Gene detail

Detailed information of HS20361 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20361	METALLOPROTEASE INHIBITOR	chr23	12213491	12219538	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20361

TCCTCGTTTATTTTTCAGCTCCGCACCTCTTTTTTTATTTTTATATATTTTTTATTTACACAGTTTTCCAAGATGACCTGGACGATGAACAGTTGTTTAGTGACTCTAGCCATCCTGTTTCTGTGGCGAGTGGAAGAAATCGCGGAAGCATGCAGCTGCTCCCCAGCGCATCCTCAGCAGGCGTTCTGCAACTCCGACGTCGGTAAGTTAACTCACGGATGCGATTAATGAATATAAAGCAACATTCGGTCTTAGTTCGCTTGAATATGTGATGTCGGGGATCATATCttTTTTTTTTTCACTAAGAAACTGTAGATGCTTAGAGGGGAAAATTCCCCTCGTCTCGTGTTTACAATTACAGGCGACAGGAGGGTGGAATTTTCtGTCtCAATCTTTCTTTCCACTGCCCTCCTCTTTTCCCTCCTCTATAATCATCTGGTGATGGTCTTGAGTCATGATAATGACAGAAGTGTAACTTACTTTATTTAATTTGCCTACATGTTTTATTATATAGTAATGTAACTAAGCACATTCACCTAaAAACTATATTCAAGTTTGAGTATTTCATTGTTATGCTACTTTATACTGCATCTCAAATgTATACTTTTGTCTGgGAGCTATGTAACATACCCTTcCTCTCCAGTGAAAACATAGTCTCTTTGGATGAGATTATTTTGAATGTTTGTGATAAACTGAAGGGGATCCTGTCTGTGGTTAATGGTCCTACTTAAAggatcagctggaaaatgcatcgtcacggggctgtttttctacacatgaaaagttaactttgaagtaatatgtagttctcacaggatacttcacatctatatgattatctaatagaatatgatgtattgctgtagattacactaccataactggttatgaaCCGATTACCATATGGTcATCGGttcataatcaatttatTTATATAGATATAATGTGCACAACCTTAAACCCCTACAGCAGTAAAGTGCCACAAACATCAGAAATAATAGTCAAAGGAGTCAAACACTGAcGGGGAATTTTAATGCAGAATGACAGTGTTTACTTTTCATAGAGcGTTTCTGTtATGATTTGTTGCTACATaaAAAAAAAcCGTAACGTACAATGTGCTGATAATACTTGCTTTTAAATGCAGGGCTTAATAAAGCATCTGAATGCCTCTTCCACCACTGAGTATCAtTGAaAcaTTTTTTACACGATTGCTTGCAAAAtCTGTTTTTCTACATTgTGGAATGTTTGTGTGACAACGAAACAGCTCCTACATGCTAGTATGTATTTAATTCTGGTGGGTAAACTGGATCAAGTAATGCTCAACAGGATCATGCAACATAAATTGTCATCCTCAACTCTGGAGTTGAGAGGTTTATGGTGCACTTGCTCAATGACTAGATATCCATTTAATTAGCGCTTTCTCAAAGGTTCCCTCTTGTATGTTTTGTCTATTACAAAATGCTGCTTGTTGCTGCCTTCAGCACAAGCCGAAGCGAAGGAGTCTCTACAGTGACCAGCTTGTGCAGCTATTTAAATTGGTGGTTTGCcGAGGGTCTTTTTTCTCGGTTGTGAGCCGGCTGAATGTGTGTGGTCTGTATACAGACGCTGACTTACTCAAAGGTTTCTCTTTACCAATGGATTCCACTGCTTTGGAGGGTGAATAAACCACATTATCCTTCCTGCTgGAGaGTTTACTGTAAAGGAAAGTCCGGATTTATCAGAAGTTCCTCTATCGATGAGAAAAATcTgACTCTGAGACAGATAGCTCATGAAAGACACCAAGAAAGTGTCAAGGAACTTGGCTGAGGATGACATTTTACCTGAGTTgAACTATTTCTTGTTTTCCAATTATTTTGGTCTAtTTTTTGGACTGTAGGCGACTGGGATTTGTTACGATACATCAAAGTTATTGGCTTGTAAAGGAGTGTCTACTTGCAATTTACAACTTGCCAAGTTTATATTTCATTTAGCAATATTTGGGAAGACAAAAGGCTTTCTGCCAGGTAATAGTAGTTGTAGTGGATGCCTGAATCGGGACTGAAGATACTGTATACGTGTGTGTGTATATATACACATACAGTATCTGTAATGTGCCTAGGTCGGGTGCAAACTACATTTTTGGTTTCTGTCACCTGGGTGCTAATAACATTTGCCATACAATAATGCGTATGGTATTTCCATGCTGTTACTGCACAGTAAGACATTGTCTTGAAGAACCAGACtcACTTTCTGACAGTTTACTGAAGTGAAAGTGTCACTTAAGTTGCACAGACGTAGGGTCATCGCTGTCTGTGGAAAATGACTCGAGTAGCGTATCTTACTCTGTCTCTTTAAAAATGGGGAATAAAGGTCAAAGTGGGCTGAAACTCAGCATTTGTGTAAGATCATTGCATCATTTGGCCCCTTGCAACGTCCGTTTTGAAGATCTCTTGCACTTCATAATGTATTCGTGTTGTGTGAGGCAACATCAAGATGCATTGAAGAATAGAGGTCAAAGTAATTGGGGCAGTTTCCACCTCTGCTCCTATAGTTGTGCCTCAGCTTTCTATATTTTGCTAGGGCCTAACTTATTTCTCTCTCAACTGGcGTTAACAAACAATTTACCAGATCAGCTATTGATATAAACATGTCGTTCCATTTGTCTTGTTAAAAACAGACGGTGCAGGAACCAAAAACAAATCTCCCCTCATAAATTGAAATCCATCCCTTGGGTCTCTGGCTGAGGCAGAGGAATGCTGGGCGGTCATATGCTGCGCTCGTTATGTGTTTATTTCCATTCTCTGCCATTGTGGCGTTTACCTGTGCCAATTTTGTGAACAAGAAAATTACAAATTGTTAACTGATCTTTTAAGGAAGCCGGTTTTCGAACACGAGTTCCGGTATAAACACAGACCTGCGCTGCAATCTGTGTCAACAGAGATTCACTGTGTAGCTGTTTTGAACTCTCAGCATCACCGGTAATAATGCACTGAACGATCTGTTCATTTAGTAACCACACAAATGAATAaTGGTGGATAAAAGACCATTTAATCTTTAAAAAATAAATTCTGGAAAGGAGTCAATTTGAATCTGTAGTCTCTTGTCTGACCACTTTGTGGCCTCTCagAGTTACATGGATGTGCAGGCCCTGCAATTACATGACATGCTTTTGCTTTCTTCTCTTTTCCTCTTGGGTTTAAAGCGCTCCAATGACCACAATACTACACACAAAATAATGTGTTTTATTGTTTAACTGGTAAATTCGATGGTTGCAAGTTTTCTGTAGCCTATGATTATTTTAGGGCTTTGTCAGCCTGTTCCAGAAAAAAATAAATCATGTTTTGTGAGACTTAGACTCTAGATCAGTCCAGGTTATTATGTTTAAGTTACTTCGAAAGAAACGCACTACTAGTGCTTCGGTGCAATGGGCACCAGAGATTGTTTTGGATTTGACTGATTATTCTTCATAATGTTTTGAAGAAAGTGTCTATTTTTAGCATGTTGAATGCAATTTAAAGAGATGACCTGCACCCTCTCAAAGTTGTTTTCGATGCCCAAGTGCTTGAATGATATACAGTACATCATTCACTTAATGTGTAAATACTGCGCATATTTTCACCTGCCCTACTTTACACTAGTAGCAGTGATCTGTGTGTGTGATCCTGCACACTCAGGTGACGGGCATTACTCCTAATCCTGTTTACCAACGTGCTCAGTGTAGTGTTTGTGATCTGTAAACCATCTTCCCTGGTGGAGAAGATCACTGGTGCAGTTTGTCATTCTGAATCGTGCCTGTAGTTTGTACAGCTTGTCCGTCAGTCGGGATATGTGCCGCTTCACAGCAGCTCTGCAGCATGCACAAGTCAGTATTTTGCACATTTTCCGAGCTACAAACTAAATGCTCCCTCTCTCTCAGTATTGCTTGGTCCTCTCCCCGTATACACGTCTACCTCTGCAGTGTCACTGCTATTCCTGTCTGTGCTCTCTGTTCCCTTGCTTGGAGAATGCAGCCATCCTCATCACTCCATCACTCTCTCCATCTGTGCACATACTCTTCCTTTTTCCTGTTCTTTCTTTTTATGGGTCGACTCTTTAGACCCTTAAAAGGAGATTTTCTGTAAGCCTTTATTGTCATCAAATTAGGGCACATGTGGCTCGCAGCTTAATACCTTCGTCATATAAAAAGCAAATCAAGTCTTCCTCATATTTGGTAAGCAAGCTGGTGATGGTCTTATGTCTGTAGCTGCCACCTTGAGAAAGCAAGGACTTAAACTGGGACTTTAGGGAGAACATCTGGTTAACATTAACCATGTCGCTAGTCTCCTCCGCTTAAAAGCTTGATTTGTAATATGATTTTGTAAGTGTCGTAGTCATGAGACCGTGCGGTGATCATTGCATAACACATGTAATAAACAAGGTATTTAGCTATGATGGGCTTATGATCAATGCGATACTCTATGTCAACACTTGGATTCACATGACAGAAGCAGTGGTTGTGAAACTCATGAGTCGTATATTTGTGTTTTTAATACTCTGTATTTGAGCTCAAAGGCTCATCGGTATGGCTCTGAAGATATTTTTCCACTTCAACTGTTTTATTTCTTCCCCGTCCAAACCTCTCTGAATCTGGAAGCGGGAACCTCAGAGCGAGAGAGGGAAGGGAAAAATGGGTGATTTGCATGTCAGCACCTCTAACCAGGCAGAGAGGCCTGCGGGCGAAGGGGAGCATTCTCGTTCAGCTTTTTCAAAGATCGCTGACTGGCTTCCTCATGCCAGCCCAGGAGCTGGGAACCGGCAGCACACATTTCTCCCTCTGATTGCATCTGATGAAACACTCATGTTGCCTCTGTCTTCCCACTACCTGGCACATGAAaACGCCTCGGATCCAAGCCACAGCAATGTGTTGTTGCCGACTCCAGCATGCCAAACCTGGGCAGGGCCCAGATCAGAGGCAGACGGGCCCACAACCTGTTTGTTTTTTACATGACAATGATGTTTGACTTTGAAACGTTGTCTTCAAATCCAATGAATGTACtttttttttttttttttttttttttttttGTCCCTCCAGTTATCAGGGCAAAGATAGTTGGAAAGCAGGTGGTTGACGTTGGCAATGACATCTACGGGAACCCCGTCAAGCGTTTCAAGTATGACGTCAAACAAATCAAGGTAGGTTGGATAAAGCTAAAATGTTCACGTCATACACTTATTTGCAATATTAATCTAAATGTTCTGTTCTCTGCTTGAATTGTCAGTCGTTCAAAGGTCCCACCCGGGATATTGATGCCATCTACACAGCTCCCACCTCTGCAGTGTGTGGCGTCTCTCTGGAACATAACTGCAAGGAGTATCTAATCACAGGTACAACTTTAACCTCATTTAAAATGATAAAATATACCGATTTATTCTGACTATGTTTTCACATTAGCTTTCATGTCACCGAATGCACTTTTCTTCCTCTTTAGGCAAACTGGAAGCTGATGGGAAGATGCACATCACCCTGTGTGACTTCATTGAGCCCTGGGAGACCCTGAGTGCCACACAGAAGAAGAGCCTGACTCAGCGCTATGAAATGGGCTGTGAATGCAAGGTAGAAAATGACTGCAAGTAATCTTGAAAGATGCATTGTTTGTGtgacatctattgcttctgtccatccggggagagagaacctcctctgttgctctcctgaaggtgtctcctgaagggttgtttctatttttttgaagtttttccctgatctgctgtggggtcctgggacagggatgtctgtacagattgtaaagcccgctgaggcaaatttgtgatattgggctgtataaaataaactgaattgaagtcaaattCCTGACCTTTGTCTCTTCTCAGATCACCCGCTGCACAGCCATCCCCTGCATGATCAGCAGCCCGGCGGAGTGCCTGTGGACGGACTGGGTGATTGAGAAGATGGTCAATGGAGGGCAGGCCAAACACTTTGCgTGTATCAAGAGGAGTGATGACTCTTGTGCCTGGTACAGAGGGGCAGCACTGCCTAAAAAGGATTTCCTGGACATCGAAGATCCTTCCTCGTTTATTTTTCAGCTCCGCACCTCTTTTTTTATTTTTATATATTTTTTATTTACACAGTTTTCCAAGATGACCTGGACGATGAACAGTTGTTTAGTGACTCTAGCCATCCTGTTTCTGTGGCGAGTGGAAGAAATCGCGGAAGCATGCAGCTGCTCCCCAGCGCATCCTCAGCAGGCGTTCTGCAACTCCGACGTCGTTATCAGGGCAAAGATAGTTGGAAAGCAGGTGGTTGACGTTGGCAATGACATCTACGGGAACCCCGTCAAGCGTTTCAAGTATGACGTCAAACAAATCAAGTCGTTCAAAGGTCCCACCCGGGATATTGATGCCATCTACACAGCTCCCACCTCTGCAGTGTGTGGCGTCTCTCTGGAACATAACTGCAAGGAGTATCTAATCACAGGCAAACTGGAAGCTGATGGGAAGATGCACATCACCCTGTGTGACTTCATTGAGCCCTGGGAGACCCTGAGTGCCACACAGAAGAAGAGCCTGACTCAGCGCTATGAAATGGGCTGTGAATGCAAGATCACCCGCTGCACAGCCATCCCCTGCATGATCAGCAGCCCGGCGGAGTGCCTGTGGACGGACTGGGTGATTGAGAAGATGGTCAATGGAGGGCAGGCCAAACACTTTGCgTGTATCAAGAGGAGTGATGACTCTTGTGCCTGGTACAGAGGGGCAGCACTGCCTAAAAAGGATTTCCTGGACATCGAAGATCCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00965	TIMP	Tissue inhibitor of metalloproteinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001134	Domain	Netrin domain	Interproscan
IPR001820	Family	Protease inhibitor I35 (TIMP)	Interproscan
IPR008993	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR027465	Homologous_superfamily	Proteinase inhibitor I35b (TIMP), C-terminal	Interproscan
IPR030490	Conserved_site	Tissue inhibitor of metalloproteinase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11844	METALLOPROTEASE INHIBITOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002020	Molecular Function	protease binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008191	Molecular Function	metalloendopeptidase inhibitor activity	Interproscan
GO:0009725	Biological Process	response to hormone	Interproscan
GO:0010033	Biological Process	obsolete response to organic substance	Interproscan
GO:0010951	Biological Process	negative regulation of endopeptidase activity	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0034097	Biological Process	response to cytokine	Interproscan
GO:0051045	Biological Process	negative regulation of membrane protein ectodomain proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-