Gene detail

Detailed information of HS20962 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20962	BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE	chr24	517817	520117	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20962

CCTCCTCACCCCTGGGAGAAACCGGAGGAGAACCAGCAGGGCGGCGCTCCGGATGAGGTGAGTGCACCGCATGTCACCATGCTGTAGCTCCTCCCACAGGAATGtccttcacctccttcacctccttcctcccttcTCTCGGTCCCTCTTCTACAGGTCGGAGACGAAGACCAGCTGAAGGAGCGAGACCCGGAGGTCCCGCCGGTGGGGGCCGAGCACCTGGACGCGCTGTACAAGCATCCGCTGCCCGACCCCCTGGAGGCCATGGGCGACCTGCACACCCGCCAGCACCTGCTCCCGGAGGACCGCACGCCCTACTTTGTGCGCACCAAAGCGGGAGCGCTGTGTTTCCGACAGGGCACGGAGGTGGCCGCCCAGAAGGAGTACTCGGGGAAGTTaggaggaggaggaggaggaggaggGGCCGGGCAGAGGAGACCCCTGGAGGTCCAGCTGAGGACCTCCGTCGCCCCGAAGGCCAAGGCCAGGTCCAGGGGGGTCGGCGTGGGCGGCGGCAAGCGGCTGGTGAAGTGCGTCTGCCGGCCCGGGTGGCACGGGCCGTACTGCGGCGTGCCCACCATGGTGTACCACTCCAACCTGCCCACCAAGGAGCGGCTCACGCCACGGGAAACGCCGCGCAGGGTCGTCAACGCCATCAACGTCAACCACGAGTTCGACCTGCTGCACGTGCGCTTCCACGAGCTGGCGCTGGCCGTGGACGTCTTCCTCATCTGCGAATCCAACTTCACCGCTTACGGAGAGCGGCGGCCCCTGAGGTGAGGACCCGAGTTCAGAGCTGAGATATTATGTTCCGTCTTTTATCTTTCAGGAAAGAATAGAAACCAACGGTTGTAAAACACTGACCCGTGGCGTCGCCCTCAGCTTCCTGCGGCTCCTCCTCAACGGGACGTACGACTACGTCCGTCACAAGATCCTCTACGTGTTCCTCGACCACTTCCCGGACGGCGGCCGGCAGGACGGCTGGATCGCCGACGACTACCTGCGCACCTACCTGACACAGAACGGGCTGTCGCGGGTGACCGGCGCCCGGCCGGACGACGTCTTCGTCATCAACGACGCCGACGAGATCCCGGCGCGCGAGGGCCTCCTCTTCCTCAAGCTCTTCGACGGCTGGACGGAGCCCTTCGCCATCCACATGCGCAAGGTAGCGGcggtagcggtagcagtggtagcggcggtagtaaaaacgacagtggtagcgctagtaaatggcggtagtagcggcggcagcgactgcggcagcggtagcagcagcgttattgtagcggcagcggcagcgttagtgtagcgttagcgttagcgtagcggcagcgttagcgtagcggcagcgttagcgtagcggtagaggtagcggtagcattagcagtagcgatagaggcagcgttagcgtagcgttagtatagcggtagtggtagcgtagtggtagcagcagcgttagcgtagagtagcggcagcgttagtgtagcggcagcgttagcgtagaggtagcgttagcggtagcattagcggtagcgatagaggcagcgttagcgttagcatagcggtagtggtagcgtagtggtagcggcagcgttagcgtagagtagcggcagcgttagcataacagcagcgttagcatagcggtagtggtagcgtagtggtagcggcagcgttagcgtagagtagcggcagcgttagtgtaacggcagcgttagcggtagtggctgcgttagcggcagcgttagcggtagcgttagcggcagcgaccGGTTTCCGGCGGCTCGCCGCTCACGCCCTCGTCTCTGTCTGCAGTCGCTCTACGGATTCTTCTGGAAGCAGTTCGGCTCCCTGGAGGTGGTCTCCGGCTGCACGGTGGGGATGCTGCGCGGCGTCTACGACGGCGACGGCATCAAGCTCCGCCGCCGCGAGTACTACACCATGCCGGGCTTCCGGCGCTACGAGAACGACACGGGCCACATCCTGGTGCAGTGGTCCGTGGGGAGCCCCTTCCACTTCGCCGGGTGGCACTGCTCCTGGTGCTTCACGCCCGCCGGCATCTACTTCAAGCTGGTGTCGGCGCAGAACGGAGACTTCCCGCGTTGGGGCGACTACGAGGACAAGCGGGACCTGAACTACATCCGGGACCTGATCCGGACCGGCGGCTGGTTCGACGGCTCGCTGCAGGAGTACCCGCCGGTGGACCCCAAGGAGCACATGTACGCCCCCAGGTACATGCTGGAGCACGCCGACAGGTACGGATACCTCCTGGAGAACCCCTACAGCAGAGGCCTCGGCGAGGGCCCTCCTCACCCCTGGGAGAAACCGGAGGAGAACCAGCAGGGCGGCGCTCCGGATGAGGTCGGAGACGAAGACCAGCTGAAGGAGCGAGACCCGGAGGTCCCGCCGGTGGGGGCCGAGCACCTGGACGCGCTGTACAAGCATCCGCTGCCCGACCCCCTGGAGGCCATGGGCGACCTGCACACCCGCCAGCACCTGCTCCCGGAGGACCGCACGCCCTACTTTGTGCGCACCAAAGCGGGAGCGCTGTGTTTCCGACAGGGCACGGAGGTGGCCGCCCAGAAGGAGTACTCGGGGAAGTTaggaggaggaggaggaggaggaggGGCCGGGCAGAGGAGACCCCTGGAGGTCCAGCTGAGGACCTCCGTCGCCCCGAAGGCCAAGGCCAGGTCCAGGGGGGTCGGCGTGGGCGGCGGCAAGCGGCTGGTGAAGTGCGTCTGCCGGCCCGGGTGGCACGGGCCGTACTGCGGCGTGCCCACCATGGTGTACCACTCCAACCTGCCCACCAAGGAGCGGCTCACGCCACGGGAAACGCCGCGCAGGGTCGTCAACGCCATCAACGTCAACCACGAGTTCGACCTGCTGCACGTGCGCTTCCACGAGCTGGCGCTGGCCGTGGACGTCTTCCTCATCTGCGAATCCAACTTCACCGCTTACGGAGAGCGGCGGCCCCTGAGCTTCCTGCGGCTCCTCCTCAACGGGACGTACGACTACGTCCGTCACAAGATCCTCTACGTGTTCCTCGACCACTTCCCGGACGGCGGCCGGCAGGACGGCTGGATCGCCGACGACTACCTGCGCACCTACCTGACACAGAACGGGCTGTCGCGGGTGACCGGCGCCCGGCCGGACGACGTCTTCGTCATCAACGACGCCGACGAGATCCCGGCGCGCGAGGGCCTCCTCTTCCTCAAGCTCTTCGACGGCTGGACGGAGCCCTTCGCCATCCACATGCGCAAGTCGCTCTACGGATTCTTCTGGAAGCAGTTCGGCTCCCTGGAGGTGGTCTCCGGCTGCACGGTGGGGATGCTGCGCGGCGTCTACGACGGCGACGGCATCAAGCTCCGCCGCCGCGAGTACTACACCATGCCGGGCTTCCGGCGCTACGAGAACGACACGGGCCACATCCTGGTGCAGTGGTCCGTGGGGAGCCCCTTCCACTTCGCCGGGTGGCACTGCTCCTGGTGCTTCACGCCCGCCGGCATCTACTTCAAGCTGGTGTCGGCGCAGAACGGAGACTTCCCGCGTTGGGGCGACTACGAGGACAAGCGGGACCTGAACTACATCCGGGACCTGATCCGGACCGGCGGCTGGTTCGACGGCTCGCTGCAGGAGTACCCGCCGGTGGACCCCAAGGAGCACATGTACGCCCCCAGGTACATGCTGGAGCACGCCGACAGGTACGGATACCTCCTGGAGAACCCCTACAGCAGAGGCCTCGGCGAGGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04724	Glyco_transf_17	Glycosyltransferase family 17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006813	Family	Glycosyl transferase, family 17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12224	BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003830	Molecular Function	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	Interproscan
GO:0006044	Biological Process	N-acetylglucosamine metabolic process	Interproscan
GO:0006487	Biological Process	protein N-linked glycosylation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-