Gene detail

Detailed information of HS20320 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20320	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	chr23	11264965	11267373	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20320

CAGGCTAAATACCTTGTGCAGATCATCGTGATGGGGGTGCAGGTGGTGGGACGTGCGTTTGCTCGCGCTTTACAGCAAGAATTTGCAGGTATGATCCAAATGTATTTAATATTACTGTACTCgGTTTTCCTTTTGCAGTTGTTAAGACACAACACTGGTGGACACGTGTGTGGAACCACCATGCTAAACCAAAACAAATGATCTGCTTTACACTTTGTTTAACACACTTTTCTTTGCAAATAAATACATAACGTTATCTACATTTCGtgtttctgatacagttgggtattgagaacaaacgcattgtatgtgtgttcattgcttataactgcatacttcaaaggaaaatgacagtctgtccagataataaggtttaatgcttCGCACAgCAATttcgatcttctgtaGTGCAGTTGTCTTGTAGAAAGAGCTACATGTCTCGCGTTTTTCTGTAAAATTGCTCCAGAGAGAGGTTTCACATGCATTTATGTTACTTACtGAACTGAAGTTGTGAGTATTTGTTGTTTCTCTCgCAGCCAGTAAAGCAGCGGCGCAGGCCCGGGGCAGTGCCGGGCAGCACTCTGCTGCAGCCTCCAGCATCGCTGGGATGAGcCTGCAAGAGGCGCAGCAGATCCTCAACATCACCACACTCACTCCAGAGGAGATTCAGAAGGTacacacacacacacacacacacacacctttaagagttgtgtaactaacaaagTGTTGGTACTAGGCTACAGAGCCATCAAGCCTGTTTGCCAGTCATTACAGATtTTCTGGCCGTATCCAAATCACACGTCACGTTTACAGGATTTCCTTCGTTGTAGCGTTTGTGTGTTACTCTGTCACTATGAGTGGAGACATTAGTTTCTGTTATTACCTAAACGTATTCGTCAGAACTGATTCAGACCGCTGCAGGATACCCTAGCATCTTTGTAATATAAACAACTATCCCAACCTAAAATCTACCTTTTGATGGAAACACTCGACGCCATTTGCCCTTCAAAGATGGCCCGGTCGTAGAATAGTGTTACAGGCAGTCATATCTTTAaCAACTGATGTGGCTAAACCGAGCTACGAAGTACATGTACAAGATGAGTTAACGTCAGGAACACAGTTTTTAATAAACGTATTGTATAAATAAAGTATATTGTCTTTGTTTATTTGAACCATTCATCAACATTATCAAATGTTTCTTTACCTTTgTATGTTCTAACAATGATCATAAAATGTCTcGAGTGTCTCTGCTGGCGTTCTGATAAAAAGTGTTTATCTCTTCCAGAACTACGAGCACCTTTTTAAAGTCAATGACAAGACGGTGGGCGGTTCGTTTTACGTCCAATCAAAAGTAAGTATTCaGTTTCTTAAAATGCAACACAATGACTTTCACATGTgtCGTAGAGTGGACAGTTATGGCAATTTATCATTTAAAGCAGAACCCATCATTGCCCACTAATCATTTTTAAGCTCACTAAATTAcAAAAACGGCATCAGAACATATCAAACACACATGGTACAAACATGTGGTACAACAcaGCTAAACACACTCttatgaagtggggtagtatgaagtacttatttggaggagcagacaggagtaccggcacaggagcagagtatagtaactaaaggtattttagccacctaaaagaattttaaaaatctattgatttatgtgtttgctaaattaagaatatttttggaagattaactggccgttcaacagccttttaccaaagcagttataaccatctatgctctcgACCTCAcGTCTCCACGTCCAAACCGTCgTTTAACACATCAAATATTGTGAAGTAAGATTCTCCGACACCGATTTTAAATTCCAATAGCAACTTTTATTGAAGAGTTAAGGTTAAACTTCATTGTTTCTTATGTGCAATCTTTCTGACATGACcACATGTAAGCCTGCAGTCCAGGGCACCAAACTATAAGAAGTTGAATGTTGACaGTTTTGAAAACTATTTTAATGATTGACTGATACTCTCCCAGTCTCCTAAGGAAATTGAAACTTTGCGTTCATATCTTTAAATTATTCCTGATCATTTTAGTGTTGCTGTGTACTCCTATATCAAAAATAATTAACACATTTTTGCTGTTTTAACAAATCAATTTCCAAGAGAAAATGAATGACAAAACTTAAAATAAATTATGCCTCATGTGAATCTGTGTGTGTTtgatgatgatgatgatgTTACTGTTTTTTTaATCTCTCGCTCACTCCTTTCTGCTCTGAGGGAACCAAGGTGTTAATTGTTTATTTTCTGTGTTTCCTCTTTCATGCGTCGTTGTTGTTCTCGGTTTCAGGTGTTTCGAGCTAAAGAGCGTCTCGATGAGGAACTCAGTATTCAGACACAAGACAAGCAGCAGTCGCAGAAGGAAACACAGGCTAAATACCTTGTGCAGATCATCGTGATGGGGGTGCAGGTGGTGGGACGTGCGTTTGCTCGCGCTTTACAGCAAGAATTTGCAGCCAGTAAAGCAGCGGCGCAGGCCCGGGGCAGTGCCGGGCAGCACTCTGCTGCAGCCTCCAGCATCGCTGGGATGAGcCTGCAAGAGGCGCAGCAGATCCTCAACATCACCACACTCACTCCAGAGGAGATTCAGAAGAACTACGAGCACCTTTTTAAAGTCAATGACAAGACGGTGGGCGGTTCGTTTTACGTCCAATCAAAAGTGTTTCGAGCTAAAGAGCGTCTCGATGAGGAACTCAGTATTCAGACACAAGACAAGCAGCAGTCGCAGAAGGAAACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03656	Pam16	Pam16	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005341	Family	Mitochondrial import inner membrane translocase subunit Tim16	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12388	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005744	Cellular Component	TIM23 mitochondrial import inner membrane translocase complex	Interproscan
GO:0030150	Biological Process	protein import into mitochondrial matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-