATAGCTCAAGAAAGTTTTCTTCTCTGCTTTCTCCTCAGGTGCTGGACAACCCGCCAAACTACATCCTGTTCCTCAACAACCTTCCTGAAGAGACCAAcGAGATGATGCTCTCCATGCTGTTCAACCAGTGAGTCCCGTCACGACTTCTTTTAATATTATTTTTTCATAAACACCTGATCGAGCTTCTTTTAAAATCCTCTTCAGGTTTCCTGGTTTCAAAGAGGTGCGGCTCGTCCCGGGGAAGCACGACATCTCCTTCGTGGAGTTTGAGGGCGAGACGCAGGCGGGCGTGGCTAAAGACGCGCTGCAGGGCTTCAGGATCACGGCCACCTGCGCCATGAAGATCACGTACGCCAAGAAGCTGCATGTTTCCGGTTCTACAAGAGAAGTGTGGAGAGAGAGCGACGCCGTCATGGACATCCGACCAAACCACACCATTTACATCAACAATGTAAATGACAAAGTAAAGAAAGAAGAGATGAAGCGCTCGCTGTACGCGCTCTTCTCTCAGTTCGGCCAGGTCGTCGACATCGTGGCCTCCAAGACGATGAAGATGAGGGGCCAGGCCTTCGTCGTCTTCAAGGAGCTCGCCGCGTCCACCAACGCCCTGCGGCAGCTCCaGGgCTTCCCCTTCTACAACAAGCCCATGAGGATACAGTACGCTAAGACGGACTCCGAGGTCATCGCcaaggtgaagggcacgtacagcgacaaggacaagaagaaggacaagaagaagaagGCTCTGGAGCCGGTGGCGACCAGCCTGCTGAAGAAACCGCCGGCGGTGAGCGGCGAGGGATCGGCAGAAGCACCTGTGAACTCAGGCGCAGTCCAGGTGCTGGACAACCCGCCAAACTACATCCTGTTCCTCAACAACCTTCCTGAAGAGACCAAcGAGATGATGCTCTCCATGCTGTTCAACCAGTTTCCTGGTTTCAAAGAGGTGCGGCTCGTCCCGGGGAAGCACGACATCTCCTTCGTGGAGTTTGAGGGCGAGACGCAGGCGGGCGTGGCTAAAGACGCGCTGCAGGGCTTCAGGATCACGGCCACCTGCGCCATGAAGATCACGTACGCCAAGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034562	Domain	U2 small nuclear ribonucleoprotein B'', RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0030619	Molecular Function	U1 snRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-