Gene detail

Detailed information of HS20872 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20872	PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12	chr23	22791174	22792702	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20872

ATGGCCGAGGCCGGAGCCCACCTGACCTCGGCCGCGGCCCGCGAGCGGCCGTCCATCTTCGAGGTCCTGGCCCAGGAGTCCCTGATGGCGGCGGTCCGCCCGGCGCTGAGGCACGGCGCCAAGGTGAGCGCCAACGTCCGTCTCGTGTCCGTGAGGCCGTCTGTCGGCCGACTCTCTGACACTGATTCTCCAGGTTCTGGCGGAGTCCGACCCGCCCCGCTTCGGCTTCCTGTGGCGGCGCTTCGATGAGCTCCACCTGCTGCTGGACCTGCTGCTCCAGCACCACTTCCTGTCCCGCTGCGGCGCCTCCTTCTCCGAGAACTTCTACGGCCTGAAGCGGGTGTGGGGGGGGCGGGGCCTCGGCCTGCGCGGGGGGAGGCGCTGGCGCTCGCTCCTCCTCCTGTGCCTGGCGCCGTACCTGCGCGCCAAGCTGGACGCCGCGTTGGCGCGCCAGAGGGACGAGGAGGACTTCTCCATCCGGCTGGAGCAGAgcggcgggcgccggctgtaccgggcggccgcggcggcgtggccgtacgccggcgccgcctggcggGCCTGGGCCTTCTGCCAGCAGCTGCTCTTTGTCTTCGGGGCCGCCGGCACCCACGACCCCCTGCTGTGGCTCGCCCGGGTCCGGCTGGCGCGGCTCGACGCTCAGGACCTCAGAGACGTGGCGCCGAGGGGCAGCAGACCTGGCAACCCGGCGGAGGGCAGGTACGTGTGGGCGCCGCGCTCAGGCACACGGAGGGGCGCCCGCTTCAGGGGCTCGGTCTGTTCGGTCGGCTCGGGTCCAAACCGCTTGTTGAACTGGGCTCACGTGTCGGGGGAGAACAGGCTGCAGGTGTGAAGAGGTGCGGTCAGACTATATGTCGTCGTGGAAACCCTCTTTGGGTCGTCGAGGTTCTGACCGGCTCCGAAGCTTCTTCGTCTTCCTCGAGCGGCAACTCAACTTTTACAGCTAGACAATCGGCTTCACCGATAAACCGGTTCCTCACAGGAGGAGAGCAGCTCTAAAGTACCGACCCGGCAGAACCGCGACCCGCGGACCGGGTCGGTACCGTTGTTGGTCACCGGGTCTGGAGGGTCTGGTGTTTGGATCTCAGGGAGAAGTCAGGCGGTGAGGAAGATGTTGACTCGGTGAGTCGGCGCTCCTCTCCCTACCCACAATGCATTGTTCTCCgGTCCGCAGCCTGGCGTCCCTCTCCGCCTCGCTGTCGCTGGGCGTCTTCTTCCTGCGGTTCCTGGAGTGGTGGTACTCCTCGGCCGACCGGGACGGCGTGAAGTcgctcgccgcgccgcccgctccgccgccgccgcTCCACCTGCAGGGCGGGCCGGACGCCCCGCCCCCCGGCGAGTGTCCGCTGTGCGGCGGGCGGCGCTCCAACGCCACGGCGCTGTCCACCTCCGGCTTCGTGTTCTGCTACCGCTGCGTCTTCGCCTACGTGAAGGCCAACCGGCGCTGCCCGCTCAGCGGCGTCCCCACCGAGCCGCAGCACCTCGTCAAGATCTACTGCCCCGAGAGCATGGCCGAGGCCGGAGCCCACCTGACCTCGGCCGCGGCCCGCGAGCGGCCGTCCATCTTCGAGGTCCTGGCCCAGGAGTCCCTGATGGCGGCGGTCCGCCCGGCGCTGAGGCACGGCGCCAAGGTTCTGGCGGAGTCCGACCCGCCCCGCTTCGGCTTCCTGTGGCGGCGCTTCGATGAGCTCCACCTGCTGCTGGACCTGCTGCTCCAGCACCACTTCCTGTCCCGCTGCGGCGCCTCCTTCTCCGAGAACTTCTACGGCCTGAAGCGGGTGTGGGGGGGGCGGGGCCTCGGCCTGCGCGGGGGGAGGCGCTGGCGCTCGCTCCTCCTCCTGTGCCTGGCGCCGTACCTGCGCGCCAAGCTGGACGCCGCGTTGGCGCGCCAGAGGGACGAGGAGGACTTCTCCATCCGGCTGGAGCAGAgcggcgggcgccggctgtaccgggcggccgcggcggcgtggccgtacgccggcgccgcctggcggGCCTGGGCCTTCTGCCAGCAGCTGCTCTTTGTCTTCGGGGCCGCCGGCACCCACGACCCCCTGCTGTGGCTCGCCCGGGTCCGGCTGGCGCGGCTCGACGCTCAGGACCTCAGAGACGTGGCGCCGAGGGGCAGCAGACCTGGCAACCCGGCGGAGGGCAGGCTGCAGGTCCGCAGCCTGGCGTCCCTCTCCGCCTCGCTGTCGCTGGGCGTCTTCTTCCTGCGGTTCCTGGAGTGGTGGTACTCCTCGGCCGACCGGGACGGCGTGAAGTcgctcgccgcgccgcccgctccgccgccgccgcTCCACCTGCAGGGCGGGCCGGACGCCCCGCCCCCCGGCGAGTGTCCGCTGTGCGGCGGGCGGCGCTCCAACGCCACGGCGCTGTCCACCTCCGGCTTCGTGTTCTGCTACCGCTGCGTCTTCGCCTACGTGAAGGCCAACCGGCGCTGCCCGCTCAGCGGCGTCCCCACCGAGCCGCAGCACCTCGTCAAGATCTACTGCCCCGAGAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04757	Pex2_Pex12	Pex2 / Pex12 amino terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006845	Domain	Pex, N-terminal	Interproscan
IPR017375	Family	Peroxisome assembly protein 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12888	PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0005779	Cellular Component	obsolete integral component of peroxisomal membrane	Interproscan
GO:0006513	Biological Process	protein monoubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016558	Biological Process	protein import into peroxisome matrix	Interproscan
GO:1990429	Cellular Component	peroxisomal importomer complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-