Gene detail

Detailed information of HS20175 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20175	TFIIF-ALPHA	chr23	8363976	8368414	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20175

ATGACCTCCCTGGTAAGTTTGAGCTCGCTGCTCTCAACGACCAAACACAAAACCTCCCTCGTATACCTGGTAATAAAGTGCTGATCTTGTACTTGCACGTGTAATCTCATGACGAGTTAACTGTACGGTAAACAAAGCGCATTTTTCACATCGCATGTCACGTAGAATGCTTTTTATTATTGTTTATCTCAGCTTGAAAGAGGGTGTCAGTCTGTTATGCTACAGATGGAATAAAGTGCTGAGACCGAAGTCACTCAAAATCTATTCTTTGAATCTGTTTGTCCTGTAGGGGAGCAGTAGTTCCTCAGCCACGGAATACACAGTGCGAGTCCCCAAGTGAGTAGGAAATGTGTCCAGACCAGCCGAGTCATGTGTCTATTGTTCTGGCTGTAACTGTGCCGAGGGTTTGTGTACCTACTGGGCGTTCAGAGATACTCATATATGTTTTGCAGACATGTGTGTAAAATGTGTATATTAAGTGATTGTATGTGTCTGTACTGACCTGTGTGGTAGTCCTTTATGTTGATGTGAATCCTGAAATGTGCCACTACAAACAAATAATTGATTTATTGGACTATATGTTTATACTCTGCGTATTAATGGGAATGTAGTTGTTAATCAGCATTAAATAATTTTTTTATCTGGCAAATATTCTTGTGACCCTCCATTTGTTTTGGTTTATCTGTCCCATAGAAACACCAGCAAAAAGTACAACCTCATGGCTTTCAATGCTGGAGACAAAGTCAACTGTTCAACCTGGACACAGGTGGGCTTCGTCTCAGGGGTGTAGCACAGAGACAAATGACAAGCAGCGTGATTACCCTAAACGAAATCAGAAGTCTAAGATAAGTACCATCTTTCAATTTCACATTTCTTCCTCTCTTCCCAGGCTCGTATGGAAAGAGACATGAGTGGCCGGCGGATATATGGGGACGAAGAGACGGCCGATGGCGCAGCCGGCAGTGAGTTTGGCAAAAAGCAGCGCGAGGAAGCGCGCCGGAAGAAGTTTGGTATCGTCAAACGAGAGTTCAAAGTGGAGGATCAGCCCTGGATTCTCAAGATCAATGGCAAGGCCGGCAAGAGGTGGGGAGAAAGAAACTTCACGTTTGATTCACTCCCATTCAACCATCCCCTTTTGAAACTGGTTAGGTTCAGAGGGAGCACACACGCATAGTTATGACATCACTGACATGTTTTAGATGTAGTTATTATTTACACCAAACTCTCAGCCAACTATTTCAAATCTGTAACGATCCAAGTTGCAAAGTTTTAAAAGCTCTTGAGTGACTAAAGTTTCTACTTTGTACTTTTCTTCAGTGATATCTACTGTTTGGGATACAGCTATTCACTTACTCTGTGTACAGGTTCAAAGGTCTAAAGAAAGGCGGTGTTACAGAAAATGCATCCTACTACATCTTTACCCAGTGTCCTGATGGAGCGTTCGAGGCCTTCCCTGTCCACGGCTGGTACAACTTTACGCCGCAGGCCAAGCACCGAACCCTCACTGCTGAGGAGGCTGAGGAGGAGTGGGGCAGGTGTGAATGGGGGATGAACAGGGAGAGAAACAAATAATGATGAAATGCTTTGTATGTACGAGTACATAGTTGACcTATCAGACATTCTCCCCATTTTACAGAAGAAACAAAGTGGTGAATCACTTCAGCATCATGCTGCAGAGACGTTTCCGGGAGCAGGAGCGTGGCGGTAACGATGATGATGATGACGAGAATGAGAAGTCGGGGAAGAAGAAAAAAAAGGGGGGTGGCAGAGGGGGCGATCTGCGCATTCACGACCTGGAGGAGGACCTGGAGATGAGCAGCGATGACAGTGACAGCAGTCTGGGGGACGGTAAGAAGAAAGAACCGGCATTGTTGACCGACGCGCGTCCACGTTTTCATTCCGCCTGTCATCATGTGCGTTTTCCTTTTTCCACCCACCTCTTCATCGGACAGACGGAGAGAGTAAGGCAAAGTCgaagaaaaacgcagggaaaggaaaagcaaagaagaagaagaagagaaagaGCAGCGACAAAGAGGCCTTGGAGGACAGCGATGACGGCGACTACGAGGGTCTCGAGGTGGATTACATGTCGGATGAAAGCAGGTCAGATCCGTCGCGGTGTTTCACACGAAGACTCCCTCTTTGTGTCCACTCGCCAAACGTTTGTGTTGGCTGTGTTTCTTCTCTTACTAGCATGTCATTCTGTTTTCCAAAGCAGTTCAGAAGAAGAGCCGGAAAAGGGAAAGATCAGAAAAGGAGAGGATCATCCCAAAGGTCAGGCCATCCGCTGCTGGACTTCACTGGTTCATTCATCATTCATTATTGAAAAGAAGACACTGATGACTTTCTGCATGTGTTGTACACAACATGAAACATAGCTCATGATCACTGGGTTAAAAGTTTGGCTGGGAGGGGAGGGCTGAGAATGTTTAGGCACCtttcgattccgagggctacgaggtgattataacacgattgtgggatcatcttgaattttaacatgcgtgatgtcttttttccgttatcttttataaattcaatttaagtcacaaatagaagcgatgtgtcaactggagtgttacatttacaagtgctgcaaagacaaccaacaggaaactaaatgaagatgggtctatagcagcacgctcgtagtaaagatgcataattcagcatgttctgaatcatttgatataaaaagccgcccttattcataaataaataTTGAATTATTTGTCTGCTCAAGCTAAGCGACCCTCACCCAAACTCTGCTAGTATTTAGTCTGGTTTAGAAAGTAAACAAGATTCATGTGGATTACATCTGTTGCGTTCAGGGCCAGCGGTAAGCAACGGACAGCCCAGTGTTACAACATTTTACAGGATGTTGAATTTAGTTTTCTGTGTCGAGTCAAAATCGTTCAAGAGAGCATATCTATTTTTATTTTTTTCACCCCACTAAGGGCAATCGTCCATATCAGTGGAATGAGAGTCCTCACTCGATGTACACACACTTTTTATTTGTTAGCAAACATGCATTTTTGTGATTAGTATTTAGATTTTTTTTCCTACCCAAATGTTTGTCCTTTTATAGGGaTCGATGAGATGTCCGAAAGTGAGGAAGAGAGTGAGGAGGAGAAAGCCAACgaagaggaagcaaaagaggaggaagaagaagaggaaggaaagaagacgccggtccaagcggaaaagaagaagaaaaaAGGTGCAGATCTGGGTTTCACATCCTTTAATGAGGACTTAATAAACATGAGCAGCCTTCAATGATACTCACTTCTGCTTGATCCATAAAGACACGTGAATTTACaTTGTATGTTTTTGTGTCGCAGACAGCAGCGGAGAGTCCGAAAGCTCCGACGACAGTGACATCGATGGAGAGACTCCCTCCGCGCTGTTCATGGTGATTAGTGTGTGTGTGTGGGGCTGCATAAATGGATGTTTGTGCATTTTCTCGGCCTAACCTACACTTTATTATAAAGAACAGTATCATCAGTGACTAAGAGTCAATAATGGGGCTCTATCACAAATCCTGAATGTTTAAAATCACTGTAAAGCAAAATCTACCAGCAGAGCTTTTATGACGTTTTGTTGCGGGTGACTGTGGTTCTGTATTTACATTTCTCTTTCCGTCCCGCTCTCAGAAGAAGCGCACGCCTCCTAAACGTGGAGGACGTGGCTCTGCAGGCAGCTCCAGGACCGGCAGTCGCCCCGGGACCCCATCCATCGACTCCGCCTCCACCTCCAACACGCTCCGCGCTGCTGCCAGCAAGCTCGAGCAAGGTGTTTCCTCATACCCCCATTTATCGATAACTTAAATAAGATGCGTGACATACTGTattaatGtTCACGGCCATCAACTCTGAATTTGAAGTTGACGAgTTAGTTATTCTATTCCAACTAAATGTCTCTGTCCTGCAGGTAAGAGACCGACTCCGGGTCCCAGCGCCGACTCTCCAGCTGCCAAAAGGCTCAAAATGGAGCCCAGCAGTCAGAGCCCAGCTCCCTCTGGGAAGAGTACGCCTCAACCACCATCAGGCAAATCCACTCTCAGCTCCAGGTACTTGACGGTCACCAGTCTCCCTTCATGCCTTTCAGAAACATTAAGTCATTTAATTATTCTGAGATTTACTGTAAAAACTAAACTGTTTTGCAAAAGTTAAACTTTTGTCATCGTGAACAGGTTAATAACCGAGTTATTTTCTATCCGTCCACCCCACAGTGACGTGCAGCTGACGGAGGAAGCAGTCCGGCGATACCTGATCCGTAAACCGATGACCACCAAAGACCTGCTGAAGAAGTTCCAGACCAAGCGCACCGGTTTGAGCAGCGAGCAGACCGTCAACGTGCTGGCACAGATCCTGAAGCGCCTCAATCCGGAGCGCAAGAATGTGAACGACAAAATGCACTTCTACCTCACTGAGATGACCTCCCTGGGGAGCAGTAGTTCCTCAGCCACGGAATACACAGTGCGAGTCCCCAAAAACACCAGCAAAAAGTACAACCTCATGGCTTTCAATGCTGGAGACAAAGTCAACTGTTCAACCTGGACACAGGCTCGTATGGAAAGAGACATGAGTGGCCGGCGGATATATGGGGACGAAGAGACGGCCGATGGCGCAGCCGGCAGTGAGTTTGGCAAAAAGCAGCGCGAGGAAGCGCGCCGGAAGAAGTTTGGTATCGTCAAACGAGAGTTCAAAGTGGAGGATCAGCCCTGGATTCTCAAGATCAATGGCAAGGCCGGCAAGAGGTTCAAAGGTCTAAAGAAAGGCGGTGTTACAGAAAATGCATCCTACTACATCTTTACCCAGTGTCCTGATGGAGCGTTCGAGGCCTTCCCTGTCCACGGCTGGTACAACTTTACGCCGCAGGCCAAGCACCGAACCCTCACTGCTGAGGAGGCTGAGGAGGAGTGGGGCAGAAGAAACAAAGTGGTGAATCACTTCAGCATCATGCTGCAGAGACGTTTCCGGGAGCAGGAGCGTGGCGGTAACGATGATGATGATGACGAGAATGAGAAGTCGGGGAAGAAGAAAAAAAAGGGGGGTGGCAGAGGGGGCGATCTGCGCATTCACGACCTGGAGGAGGACCTGGAGATGAGCAGCGATGACAGTGACAGCAGTCTGGGGGACGACGGAGAGAGTAAGGCAAAGTCgaagaaaaacgcagggaaaggaaaagcaaagaagaagaagaagagaaagaGCAGCGACAAAGAGGCCTTGGAGGACAGCGATGACGGCGACTACGAGGGTCTCGAGGTGGATTACATGTCGGATGAAAGCAGCAGTTCAGAAGAAGAGCCGGAAAAGGGAAAGATCAGAAAAGGAGAGGATCATCCCAAAGGGaTCGATGAGATGTCCGAAAGTGAGGAAGAGAGTGAGGAGGAGAAAGCCAACgaagaggaagcaaaagaggaggaagaagaagaggaaggaaagaagacgccggtccaagcggaaaagaagaagaaaaaAGACAGCAGCGGAGAGTCCGAAAGCTCCGACGACAGTGACATCGATGGAGAGACTCCCTCCGCGCTGTTCATGAAGAAGCGCACGCCTCCTAAACGTGGAGGACGTGGCTCTGCAGGCAGCTCCAGGACCGGCAGTCGCCCCGGGACCCCATCCATCGACTCCGCCTCCACCTCCAACACGCTCCGCGCTGCTGCCAGCAAGCTCGAGCAAGGTAAGAGACCGACTCCGGGTCCCAGCGCCGACTCTCCAGCTGCCAAAAGGCTCAAAATGGAGCCCAGCAGTCAGAGCCCAGCTCCCTCTGGGAAGAGTACGCCTCAACCACCATCAGGCAAATCCACTCTCAGCTCCAGTGACGTGCAGCTGACGGAGGAAGCAGTCCGGCGATACCTGATCCGTAAACCGATGACCACCAAAGACCTGCTGAAGAAGTTCCAGACCAAGCGCACCGGTTTGAGCAGCGAGCAGACCGTCAACGTGCTGGCACAGATCCTGAAGCGCCTCAATCCGGAGCGCAAGAATGTGAACGACAAAATGCACTTCTACCTCACTGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05793	TFIIF_alpha	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008851	Family	Transcription initiation factor IIF, alpha subunit	Interproscan
IPR011039	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13011	TFIIF-ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001096	Molecular Function	TFIIF-class transcription factor complex binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005674	Cellular Component	transcription factor TFIIF complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-