Gene detail

Detailed information of HS21056 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS21056	COMM DOMAIN-CONTAINING PROTEIN 1	chr24	2247883	2250299	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS21056

ATGCCGTGCGGGGACGGCCTTCACGTGACTCGCTGCTTCCgCGTTCACGTGACAGAGAAGCGAAACATGGCGGACGTGGACGCTGCGAAGGCTCTGAGCGGCTTGtTGAGCGGGATCGCGCAGCGCGTCTACCACAACAACGAGGCCGTCACGGAGGAGCTGCTGCAGCGCGAGCTCTACCGCGAGCTGCCGCGCGAGGAGTTCACGCTGCTGCACGAGCGCATGAGAGGCCTCCTCAAGGTAAGGCAGCCCCTAGCGGCACGGCCtggaagtgacatagcacaaatacatctgtatattatgtgtatttaggatctctctctctctatctatatatttatatgtatatatatatatatgtatatgtgtgtctatatatatatatatatatatatatatatatatagatatagatatgtgtatgtgtgtgtatatatatatattctatatatatgtgtatatatatacatagatatgggtatatatgtatgtgtgtgtgtatatatatatatatgtgtgtgtatatatatgtatttatatatatatattatttttgttgttgaaatatatatgtattcatatatatgtatttatatatatatatgtatgtgtatatatatatacatatatataaaaattcaaaatcatgctttagttgctttttatatgaatatgttctcaatgtaaaagGCCTCTCCCCTGTGTGTCCCGCCTCTCGCCAGCAGGGGGCAGCACCAACACACTTTACCTGTTGTCACTGCAGCTCCACTGTCTCTTCAGGAGCACACGACTTTAAACCAGAGGGAAAACataaataaataaaaaacataatacaattgtataaatattgttaaataaataaCAGACAACATAAGTCGATTCATTAAATTGTTTCACAGAATACAAACGAGGTAAAATACACactttatacttctccaccacatcttggagggaaatattgctcttttttttcttcttttttctccactacatttaGTAAAACACAAGATATCCTTATAAGATATGATGCAGTACTATATTACTAATACACCCTGTACTATACAAAGTACATGCTACAACAGTATATGTATACTCTTACATGTATTCAATGATAACCCTTTGGCCATCCTGCATGATGAATACTTTGACTTTTTATACCTTTAGTACATATTTAGCATTTTCCTTATGATACTTTTTGTATTTTCATGTAAGAAACATTTAGATTTAGGACTTTTATGTGTATATATGTGTATTTTTTAAAAGACTTATAATAGTAAAGATCATCTTCTCTTCCTGCcAGTTCTCCAATAAACTAAATGGAACCTAGTTGGTTCACAGCGGACCGGCTTGTGTTTATTCTGACGGATTAATCCTGCTCCGAGGTTTTTAATGCCCCTCCCCCTCTCAGTCCATCGCCGCGGCCGACATGGACCCCGCCCAGCTGGAGGCCTTCCTCACGGCCCAGACCcggcggcagggcggcggcggcgTGACGGCCGAACAGGCCGCCGCCCTCTCCCGCTTCTGGAAGAGCCAGCGAGTCCGAGTGAGGGAGAGCCTGCTGGCCCAGAGCCGCTGGGAGCCCGGCCTGAGGGGCCTCTCCTGGAGGGTGGACCTCCAGACCGCCGCCAGCCGGGGGGGCGCAGGCGGCGGCGGTGGCCCCGTGGCCCTCGTGGAGCTGGAGCTGGGCAGAGCCGGACAGGTGAGGCCCGACGGAAGGTTTAAGGTGGCATGAAAGTTTGGGTCGAGAAAGATGAAGTGGTGTCGGGTAAGAGAAGGAGACGCCGGTCCAAGATGGCCGACACGGCGTCGGACATCCACGAGGGCTGTTCCTCCCCTGAGCCAATAGGAGAGCTGCATTTCCCCAAAGGGAGTGGGGGAAAGAAGCTCCTCCCACAAACGCACCCGACTGTTGAGACGTGAAGCTCCGCCCCTTTTTTAAGTGAGAGTTACTCCCTGTGAAAACACAGGACGGGCCGGCCCGACCACGAGAACCGGTCGGGCCGGCATCGCTGAGGcttgttgttgttgttgttgttcttcttcttcttcttcctcCTAACTTTCACTGGATTAAATTACTTGTATATTTTTTTTACGTTTTTCATTAAAAAAATGAACAAATGCCGTTTTTACAGAAATAAATTCAAATATTTTACCTAAATTCCAAACAAAAGAAATCACACACAATGTTATTTTAAATAATGACATGACATAATGTTGAGCTTCTCTcTCTGGCGGCCGAGCAGCTGAACCGTTTAACTTGTTGAACCTCTTAACGTCTGTAATCTTTGATGTCGTTTCCTCCTCAGGACTCTGAGTTCGTGTGTCTGGAGTTCGACGAGCTCAAAGTCAACCAGCTGCTGAAGAAGATGGCCGACGTCCAGGAGAGCGTCGACCGCATCGCTCCGCGCACCATGCCGTGCGGGGACGGCCTTCACGTGACTCGCTGCTTCCgCGTTCACGTGACAGAGAAGCGAAACATGGCGGACGTGGACGCTGCGAAGGCTCTGAGCGGCTTGtTGAGCGGGATCGCGCAGCGCGTCTACCACAACAACGAGGCCGTCACGGAGGAGCTGCTGCAGCGCGAGCTCTACCGCGAGCTGCCGCGCGAGGAGTTCACGCTGCTGCACGAGCGCATGAGAGGCCTCCTCAAGTCCATCGCCGCGGCCGACATGGACCCCGCCCAGCTGGAGGCCTTCCTCACGGCCCAGACCcggcggcagggcggcggcggcgTGACGGCCGAACAGGCCGCCGCCCTCTCCCGCTTCTGGAAGAGCCAGCGAGTCCGAGTGAGGGAGAGCCTGCTGGCCCAGAGCCGCTGGGAGCCCGGCCTGAGGGGCCTCTCCTGGAGGGTGGACCTCCAGACCGCCGCCAGCCGGGGGGGCGCAGGCGGCGGCGGTGGCCCCGTGGCCCTCGTGGAGCTGGAGCTGGGCAGAGCCGGACAGGACTCTGAGTTCGTGTGTCTGGAGTTCGACGAGCTCAAAGTCAACCAGCTGCTGAAGAAGATGGCCGACGTCCAGGAGAGCGTCGACCGCATCGCTCCGCGCACC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07258	COMM_domain	COMM domain	Domain	Interproscan
PF17221	COMMD1_N	COMMD1 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017920	Domain	COMM domain	Interproscan
IPR033776	Domain	COMMD1 N-terminal domain	Interproscan
IPR037351	Family	COMM domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21199	COMM DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005768	Cellular Component	endosome	Interproscan
GO:0031398	Biological Process	positive regulation of protein ubiquitination	Interproscan
GO:0032434	Biological Process	regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0055070	Biological Process	copper ion homeostasis	Interproscan
GO:1902306	Biological Process	negative regulation of sodium ion transmembrane transport	Interproscan
GO:2000009	Biological Process	negative regulation of protein localization to cell surface	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-