Gene detail

Detailed information of HS20271 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20271	E3 SUMO-PROTEIN LIGASE CBX4	chr23	10108829	10114666	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20271

ATGGAGCTCCCTGCCGCCGGAGAGCACGTCTTTGCGGTGGAGGGCATCGAAAAGAAGCGCATCCGCAAGGTAGGAGAGGAGGGCGCGTTTGCAAAACGTTGAAATGTTGCGTTTAACACGAGCCTCACCATATTTCTCTTCTCCACCATCACAGGGCAAGATCGAGTACCTGGTCAAGTGGCGAGGCTGGTCTCCGAAGTAAGTCCTCATGCAATTATCACTATCTTTACTATCTTCACTGCAATAAAAACAAGCGTAATATTGCATTAAAATCGAGTGTTGTTACCtaaaaatgccatttaccaagggcgtgcgcgcacagagcgtgtggttgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaggagagcgcGGTCGGTATGTGCTTCAGTGTATCCGCGGATGCCTTCACTAATTTATGCGAGGGAAGGGGGGTAGGCACAGCCATGTAATCCCGTTTTAATTATTTCTGCTCTGCCAGCGAATTTACGAGACAGTGGTGCTAAAATGGCCGACTGTATGTTGGTGCTGGAGCACCGTTTGCAATAGCACATAGAGCCAATTCCTCTTCTGACATGTTTGCTCTGCGGTTGCGTGTCCTGAAGGTGGATCTGCTGTCGCGGGAATGTGACTAATAGTCGTTTCCCAAATTCAATTGAGAGCGACATCATGTGGATGTTGCAGCGGACGCCGGCCTTACCTGTCCACTCCACAccgactgcacagtcacgctgaagatgtgggaatgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgacggcctgtgtgtcggttttgaaaaaagGACCACGTGACAGCTGGCTGACAGTTGCTCTCTCCTCTCTACAGATACAACACATGGGAGCCGGAGGAAAACATCCTTGACCCGCGCCTCCTCGTCGCGTTTCAACACAGGTGAGCGATGTGGACTTAGGACAGGCCGCAGCGCAGGCTCCAGCTCAGCCCGCTCATACCATATATGGGCATGGGAGGAGGGGCGCTCCAGTAACTCTAGCACTGATCCCCTCCCCACAGGACTGTCTGTCTCCTGGGGGAAAGGCTGTGGGATGTGGAAGTGAGAATTCCTAAATCATACTGATGGGAAGATCGGACAAGCCGAAATATATGCATGGATGTGTGGACGTAAATTGTAACAAATTATCATCTTGTTATGGGATTTTCCGTCTCAACGGCATGCCATGACAGAAACCTGAAGTAGCTCTGTTTTGTTTGTTTTTTGGCTCGAAGGTGCACGATGGACCGTTGGGAATAGGAAAGCAATGCTCCCCATGTGGATTAAATAACAACTATTTGGTTATAATCGTATATTTACTAGTTTGAAACTGTAGAGATTAAGCAGGACAGGTGCTGAATTAGCAGCTGCACTCCAGAGCCTGGCTGTTTTCATTGAGGGTGCAGGACACAAGTGCAGCAGTTTGTTGTGGTTTCATGTTCGGGGGCCAAGCTGCTGCCTGGTGGGATTCGACTCTCTATACCAATCTGAGATCTGCTCACGGCGGATTTCATTTAACCCGAAAGAAAAGCGTTCAACGACACTAGCATTGAGGCATCAGATGCAACGGCTGCCTTTATTTTCCGATTCAATGTTGTGGAAACTGAATAGCTTACCTTGGATGCATTAATCATCAACCTGCTTTCCATCGTGGGTCAGAAGTAGGCTTAATAGAGGCCTGTAGGTAATCAGAAAAACATCAATGTCAATCTCAGAGGTTGAGATGCTGATGAATACAAATGCTGCTGTCATGTTGGCCCTGTGGCGCGTGCACAGCAACATCTTGTCTGGGTTGCTGGACTTATGAGGCCCGTGAGATTTATTCTCACTGTAGGCCACCAGGCCGCTTGTGGGACTGGGTAAAGACACGATGGCTGGGGAAAGGAATTCGCGTTTCTGAAAAGGCTAATTGACACTCAATGCTCTCCAGCGTTTCCAGTGTACGGCTCTCATATTCCCCCGCAGCCTGCTTGCCTGGCtgtgtgtgtgtgtgtgtgtctgGCTCTTCGCTGATGGTCATGGAGTGCTGCCTCTGCGCCGTGTGTGTGGATTCCTCTCTGCTCCCAGAGGATGGGGGAGGGGATCCGACAAGGGAGGCTGTAATTGCCAAATCTTCTGTGAATAGGGGTCACCCCGTTGGACGCTGTTTGAAATtGCACACATTATAGCATTAAAATGTAGACTGTTTATTGTGGCAATTTTCTGGCAGCTCTGATAGTTTGAACATCTGCAGCAAGAGGCCGACAATAGGCTGGCTTTACACATGCCTGGTGAAGCCTGTGAGCAGCCGGCCTTCACCCACCGCTGGTTATTTATGAGCCAATGATGAGTCAAGGTTTATATCAGGGAGTAATATTTCACAGACAACCCAAGTGTTCAGTCTAGTCAGTACAACAAAAACACGCTCTCTCCTCCCTCTGCAAGTTCCAAGAGATGTTTGTTATTCGTCAGTTATTCAGCCCACATTTTGAGTGGTGGTTTGGATGTTTTCAACAGCAGCCCGTATCCCAGAAGTTCGGTTGTATTTATCCCATTTCATCCCTCCTGACCCTAATTAGAGATTGAATGTAGAAGAAAGGGCGTGCTGCAGGAGGGAGGATGTTTGAAAGACAAGGGGAGATTTTCCCTGCTGTAGCCTTAATTGAATTTTTTCCAGGATAATGAGAATATGAAATGGGCCTATTACCATGGAGAGCTATGCAAATAAGGACCATAATGCTTTGCAGCAGGTCACACGTGGGTATTCATTAGTCCCCCAAAATCTAAATTTCACTTTTGACCTTGAGTAGGTGGAAGAAATGGAACAAATACTTCACACGTCAACCTTGTAATTTTCTTTATGATACAATTAGATTTTTTTATTATTCTGAAAGTGAAACACTGGCAGTTAAATGAGATGTTGTGTATAGAAGGTAAACATGGTGCCAGAAAACGTAATTACCTTTTTGTTTTCGCAGAGAGAGGCAAGAGCAGCTGTTGGGATATCGCAAACGGGGGCCAAAACCCAAACATCTTTTACTCCAGGTAATCATCCACTTCATCATTTACGAGTCATCACGGACATGATGGCTTCTGTAGAAATGTCTTGCTCTTCTAAGCCATCCTGTCAAGTTTCGCTCTGTTAGAGGCCAAAAGGGGGGGGGGGGGGGCTGTCAGGTGTTTAAGGGCTGCAGCCATCATGGTTGCGGTTATAAATAGATTTTTTGGAGAGGGATGGAGTAAAGGGTGAAGGAAGGATGGGGTCGGGTCCTACAGCTGGATTTGTCTGCTCACTCATCGTGAAACAGGGTTTGTTGCCTGAGGTGACGCAAGCGCCGCATGAGTGCACTCATTTTATCTGCATGTTCATTATTTTCTTATGCTAAATAGCTTTATGTGCGACAAACAGATGCACAGAGAGCGTATTATTGTACGGTCTCGTTTGGTCCAAGTGAATCTATCAGGAGAAGGGTTTCTTTCAAGTCCCTGTTGGCAAAAGATAAAAATAGATGGCTGAAAGTAGCACTTGTCTCGTGCTCTGACTATTTTACCTCTGTCCTTTACAATGTAATGATATATTTAGAGAGACTTGGAGCCAATTGTTATGCAGTGACACTCCTTAAGAGGCATTCCACATTGCCAGAGTCACACGTGGCcAGCAATCAGGAATAAAGCGTGACATGTCTGGTGGCACCTCTCTGACCTGAGGTCACAGCCAGAGCGTCTTGAGCGTTCCGCTGCAGTTCCCCTTTGACAGCCCGAAGGGTCAGCCTTGTACAGGAGGAGGGGGAGgGGACAAGATGGTGGGAGGGAGATTGTAAACTGAGCACGGATTGGATAGTATATTTCAATTTCCGAAAAGGCTTCAGCATCTTGTAAACTCAGCCCGTAGGTTTGCTTATTTTAGCTGCAGTTTGAACTCTGTTAAAAGGGGCATTAAACCTTACTCCATATGCACAGTTTTTGAAAACCATTGTTTAATGGCACCAGGGGGAGAAATAATCATAGTGATGACATGGGGCTTACCTAAGCTTTGCCTTGGAGACCACAACTGTATAACGTTTAACTGTGCATGGCAAAATAGTGGCATAGTGTTAAAAAGACATTTGCCTAAAGCGGGGATGGTAAAACACAGCGAGGTGAGTGTTGCATTATGGGGAATGcAGGATCTGGTCTCCATAGAGGTTCTTATATATACTTTGGCCTAAAAACAACGTTTTCTTTAAGACCCCACTAACAAGGGCAATACTTCGTTGGCTTATTGCTTTTAGTTATTACTTAAATACATCCCAGAATTACAATCCTCATTATTAATATTTGACTGATTATATTCTTGACTTCGATGCAAAATGTTTAACTAGGTGTCTTGTTTCTTTCTTCAAGGTACCCTCCTTTGCCAGAAGATCCTGTATCCCTGCAGGTTTcGAAGAATCATCTCAGGATGCAGAGGCTATCCTCAAGCCCGACCCCGTCCCGGTCCAGCGGCCCCAGCCTCAACAGTACCAGCTCAACAGCAAGAAGCACCATCAGTACCAGCCCAACAGCCAGGAGGTCCCCGCTGACCAGCCAACAAATGGCAAGAAGAAGTTCATCTACCAGCTCAACAGCAAAAAGCACCACCACTATGAGCCTGACCCGAGCATGTACGACGCACAGGCTTCCAGGCTAAAGGAAGTGGTCAAGGTTCAGGAACCCGCCAGTAAACCCACAAATCCTGGCTGGAACTTACCGCTGGCCCTGCAGCAGAAGTGGGTTCGAGACAAAGACACAGGCTGCTTGAGCAAAGTGAAAGAGATGGCAGTGGAGGTGATGAAACCGGCTGTGAAAGATGCTGAGAGCGAACACGCCCTTAAACCCAATCCTAAAGACGCAACCCTGCCGAGCGCCGTGAGCAGCAAAATGAAGATAATCAAGAACAAAAACAAGAATGGACGTATTGTTATTGTCATGAGCAAATATATGGACAGCAACAAGGCTCATGGAGCCAAGGGTAAACACGGGGAGTCTTCCAGCGAAGTGAAACCCCAAAACACCAAACCGTCGGACAACAATCCAGCACACACAACCAAAATGGTGGAGCACCCGGAGAACGGTCTCCCaAAAGAGCTCTGTAACGGCAGCTCCCTCCCGGCTGCAGAGCATCCTATAAAGTGTTCCCCAAAGGACAGACACTTCTCCAAACCGTCACCAAGCACAGCAGAGGAATACAACACCGAGGTGGCTCGCGGTCAGGCCGACTTACCGGATGATCTTCCCCTTCAGCTGACCGCTAGCTCACCGCTTACGTCCTGGTCCGTCGACAACAACATCCCGACCCCGACGTCCGTGGACCAGATCAGGATTCCTTCTTTTCCCAACGACCGCAAGCGGAAGCTCTCGGATCCCGCTGAGGACAGGAGCGTCTCCAAAACCTACCTGACTTCCAGAAGCTTCAGCGTCCCCAGCACTGTGGCCACGCCCCCTCAGGACAAACCGATGGACCTCCACTGTAGCGGCCCCCGCCACAGCAGCACATTTACATACGAGGTTGTGGACTCTGGCAGCCAGGAGGAGCCGATGGATCTCAGCTGCCCAAAGAATAAGAAGCAGGCGGAGACGGAAGTAGCGCCGGAGGCCGAGCCTGTCGTCACAAACACGACTCGCGTAATAGAAGACACGCAGACGTCCGCGGAGAAATCGACAGAAGCACCTCTTAAAGATATCTCCCCTTTTATGGGAAATATCATAATCACTGACATTACAACAAACAGTCTCACTGTCACATTCAAGGAATTTGTTTCTTTCATGGAGCTCCCTGCCGCCGGAGAGCACGTCTTTGCGGTGGAGGGCATCGAAAAGAAGCGCATCCGCAAGGGCAAGATCGAGTACCTGGTCAAGTGGCGAGGCTGGTCTCCGAAATACAACACATGGGAGCCGGAGGAAAACATCCTTGACCCGCGCCTCCTCGTCGCGTTTCAACACAGAGAGAGGCAAGAGCAGCTGTTGGGATATCGCAAACGGGGGCCAAAACCCAAACATCTTTTACTCCAGGTACCCTCCTTTGCCAGAAGATCCTGTATCCCTGCAGGTTTcGAAGAATCATCTCAGGATGCAGAGGCTATCCTCAAGCCCGACCCCGTCCCGGTCCAGCGGCCCCAGCCTCAACAGTACCAGCTCAACAGCAAGAAGCACCATCAGTACCAGCCCAACAGCCAGGAGGTCCCCGCTGACCAGCCAACAAATGGCAAGAAGAAGTTCATCTACCAGCTCAACAGCAAAAAGCACCACCACTATGAGCCTGACCCGAGCATGTACGACGCACAGGCTTCCAGGCTAAAGGAAGTGGTCAAGGTTCAGGAACCCGCCAGTAAACCCACAAATCCTGGCTGGAACTTACCGCTGGCCCTGCAGCAGAAGTGGGTTCGAGACAAAGACACAGGCTGCTTGAGCAAAGTGAAAGAGATGGCAGTGGAGGTGATGAAACCGGCTGTGAAAGATGCTGAGAGCGAACACGCCCTTAAACCCAATCCTAAAGACGCAACCCTGCCGAGCGCCGTGAGCAGCAAAATGAAGATAATCAAGAACAAAAACAAGAATGGACGTATTGTTATTGTCATGAGCAAATATATGGACAGCAACAAGGCTCATGGAGCCAAGGGTAAACACGGGGAGTCTTCCAGCGAAGTGAAACCCCAAAACACCAAACCGTCGGACAACAATCCAGCACACACAACCAAAATGGTGGAGCACCCGGAGAACGGTCTCCCaAAAGAGCTCTGTAACGGCAGCTCCCTCCCGGCTGCAGAGCATCCTATAAAGTGTTCCCCAAAGGACAGACACTTCTCCAAACCGTCACCAAGCACAGCAGAGGAATACAACACCGAGGTGGCTCGCGGTCAGGCCGACTTACCGGATGATCTTCCCCTTCAGCTGACCGCTAGCTCACCGCTTACGTCCTGGTCCGTCGACAACAACATCCCGACCCCGACGTCCGTGGACCAGATCAGGATTCCTTCTTTTCCCAACGACCGCAAGCGGAAGCTCTCGGATCCCGCTGAGGACAGGAGCGTCTCCAAAACCTACCTGACTTCCAGAAGCTTCAGCGTCCCCAGCACTGTGGCCACGCCCCCTCAGGACAAACCGATGGACCTCCACTGTAGCGGCCCCCGCCACAGCAGCACATTTACATACGAGGTTGTGGACTCTGGCAGCCAGGAGGAGCCGATGGATCTCAGCTGCCCAAAGAATAAGAAGCAGGCGGAGACGGAAGTAGCGCCGGAGGCCGAGCCTGTCGTCACAAACACGACTCGCGTAATAGAAGACACGCAGACGTCCGCGGAGAAATCGACAGAAGCACCTCTTAAAGATATCTCCCCTTTTATGGGAAATATCATAATCACTGACATTACAACAAACAGTCTCACTGTCACATTCAAGGAATTTGTTTCTTTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF17218	CBX7_C	CBX family C-terminal motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR017984	Domain	Chromo domain subgroup	Interproscan
IPR023779	Conserved_site	Chromo domain, conserved site	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR033773	Conserved_site	CBX family C-terminal motif	Interproscan
IPR043531	Family	E3 SUMO-protein ligase CBX4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46727	E3 SUMO-PROTEIN LIGASE CBX4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0016925	Biological Process	protein sumoylation	Interproscan
GO:0032183	Molecular Function	SUMO binding	Interproscan
GO:0035102	Cellular Component	PRC1 complex	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0061665	Molecular Function	SUMO ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-