Gene detail

Detailed information of HS20254 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20254	RIBOSOMAL S SUBUNIT	chr23	9952672	9954817	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20254

CCCGGCGAGACTTCACGTCGGTCTTCTTCCTGTTTTAAAGATCACGTAAGTCGAATGCAGACTAATCCCTCCCCACCAAAATCGTGCTTTATCTCACACATCCTTCTGCTAAACTCAACCGTCACATCAACTAAATGACTCTTATATATGTTATTTCTAAACCCGGCTAATATTTACGATAATAATGTGACAGAGTTTGAGATATTCTTAGATGTTGACCGACCGATGAACACGGCGGTGATCGTTTTGTGTGAGATGCATGGCGCGTCAGATGCTCGCTAACTTGAGGCTTTAGAGGTTTATAGGAAACACTTTCTGACCTGTATTTTGTTCTGCAGCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTCCGTGGAGGTTTTggaggaggtggccgaggaggcggcggcggcggcggcgatcgtggggatcgcggccgaggccgtggacgcggcagaggccgtggcaggggccgcggtgcccgcggcAAGGCCGAGGACAAGGAAGTAAGTTCAACCCTCACTAATGTTTAAATGACTAATTAAACAATATCCTAATAATTCAGAAAACCACCAGCTATTACTAACAGATGCTTTTGTCTTTTGCCAGTGGGTTCCCGTCACCAAGCTGGGCCGCCTGGTAAAGGACCTGAAGATCAAATCCCTGGAGGAGATCTACCTGTACTCTCTACCTATCAAAGTAAGGAGGCTGTGATGACGAACAGTGACAGGCTGCTAACCTTTAGAAGGATGGCTACCGCGAAGCAAAGATAAAGATATGTCTATTGCGTGCAAATAAGATCATTGTTGGTGTATATTGTTTGTGCCATCATCCCCACTGGAGGTACAACTTCTATTGGAAGTTTCAAACACCCGAGTCCTTTTAACATCAAAAaTTCGTTTTCAATGCATTTTCCAAAATCTTTCCAATCTTTAAACTATCTAACATTCCACCACAATAGGATATTGTACTTTTCTAATTTACAACTTCTATGTTGGTGGGCAATTGCTTATGTCTTTGCTCAGattaaatatcatttggctgacttttgtacaaagtgacttgacaagagtccattcaaccatgattatgaactCATTTCTTTTAGATGTGATGAAGTATAGTATTTTCAATATATTATGGATATCATGCATTTGTATTGATAATGAAGTGCATAGATGTGGTTGCAATACCAAATGTGGTGTCATGATGCATTGTTAAATATGTTTTTAAAATTCTTTCCTGCAGGAGTCAGAGATCATCGACTTCTTCTTGGGTTCTGCTCTTAAGGACGAGGTGCTCAAGATTATGCCTGTTCAGAAGCAGACCAGGGCTGGTCAGCGCACCAGGTTCAAGGTGAGTCATTAATTGTATGGGGATGGTCTTATTTTATGAGTTATGTCATCCCATAGTGTTGCTGGTACAAATGTAACTGTTTTTTTGTTTACAGGCTTTTGTTGCCATTGGCGACTACAATGGTCATGTGGGTCTGGGGGTGAAGTGCTCCAAAGAGGTGGCTACAGCCATCCGTGGTGCCATAATCCTCGCCAAGCTGTCCATTGTCCCCGTGAGGAGAGGTTATTGGGGTAACAAGATCGCCAAGCCCCACACCGTGCCCTGCAAGGTGACTGGTCGCTGTGGCTCTGTGCTGGTGCGTCTCATCCCTGCACCCCGTGGTACTGGCATTGTGTCCGCCCCCGTGCCCAAGAAGCTGCTCACGATGGCCGGTATCGATGATTGCTACACCTCTGCCAGAGGCTGCACTGCCACCCTCGGCAACTTCGGTAAGAATCCTCTGATGATTGCGCAGCTTAAGATGCATCTGTGTTGCTGAAGTTTTCTCCTTGCTCTGCATCACCATTGCAGTGGTGTAGTTTGCATTGTCCAACATTGTAACCCAAAACACATCATCTAGTATTATGCATAGAGCGCCATCTTGAGCATGTCCTCATTGTTTCTTTAAATTTCCTCATCAGCCAAGGCCACCTTCGATGCCATCTCCAAGACGTACAGCTATCTGACACCAGACCTGTGGAAGGAGACAGTCTTCACAAAGTCTCCCTACCAGGAGTTCACTGACCATCTGGCCAAGACTCACACCAGGGTGTCTGTGCAGAGGGGACAGCCTGTCCCACCATCTACACCCGGCGAGACTTCACGTCGGTCTTCTTCCTGTTTTAAAGATCACCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTCCGTGGAGGTTTTggaggaggtggccgaggaggcggcggcggcggcggcgatcgtggggatcgcggccgaggccgtggacgcggcagaggccgtggcaggggccgcggtgcccgcggcAAGGCCGAGGACAAGGAATGGGTTCCCGTCACCAAGCTGGGCCGCCTGGTAAAGGACCTGAAGATCAAATCCCTGGAGGAGATCTACCTGTACTCTCTACCTATCAAAGAGTCAGAGATCATCGACTTCTTCTTGGGTTCTGCTCTTAAGGACGAGGTGCTCAAGATTATGCCTGTTCAGAAGCAGACCAGGGCTGGTCAGCGCACCAGGTTCAAGGCTTTTGTTGCCATTGGCGACTACAATGGTCATGTGGGTCTGGGGGTGAAGTGCTCCAAAGAGGTGGCTACAGCCATCCGTGGTGCCATAATCCTCGCCAAGCTGTCCATTGTCCCCGTGAGGAGAGGTTATTGGGGTAACAAGATCGCCAAGCCCCACACCGTGCCCTGCAAGGTGACTGGTCGCTGTGGCTCTGTGCTGGTGCGTCTCATCCCTGCACCCCGTGGTACTGGCATTGTGTCCGCCCCCGTGCCCAAGAAGCTGCTCACGATGGCCGGTATCGATGATTGCTACACCTCTGCCAGAGGCTGCACTGCCACCCTCGGCAACTTCGCCAAGGCCACCTTCGATGCCATCTCCAAGACGTACAGCTATCTGACACCAGACCTGTGGAAGGAGACAGTCTTCACAAAGTCTCCCTACCAGGAGTTCACTGACCATCTGGCCAAGACTCACACCAGGGTGTCTGTGCAGAGGGGACAGCCTGTCCCACCATCTACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00333	Ribosomal_S5	Ribosomal protein S5, N-terminal domain	Domain	Interproscan
PF03719	Ribosomal_S5_C	Ribosomal protein S5, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000851	Family	Small ribosomal subunit protein uS5	Interproscan
IPR005324	Domain	Small ribosomal subunit protein uS5, C-terminal	Interproscan
IPR005711	Family	Small ribosomal subunit protein uS5, eukaryotic/archaeal	Interproscan
IPR013810	Domain	Small ribosomal subunit protein uS5, N-terminal	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR018192	Conserved_site	Small ribosomal subunit protein uS5, N-terminal, conserved site	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13718	RIBOSOMAL S SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-