Gene detail

Detailed information of HS20513 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20513	60S RIBOSOMAL PROTEIN L19	chr23	15434064	15436649	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20513

ATGCTCAGGCTCCAGAAGAGGCTGGCCTCCAGCGTCCTGCGCTGCGGCAAGAAGAAGGTCTGGCTGGACCCCAACGAGACGAACGAGATCGCCAACgCCAACTCACGTAAGTAACGGTGATTATACAGATGACAACTATTGTTAGTTTGTGTGAATTAACaTAAGTTAAACGTGCACTAGCTTGTTACTTGAAGTGATGCTGAGGATCATGTCGACTGACACGTTTGTAATGTCTGTCTTGTCGAGCTGATGTGTGCTTATCTGCTTtGGTGAGCCGATGAGAAACACAAATATACATTTAAATAAAAAGAAGCTGATCTCAAGATATCCTCACATGACCTTAGAGTGGTCGCCCAAcTTAGCTGAAGCCTATATTATTTTATTATAACTAAATAGTTTCTTTCATAAGAACCTCCATGCATGATACATGTTTGTGTCAGGCAACATATAGTTCAAATCACATTAACATATTTTCTCCATGTGTGTGCTTAAATGTCTATTGGCAATATTGCGAGGTCTCAACTCTCTGTTTTACAAATATATATTGCTTTATTGCAACAGATCATTGTTGAGAGCTCAGTGCATCCCTATAGCTCACTTGTTTCCTTCTCTCTTCTCTTCAGGTCAGCAGGTCCGTAAATTGGTGAAGGATGGTCTCATCATTCGCAAACCTGTAACTGTCCACTCCCGCGCCCGCTGCCGCAAGAACACACTGGCACGTCGCAAGGGAAGACACATGGGAGTTGGTGAGTTCAGTTCTCGtGTAAAGATGGCTACGATGCAGCGCTGATCCGAGTCTGACTACATGGGTGATGACGATCGATACCTTCAGGAGAGTTGACATGCATTACTTCTTCCTTTTCCCAGGTTAGAGAAAGGGTACAGCCAACGCTCGTATGCCAGAGAAGTTATGCTGGATGCGCcGCATGCGGATCCTGCGCCGTCTGCTGCGTCGCTACAGGGAGGCCAAAAAGATCGACAGGCACATGTAGGTTCATGACACCGTCACTTCTGCTCTTATTGATGTGGCCTGTCTTGTTTTTCTAATGCACATTTTGTTaTaATATTAGTGTTGGCTAAACgTTTCTGAAATGTGCgtcttttttttatacaagccttttaataaagctatttttaccttcgcattgaaaatgccggaaggttatgttttgatcggcgtgtatttatttatttatttgtatgcgtgttattcgcaaaactcaaaaagtattgaaccgaatcgcatgaaattttttattatccggggaccagttgattagattttgggatcgatcgggtcaaaggtcaaggtcaaaggtcatgaacaggtcaaaatctttcgcagaactcaaaaagtattgaaccgaatcgcatgaaatttggtgggatgattgtttattatcaggggaccagttgattagattttgggatcgatcgggtcaaaggtcatgaacaggtcaaaatgttcttgaatcgcatgaaatttggtgggatgattggttattatccgggggccatttgattagattttgggatcaatcgggtcaaaggtcaaggtcatggaaaggtcaaactttttttaccttagcacgatacatttttgtccaattggcatgcaactaatgcaacatgttcataattcaatgcccaatcttgtgatatgcgaaggtatgcgctctaccgagtgcccattctagttctggtcatgttatttgtcttgtaaccctatatttacagtttttaatactggttaaTTTGTAGTTTCCACCCTGGGCTTGTTTCACACTAACCAGACCTCCTGGAGACATATTTAAATCTGGATTAGAGCTCAGTAAAGGTTATTGTTACACACTGGCACACTGACCAGATCTGGTGTCTGAGCAGCTTTGTGTATGATAATACTATTTCAATGCTTTCCCCCCCTCTGCTGACTCTCAGGTATCACAGCCTCTATCTGAGAGCCAAAGGTAATGTGTTCAAGAATAAGCGCATCCTCATGGAACACATCCACAAGTTGAAGGCAGACAAGGCTCGCAAGAAGCTCCTCTCGTAAGTTTGGACCCAGCTTCAGTTGTATTTAGTTTGTTTAGAAAAGGGGCAGTTCATCCTGAGAGCGGGTTTGAGTCTGGCACTTTTTCTTTCTAGTCCATAACATGGTTTCCCATGTTCGAGAGAAATAGTTGATAAGTATATCTCGTAATCATTACTTGAAGGTTAACTCTTGCTCTACTCTCCATTGTGTGTTGGTGCGTTTACGTACACTGTAAAAGCTTTCACATGGTTACTTCAGAGAAAAATGGTTTTTATCTAGCGCTATGTTGTCTTTATTGTCAGGTGGATTACTCCAGTCCACTGAAAACGCAACGACCAGAACAATCCTAACTCGGCATATATTTGAAACCAGTGCGCATGCATTGGATTTGTTTTTGGCTGCACATGATAACACCGGTCTGCCTCTCCTACAGCGATCAGGCCGAGGCTCGGCGCACAAAGACAAAGGAGGCCCGCAAGcGCAGAGAGGAGCGCCTCCTGGTCAAGAAGGAGGAGTTCATCAAGACCCTGGCCTTGGAGGAGGAGATGTCCAAGATGCTCAGGCTCCAGAAGAGGCTGGCCTCCAGCGTCCTGCGCTGCGGCAAGAAGAAGGTCTGGCTGGACCCCAACGAGACGAACGAGATCGCCAACgCCAACTCACGTAATCAGCAGGTCCGTAAATTGGTGAAGGATGGTCTCATCATTCGCAAACCTGTAACTGTCCACTCCCGCGCCCGCTGCCGCAAGAACACACTGGCACGTCGCAAGGGAAGACACATGGGAGTTGGTGAGAGAAAGGGTACAGCCAACGCTCGTATGCCAGAGAAGTTATGCTGGATGCGCcGCATGCGGATCCTGCGCCGTCTGCTGCGTCGCTACAGGGAGGCCAAAAAGATCGACAGGCACATGTATCACAGCCTCTATCTGAGAGCCAAAGGTAATGTGTTCAAGAATAAGCGCATCCTCATGGAACACATCCACAAGTTGAAGGCAGACAAGGCTCGCAAGAAGCTCCTCTCCGATCAGGCCGAGGCTCGGCGCACAAAGACAAAGGAGGCCCGCAAGcGCAGAGAGGAGCGCCTCCTGGTCAAGAAGGAGGAGTTCATCAAGACCCTGGCCTTGGAGGAGGAGATGTCCAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01280	Ribosomal_L19e	Ribosomal protein L19e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000196	Domain	Large ribosomal subunit protein eL19 domain	Interproscan
IPR015972	Homologous_superfamily	Large ribosomal subunit protein eL19, domain 1	Interproscan
IPR023638	Conserved_site	Large ribosomal subunit protein eL19, conserved site	Interproscan
IPR033935	Domain	Large ribosomal subunit protein eL19, eukaryotic	Interproscan
IPR035970	Homologous_superfamily	Large ribosomal subunit protein eL19 superfamily	Interproscan
IPR039547	Family	Large ribosomal subunit protein eL19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10722	60S RIBOSOMAL PROTEIN L19	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-