Gene detail

Detailed information of HS20410 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20410	COPROPORPHYRINIGEN III OXIDASE	chr23	13084957	13088026	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20410

ATGATTCAACACACGCTGCGCGCGAGCCGACGCGCCGCCTCTCCTGCTCTGCGCTGCTTCTCTGAGACTTCCGGTGGAGAAATCACAGAGGAGGATGGATGTGAACGGACAGGCTCTCCATGTCCCACAAAGCAGGCGTCCCTCTATGTGCACGTGAGCTGGCATAACAACAAAAATACAGATGTGTAATGTAATgTATAGCAAATACTAGAGCGTTTGCCCAAGCATGTCAGTCACCTTaCTCCTCTCTTCCTCTTCTTCAGTGGCCATACTGCCTCAGGCGGTGCTCCTACTGCAACTTTAACAAGTACATATCCAGAGAGGACAACGACCACATCATGACTGAGTGCCTTCAGCGGGAGACTGAGACGTTGCTGCAGCTCAGTCAGGTCTCCTGGTACGGGGATTGTCTTTCTTCCACGTGAAATCgGCCTTCAGCaCGAGCCTCCACCCACTCCTCGTTTTTTTATTTTCTCCCCGCAGCATCACCTCAGTGTTTTTTGGAGGTGGGACTCCGAGCCTGGCTCACCCCTCCACCATTGCTGCTGTCCTCCAAACTGTTTCACGCCGGGCGTATCTCTCGGATAAAGCGGAGGTCACGCTGGAGGTCAACCCTACTCCTGTAGGAAAGTCAAAGTTAGAGGACTATTGCCGTGCAGGGGTGAACCGTTTCTCCATCGGGGTCCAGGTGAATATATGATCGATAGAAGACTGcTGACTAGATTATGAACCGTGTAGTTGCACATATCACATGTTCAATCCTTCAGTCTTTGCAGGATGAGGATTTGAAAATTCTGGGAAGAGACCACAGCTCTCATCAGGCTTTGCTAACTGTCGAAGAGGCCAGGAGGCTGTGCCCCGGGAGGGTGTCGGTGGATGTCATGTTTGGCCGGCCCAAACAGAGCGTTGAATCCTGGGAGGACGAGTTGTCCGAGCTGTTGAAGGTGTGCGATGACCACGTGTCTCTGTACCAGCTGACGTTGGAGCGAGGCACCCAGCTGTTCAAACAGGTGCTCGCAGGAGAGGTGACCGTGCCCACTGAAGACGTGACAGCGGAGATGTACCAGTGTGCGCGGAGGACTCTCCACCAGCACGGCCTCCTGCAGTATGAGGTCTCTAACTTCGCAAGACATGTAAGTCCTCAGCAGAGGGACAGCTCACGCATCGGCTGAGAGGGCTTTATGTAAGGAGTAAGGAGAAAACATGCAGTACAATAATGTGTGTAAGAAAAAAATAACTTAAGAcaattcaattcaattcagtttatttgtatagcccaatttcacaaattacaaatttgtctcggagtgctttacaatctgtacacatagacatccctgccccaaaacctcacatcggaccaggaaaaactcccaaataacccttcagggggaaaaaaagggaagaaaccttcaggagagcaacagaggaggatccctctccaggatggacagatgcaatagatgtaatgtgtacagaaggacagatttagagttaaaatacattcaatgaatgtgacagagtgtatgaataAGACAATACAGTGTAGATGAAAGAATGGAGAATATCAGTTAAAATCTAATGATGGATTTTaggaaaacttaagatttctctctctctctctatatatatatatacatatacatttatatatatatatatacatttctatttatgtatttatatattaattaataataataaatagttaaaggcttgcttcttaatcaaaacatttTGAGAGATACTTTTCTGTTTTGTTTTTGGTGAGACGTCACCAACAACAAGGCAGATGTCATGATAACGCTTCACTGTGTCACGCAGAAGGCAGCGAGTCACCACAACACGAGCTACTGGAAGGGAAGACAGTACATCGGCGTCGGCCCAGGTGAGCTCTTACCTcGACTCGAGGCCCTGATCAGTGGATATCGTACGAAAAGTTTAGTTTTAACATGTTGCTCTGTGGCAGGAGCACACGGGCGCTTTGTTCCTCTGGGGGAGGGGGGGGTCCATCGGGAGGCGCGGACCCAGACCCTGGAGCCTGACGTCTGGATCCGTGAAGTCCGGCAGAGAGGACATGGCACACGTAGGCGGATTCAACTCGGCCATCTTGAACTGTGAGCTGTTGCACGTACAGGCACAACACAGGTGTCCCCCAATGGTCGCTGTACATGGGCTTGTTCTTCCAGACATTCTGTTCCTGTGAAAAACGCCATCATCAGTCTCGACGTACTCACGCCGCGCTGTCCTTGTCAACATCGAAGTCTAGTCACCGAGAAGTTCTCCGATGAAAGTTGTTTCTTTTTTACAGATTGGAGGAGGTGTTGGTTATGGGAATGAGAATGAACGAAGGCATTAATCACGAGGTGAGGTTTTTACCTGCATGACATAACTGAACATAATTATTTACAGTGTctGTGTGATCTTTTCTGTCGGTGCAGCATTCAGCACTTCTTGGTACTTGTGGTAATGTTGATCACGTGATGTTATTTCACAGCATTGGGAGATGTTTAGCCCTCAACTGGGTCTCCGGGAAGTCTTTGGCTCATCCAGAGACGTCCAGGAGTTGCTCCAGAGTGGACAACTCCTTCTTGATGACAGGTGACTGACATTTTACAATACATTTCTAATAATTATAAAAGAGTTCTCACTTATGTAAAGATACTTATTTGCTTTATTTAAATTAATAAAATTGTGGAAATTGCATGTTATAATTCCCCAAAGCCCAAAGTGGATGTAATCATACAGCTCATTGTACTTATCAGCATTCTTAAACTAATATAAAACAAAGAAAGGCATCACAGTTGAGAAGCTGGTATCGGGGATTATTTGGCATTTTTCCTTTTAAAAACCATAATTACTTGATTAATCAACTAAAAGTTGTTCTTATCATTTCTTCTCTCCTTTCCTTTATATCAGAGGTTTGCGCTGCTCCTGGGATGGACTGGTCTTACTGGACAGCATACTGCCAGCTCTACTGGTGGAACTGGAAAGACAAATCAGTCCGAGGCTACAAAGGGACATTCACCACACTGATGGACGAACAGAAAGCCGAACCTCCAGCCCTCGAATGATTCAACACACGCTGCGCGCGAGCCGACGCGCCGCCTCTCCTGCTCTGCGCTGCTTCTCTGAGACTTCCGGTGGAGAAATCACAGAGGAGGATGGATGTGAACGGACAGGCTCTCCATGTCCCACAAAGCAGGCGTCCCTCTATGTGCACTGGCCATACTGCCTCAGGCGGTGCTCCTACTGCAACTTTAACAAGTACATATCCAGAGAGGACAACGACCACATCATGACTGAGTGCCTTCAGCGGGAGACTGAGACGTTGCTGCAGCTCAGTCAGGTCTCCTGCATCACCTCAGTGTTTTTTGGAGGTGGGACTCCGAGCCTGGCTCACCCCTCCACCATTGCTGCTGTCCTCCAAACTGTTTCACGCCGGGCGTATCTCTCGGATAAAGCGGAGGTCACGCTGGAGGTCAACCCTACTCCTGTAGGAAAGTCAAAGTTAGAGGACTATTGCCGTGCAGGGGTGAACCGTTTCTCCATCGGGGTCCAGTCTTTGCAGGATGAGGATTTGAAAATTCTGGGAAGAGACCACAGCTCTCATCAGGCTTTGCTAACTGTCGAAGAGGCCAGGAGGCTGTGCCCCGGGAGGGTGTCGGTGGATGTCATGTTTGGCCGGCCCAAACAGAGCGTTGAATCCTGGGAGGACGAGTTGTCCGAGCTGTTGAAGGTGTGCGATGACCACGTGTCTCTGTACCAGCTGACGTTGGAGCGAGGCACCCAGCTGTTCAAACAGGTGCTCGCAGGAGAGGTGACCGTGCCCACTGAAGACGTGACAGCGGAGATGTACCAGTGTGCGCGGAGGACTCTCCACCAGCACGGCCTCCTGCAGTATGAGGTCTCTAACTTCGCAAGACATAAGGCAGCGAGTCACCACAACACGAGCTACTGGAAGGGAAGACAGTACATCGGCGTCGGCCCAGGAGCACACGGGCGCTTTGTTCCTCTGGGGGAGGGGGGGGTCCATCGGGAGGCGCGGACCCAGACCCTGGAGCCTGACGTCTGGATCCGTGAAGTCCGGCAGAGAGGACATGGCACACGTAGGCGGATTCAACTCGGCCATCTTGAACTATTGGAGGAGGTGTTGGTTATGGGAATGAGAATGAACGAAGGCATTAATCACGAGCATTGGGAGATGTTTAGCCCTCAACTGGGTCTCCGGGAAGTCTTTGGCTCATCCAGAGACGTCCAGGAGTTGCTCCAGAGTGGACAACTCCTTCTTGATGACAGAGGTTTGCGCTGCTCCTGGGATGGACTGGTCTTACTGGACAGCATACTGCCAGCTCTACTGGTGGAACTGGAAAGACAAATCAGTCCGAGGCTACAAAGGGACATTCACCACACTGATGGACGAACAGAAAGCCGAACCTCCAGCCCTCGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF06969	HemN_C	HemN C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004559	Family	Heme chaperone HemW-like	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR010723	Domain	HemN, C-terminal	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR034505	Family	Anaerobic coproporphyrinogen-III oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13932	COPROPORPHYRINIGEN III OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004109	Molecular Function	coproporphyrinogen oxidase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006779	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-