Gene detail

Detailed information of HS20792 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20792	NUCLEAR BODY PROTEIN SP140	chr23	20698381	20702461	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20792

ACGAGGAGCCGGCCGGTCCATCATCTCAATCGATTCCCAGGAAGaaAAAGTCAAAAAAAATATGCTTCTGTAAGCCCCTCCCCCCCACATACACACACAAAGAAGTTTGTCGCGTgGAACAAAGAGGtcaacgtattatttcaacgtattatttTCCTGTTCTGCAGCCTCTCCCCTGAAGAAGGGCGAGGAGAAGCCCATCTGGAGCaGGCCcatCTATAAGCTGCAGCTGCCtGTGACCTGTGGGGACCAGGCGGGGACACTGCATAGAAAgCTaCTGGCTAAAGGTGTGTAAGACTCCAGGACTGAAGAACACACATCGTCTCCTCTAACGAGTGAAGCGGGGCGGATGGTGACCGGTTGACACTAACGCAGCCTGTGAATGTTTCAGGGaAGAAGTGCATTGTGGTCAAGAAACaGTGGTTCACTCCCAGTGAGTTTGAGAGTTCTGCGGGGAAGAAGAGTTCCAGGAACTGGAAGgcGAGCATTCGCTGTCAGGGCACCCAGCTGGGGAAGCTGATTCAGGTTTGCatttttcatttatttatttgttcagtttatttaCgCCAACAAATAATGACTGAATCAAATGTTCAAATATGAGAGTGAATCccagACTGTTACTTCAACGTGTGCCTCGGGACGTGGATTTGTCGGGAGCGCCGTTCATTTTCTGTTTTGTTTCTTTCGCTGCAGGAAGGTCACCTGAAAACAGGAACGTACAAAGGAGGGTGCAGAAAGGTGAGAAGAACAACTGGTGAAAATACATgAAaAGATACATTCAGACTTTATGGTGCATCTTCTCGTtGTTCGTGATCCTGATCTGAGCCATGTCCCTTATTCTTccTCTTGTTCCTCCTGCTAGGCCAATAGGTCACTGTTCCCGTCTGGTCACGCAACTGCAGGTTTGTTTTATTCGTGATTTGATAAAACTACAGGAAAAtACATGGAGTGCTTGAGTATACACGCTAATgTGTCAGAAAAACCAACATCCTCCTTCTCTGTTTTTCCTAGTGTCTgacgaagatgaagaagcaggagaagaagaagatgaagaagaagaagcagaagaagaaaaagatgacgaaggagaagaagaagaagatgatgaagaagaagaaggagatgatgaagaagaagaagaacagaagaagaagaagcagaagaagatgaaggagaagaaggagatgatgaagaagaaggagatgaggaagaagaagaacagaagaagcagaaggagatgatgaagaagaagatgatgaagaagatgaagaagaagaaggagaagaaggagatgatgaagaagaaggagatgatgaagaaggagatgatgaagaagaagaaggagatgatgaagaagaaacagatttttttctttttctaatggtttatttaataagggacagtgcacattgataaaaactgtgcagtaaatgtgccagagttagccaagaggctatttttcatctgtagtcccaatgttgctgatgttaagaacaaacctaaaaacataagattacaaatacaatctacagataaagcaaataaaataagggagaacaatgttaaaatggacagaataaaaacataatgtcagagatacaacgtaaaagcttacagactaaatgtgacatataactgcaaacaggtgaacgacaagagaagacacgcaggtggagtaaaacggccgaccagcaagtcaagacacacagagaccggacaacagacagacaacaactgacagacagacaaaatgaaagtccaacctgggcagatggaggagggaggagccgttacagtctagtgctgacagagctgggtagtaatgtaccatttctttgtttctgcttaacccccacccgtttttttaggtttctgctcgaaatgacatacccaaactaaaaagggtgtagctctgcaaccacacaagctatttgaataatgttggtgttataataaagggaacacatgtgagcttttgttcagatgtgtaaatataagcatatatgttactggttaagagtaaataaagatgaatcttctattttcatagaagtttcaggttcgattagaaaaaaaagcactttcaggatgaatatatcctggatggatgcacagcaaaggcctaaaatcacccagataataatacaacttgtgaacagactctctgcaaagtttgactcagaaaaaataaagcagaacaatagttggagactttttagtaaagagaatttaggcgaggtctctaacatttgcatttgggcacattgaagcaccatctgtgccatttgacttttctcatgtaccaaaccatttctttcactttcacttttacttgtggtgatcaatacatgcaaatacatcatcatgtggctttaaaacagtaaatcaaagataaaaaaatgatcaaacaaagtggtgctgtgcgcgtgcgtgctgtgcgtaaagccgggttttggatctgtcacagcgcagctgttgcgcgcgcagatatctccgccggggaagggcggattttaaagaacgacacgtcattggaatacttagagccaatagaatcgattggtaccaagaaagacaagattgacagcactgtgagccaatagcagacagaaaggcgtcgccatatttgaaatgtgaaatccgattcgctgaaattgaacttcctgacagctgattatgacgcttccccaaaagtccgcctggtttttaaagggacctacacacacactaaagccatgccagatggaatgcagaggagagaaacgttttttcttcttctcaagaacaaaagtatgttgaatttgctgaatgtaaagctatgaagcgattaatatttctgtgttctttggcttatatctccgtgatactttggtgcagaaggattctgtaaagatatttagaatctgtgtgaagtcctcttgctttcgaacatctcttcttttatgattgcacaaagctacatgtcgctagctacggaaacgttctgagtgggccgacacctgacaaaattatgatcatgatatttgtatttttatttcagttggtgtttgagttgtgtttaaatggctcactgatacttgtagccccagttgtcttctttaatttgatgtacaacatcaatagatttgctcatgtttattaaaatattatagccagtttagaacaaaacatcaaatctgccccacaagtggggcaatggggcttaaGTGGataattattaaaagagttgaatgattgtagctctctgatagatactggaatgtagttccagtcaactgctgcttgtactgagaaagcagcatgactgaaagcacttttcctgagagggacgatacaatcccctctcactgctcctcttgtgagccgatatccagttcgtgtggtgacaaattgatgatgaagaagcagaagaagaagaagaagaagaataaggagatgatgaagaagaaggagaagcagaagaaggagatgatgaagaagaagaaggagatgatgaagatgaagaagaagaagaagaagcagaagaagatgaagaagaagaagatgaagaaggagaagaagaagaagaagaagaagaagcaaaagaagcaggagaagaagaagaagaagaGGGCCGTGAGCTGAAcGAGGGCGACcGCAGCAGAGAAAGCTCcGCAGCTGTCGCAGGTGCTGTTCTCTCCAAAGtGATGATCAGGGTTTTTTAAATGTAGcGTTGATCCAGACTTCCCgTGTGTCCATCTCAGGCGAGGCAGTGAAGAACCGGACCGAGCAGCCAGAAGTCGCCAGGAAGGTGTTCAGAGTCACGTGCCGCGgTGCAGCCGGGACTTTACACGCCAAGCGGTTCTCCTCAGGTAGCGATAActcctcctcctcctcctcctcctcAACACGTGTCGTtGCATGTGTaCCGAGCGGCTCACGCCTCCTCCGACCACCAGGGACTTGTGGGAAGAGTATTCGCACTGAGACCAGCTGGATGACCCCGGTGGAGTTCCTGAAGGTGGCGTcGTGTCCGGCGGACGCCTCTTGGAAGAAAGAGATCCGGTGTGAAGAGGAACCGCTCAGCGTCCTCATCGAGACGAGGAGCCGGCCGGTCCATCATCTCAATCGATTCCCAGGAAGaaAAAGTCAAAAAAATTCTGCAGCCTCTCCCCTGAAGAAGGGCGAGGAGAAGCCCATCTGGAGCaGGCCcatCTATAAGCTGCAGCTGCCtGTGACCTGTGGGGACCAGGCGGGGACACTGCATAGAAAgCTaCTGGCTAAAGGGaAGAAGTGCATTGTGGTCAAGAAACaGTGGTTCACTCCCAGTGAGTTTGAGAGTTCTGCGGGGAAGAAGAGTTCCAGGAACTGGAAGgcGAGCATTCGCTGTCAGGGCACCCAGCTGGGGAAGCTGATTCAGGAAGGTCACCTGAAAACAGGAACGTACAAAGGAGGGTGCAGAAAGGCCAATAGGTCACTGTTCCCGTCTGGTCACGCAACTGCAGTGTCTgacgaagatgaagaagcaggagaagaagaagatgaagaagaagaagcagaagaagaaaaagatgacgaaggagaagaagaagaagatgatgaagaagaagaagaaggagatgatgaagaagaaggagatgatgaagaagaagaagaagaagaGGGCCGTGAGCTGAAcGAGGGCGACcGCAGCAGAGAAAGCTCcGCAGCTGTCGCAGGCGAGGCAGTGAAGAACCGGACCGAGCAGCCAGAAGTCGCCAGGAAGGTGTTCAGAGTCACGTGCCGCGgTGCAGCCGGGACTTTACACGCCAAGCGGTTCTCCTCAGGTAGCGATAActcctcctcctcctcctcctcctcAACACGTGTCGTtGCATGTGTaCCGAGCGGCTCACGCCTCCTCCGACCACCAGGGACTTGTGGGAAGAGTATTCGCACTGAGACCAGCTGGATGACCCCGGTGGAGTTCCTGAAGGTGGCGTcGTGTCCGGCGGACGCCTCTTGGAAGAAAGAGATCCGGTGTGAAGAGGAACCGCTCAGCGTCCTCATCGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01342	SAND	SAND domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000770	Domain	SAND domain	Interproscan
IPR010919	Homologous_superfamily	SAND-like domain superfamily	Interproscan
IPR043563	Family	Nuclear body protein Sp110/Sp140/Sp140L-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46386	NUCLEAR BODY PROTEIN SP140	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-