Gene detail

Detailed information of HS20549 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20549	NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN	chr23	15983498	15985683	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20549

ATGGGCAAAAGCTGCAAGGTGGTTGTGTGTGGCCAGGCTGCAGTCGGCAAAACGGCAGTGTTGGAACAACTACTGTATGCTAACCATGTTGCAGGTATAACTACCCGTTGTCTTCTAGAAATGCGATGTTACATGTATTAGTTCATATAAGACTTCTTACCTGTCTTTGATGCACGGTACATTATCTGTGTTATTACTGTTAATACACATTTATATTATACACAGTATGTTTTTGTGACAGTACTTTTTACTGAATTACATATTTATATCGTAATTGGTTCTATACTGTTTTCTGTGTTTGACCTTTGCGACACTTGTAGGACTTCTATCTCTTCTTGCCATGTTTACTGCAAGCACCAGACGCCAAGGCAATataaacttgaatgggcactcggtagagcgcataccttcgcatatcacaagattgggcattgaattatgaacatgttggcattagttgcatgccaattggacaaaaatgtatcgtgctatggtataaaaaaaagatgttgacctttccatgaccttgacctttgacccgattgatcccaaaatctaatcaaatggtccccggataataaccaatcatcccaccaaatgtcatgcgattcggttcaatactttttgagttctacgaataacacgcatacaaataaataaataaataaatacacggcgatcaaaacataaccttccgcattttcaatgcgaaggtaatAACATGCTTGACAATGCACTTCTGATTCGGATTGGACTATTACGTTTGATTGACATACATTCTTGCTGGTATACTGGTGCATTTAATGTCATTTAATATTACATGCACTCTGTAATTATTTGGAAATAGCACATTAACAAGCATATTATATTATTTGAATGACAGCTTATGTAATTTAATAAACATTGTCAACTTGCTCATGAAGGCATAACCAGAGAGGCACTTGTATGAGAAGCCAGAACTTATTATGAAGAGAGCTGATTGCATACCTAACTCAATGTATGACATTGAGCTTGTGATAAGACCCGAGAAGAATAAAGTATCATGACGCGGTCTTTTTGAGTTTTGTCGATCAGCATTATACATCTTACTTTTAAACAGTTGCTAAAGTTTTCTTGGAAGTACATTAATTTATTGGCATTAACTCTTTCTGACATGCTCGCAGCCAAATTAGATTTAGGTTCCCTAAAAATTACTGCAGGTTGTATCCCCAGCCCAAGACTAATGTAATGTTGAACATATTTCCTGCATATGTTTTCCTCTATTGACACCAAGTCATATAAAGTATATTGCAGTTAGTTTAACATTACATATGTGCTTGTCTTTGTTTGTCCACCGTTAGGTTCAGAGCCCATGGAGACCCTGGAGGATATCTACATCGGCTCCATAGAAACTGACCGTGGCACTCGAGAGCAGGTTCGCTTCTATGACACCCGCGGGCTCCGGGATGGGATGGAGTTTCCTCGACACTACTACACTTTTGCAGATGGCTTTGTTCTCGTCTACAGCGTTGACAGTAAAGAGTCCTTTAAGCGGATGGAGGCCCTCAAGAAGGACATCGACCGCCACAGAGATAAGAAAGAGGTGAAGACCCAAAACATTCATATGCTTAGACAGATTAATGTAATGCTACTTAAATAAAGAGTTAATTTAGAGGACACCAATCTGGAGAACGTACAACAGACAAGTCTTCAAACTTGACTATGTAAACATTGTTAATGGTCCGCTTTATATTTATGTTTCCCGAGCAGCGCAATGGAAATGAATAGATCCGTAGTTTTCTTCAATTCTAATTCCAATTATTGGAATGAGATCCATAAATGATTCGTTTGAATGGTATTCAACAGACAACCTGCCACAGTAATTGCCATTGTTAATTGTGCAGCCGATGTGAGCAGAGCGAGAGATTACGCTGCCGTGAAGCTAACCTGATGGTCCTGATCCGCAGGTGACCATTGTTGTGCTGGGGAACAAGCTGGACAAGCAGGAGGAGAGGAGAGTTGACTCTAATATGGCTCAGAACTGGGCCAAGAATGAGAAGGTGCGTCTGTGGGAGGTGTCGGTGGTGGACCGGCGCACGCTGATCGAACCCTTTGTCTACCTGGCCAGCAAAATGACTCAGCCACAGAGCAAGTCCACTTTCCCTCTCAGTCGCAATAAGAATAAGGGCAGCGGGTCTACAGACAGCATGGGCAAAAGCTGCAAGGTGGTTGTGTGTGGCCAGGCTGCAGTCGGCAAAACGGCAGTGTTGGAACAACTACTGTATGCTAACCATGTTGCAGGTTCAGAGCCCATGGAGACCCTGGAGGATATCTACATCGGCTCCATAGAAACTGACCGTGGCACTCGAGAGCAGGTTCGCTTCTATGACACCCGCGGGCTCCGGGATGGGATGGAGTTTCCTCGACACTACTACACTTTTGCAGATGGCTTTGTTCTCGTCTACAGCGTTGACAGTAAAGAGTCCTTTAAGCGGATGGAGGCCCTCAAGAAGGACATCGACCGCCACAGAGATAAGAAAGAGGTGACCATTGTTGTGCTGGGGAACAAGCTGGACAAGCAGGAGGAGAGGAGAGTTGACTCTAATATGGCTCAGAACTGGGCCAAGAATGAGAAGGTGCGTCTGTGGGAGGTGTCGGTGGTGGACCGGCGCACGCTGATCGAACCCTTTGTCTACCTGGCCAGCAAAATGACTCAGCCACAGAGCAAGTCCACTTTCCCTCTCAGTCGCAATAAGAATAAGGGCAGCGGGTCTACAGACAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042227	Family	NF-kappa-B inhibitor-interacting Ras-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46152	NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0032484	Biological Process	Ral protein signal transduction	Interproscan
GO:0032794	Molecular Function	GTPase activating protein binding	Interproscan
GO:0043124	Biological Process	negative regulation of canonical NF-kappaB signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-