Gene detail

Detailed information of HS20825 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20825	CHROMOBOX PROTEIN	chr23	21468018	21470222	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20825

atgcagaagcacaaggagaaggaggagaagaagaaggagggcaagaggaaagtggtcaacgaggcctcgggagactcggaggagcgagggagcaagaggaagaaagaggaggCGAGTAAAAAAatatataaaatactagttattttcattttaactaatatatatatatattagtatatatatattatattatatacacacacacgggtgCTGTTATCCTGTCTCCTCCCTGCTCTGGTCTTGTGCTCATCAACTTCCTGTCTCCAGGGTGAGAAGGCCAGAGGTTTCGGTCGAGGTCTTCAGCCAGAGAGGATCATCGGAGCGACGGACTCCAGTGGAGAGCTGatgttcctcatgaagtggtcagtcgcgtgtgcgtgtgcgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgcgctctgagtcaaatgagaCCTTTTGAAGAACTTTGCCCTCTTGTATAGAACTTTTTAGGCTCCTCAAGTACTACACCGAAGTGCACATTTGGGGTACTTGCACTACTGATTGTGGACCTCATTGGCCCCCTGGAGCCGCCAGTCCTCTAGCGGGGCTTTGTGGCTGCCTGTTGCCGTAGACTACCGTACACGtGAATgTTCTCTTGTCTTTcGTCAAGCAAGAGAAAGTAGAGCCACTCGTTTTCTCTCCTCGTCTAACAGGCTAGCCCGTTAGCGGGGCCCAGGCTAGCCCGTTAGCGGACCTAGCGCACACACTAGCGAGTCCCTCCAGACATTGCACCGGCTTTCTTAAATGAACATATTTGCACTTCTAATAAAGCGCTGCTTTAAAGGCTCTTAAAGTAAAACCACGACGAGCCTCGGCTGCAGTATTAAAAGAGGATCTTATGGCTCCACTCGGGCCCCGGCTCCACTAGCCCTTGGGTAAGAAACCTAACTCCATAAACtagggatgcaccgatctgatcggccgatattcccattatcggttttgaccggcgttctcaaaacggccgatcagatgacgtaacatctgtgagaactatcagacgtttcaatcgccgcgcaccgcaacggagacgatgcgcccggcgagggccgcagagtgagaggtcagaggggatcctcaccaccgagcggcgtccccgtcccccgagttgaatctctgggtcgactcagccgactctcacatgtctgcccctatagactgatgctcacggtaaacacattcgatccggagcgcgcgagggttttgataaagtgagcggaaagaaccacgtgaagcaacatccggttttcaaaataagatgtcgacaaatcaaacactaacatataaaagtaaacaatgaactgattttgtatctttatagatcgtttctgagatttagcttaaattatgctaacagtaaaacatttttactgtaccaaggaagagtttataaaaataagtcagacttttgtatgttaagaaaagtcctgtatatagatttccccaagagttccaggaaatgaatgatgcagatgtgttccatacatatctgaaatcccctacaatagcaatcaatacattttaatgtatcaattaggacatttttcaaagtaaaagtcctaaatgtttaaggaaatctgtaatttatttaatgtttgagttgctttatatatgtatttcctcatagtcctaggcaataatgctacacaataaatagaatgcttcaatcgactcggtgatcggtattatcggatcggcagatactgatttcagtgatcggtgatcggcaccaaaaacctgatcggtgcatctctaCCATAAGCTGCTCCTCGCTGTGCCTCCGGTGTGATGGTTAGCCGTGATGGGCAGGTGGAGGTGTGAATGATGTCATGTCGGGTTGGGGTGCTTTAAATACAGATCATATGTTTATTGTTGAAGGAAATCATGTCTAACACTtctctctctctttgctttcctctgcctcgcttggtttctctcttgcctctcaactcgatcttctctccctttctcATCCCCCTTTCATACCGTTTCTCTTCATTTGAAAAATCAACAGGAAGAACTCCGACGAGGCCGACCTGGTCCCGGCCAAGGAGGCCAACGTCAAATGTCCCCAGGTGGTCATCTCGTTCTACGAGGAGCGCCTCACCTGGCACTCTTACCCCACggaggaggaggagaagaaagaggaagataaaaaggacatgcagaagcacaaggagaaggaggagaagaagaaggagggcaagaggaaagtggtcaacgaggcctcgggagactcggaggagcgagggagcaagaggaagaaagaggagGGTGAGAAGGCCAGAGGTTTCGGTCGAGGTCTTCAGCCAGAGAGGATCATCGGAGCGACGGACTCCAGTGGAGAGCTGatgttcctcatgaagtgGAAGAACTCCGACGAGGCCGACCTGGTCCCGGCCAAGGAGGCCAACGTCAAATGTCCCCAGGTGGTCATCTCGTTCTACGAGGAGCGCCTCACCTGGCACTCTTACCCCACggaggaggaggagaagaaagaggaagataaaaaggac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01393	Chromo_shadow	Chromo shadow domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR008251	Domain	Chromo shadow domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR051219	Family	Heterochromatin-associated chromo domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22812	CHROMOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005721	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006325	Biological Process	chromatin organization	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-