Gene detail

Detailed information of HS20132 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20132	RAB GTPASE-BINDING EFFECTOR PROTEIN	chr23	7892785	7897930	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20132

ATGAGCTCCAAGACTGAAGACGCAGGTAGCTAATACTACATAAATAATTAGCAACGTTCAACTTGAGCCGGCTTTATTTCTCATGTGACGGCTTGTGAGAGGATTAAATCCTGACACTTTCAAAAAGAAAAGCGTCAACGTGAACTTGTTGCTTTGTGAGTGAAACACTCtGGTCAGTTAAACGGCTCACGGCCCGTTCGCATCGCTGACCGCCATAGGAATGAACGGGTGCTGCTAGCCGCGAGCTAACTGACGTTCAACCGGTGGTTTggtgttacgatttaacaggcgaccctgttaactggcgacttacagccgaaggcggccgttgttgtcgtagttacgccagctgttggataaaaagacgataatacgtagcatgccgcattgtttattttgtaTATGTCATCTATATATACGTTTTATATGAGAGGGGTTGACAgtggtattcacgaggacagctacgtgttctcatcctattttctatagctgtcgtaactacgacgacaacggacgcgttcggctgaaagtcaccagttaacacggtcgcttgttaaaccgtaacaccggaccttgtctaaaccACCCGAACGCAATGCGAGCTCTCGGTGACACGTCTTCAATTAGTTATTATTGCAGCTACGTGACGACTGTAACAACTTGACACTAAAACAAGGTGGATCTGCTTGTCACGCTAAGCGTTTACCTTCAAACTGGAACTACAGGTGTTGCTGTGAAGTTGTCCAACATCAGAAGACAGACATTCTCAGCTGTGCTCACCAACAATACGTCAGAGAAATATAACACATTGTGtACATGTGTGCAGGAGTCTTTACAGCCGTAAATCAATTGATAAGTTCATTTTATGTGGCACCTGTAGTCATATAAGGTAATCATGATGTAATGTAAATAATAGACCCCGAAGTTGTGTTTTTAGATCAGAGATCCAGGACCCTGACAGCTGAAAATAGGTTATTGAATCACCTTGATACTAACTAGTGTTAAGAGAATAACTGAGTGTCAGAGACCCAAGCTGTGAAACTGGATGTAATACACAACATGTTTAGCTCTATAACTGTTTATTATTGATATATATCATCTCTTTGAACTGAGCCCAGATCTGGGTATGAACAATATTACAGACTGTTATTTCTTTTTCTGTGAATGACTAAAGATTCCCATATGAGTCCACATTTTGAAGATGCAAACATCTTCAAAGATGCAAAGAAGATGCAAACATCTTATAAACGACGGAATGAAGCTTAAATACGTCTCTGTCATTTTCAGAGGCGAGCCTGCAGGCCCAGCTAGCCGAGTTCCGAGCTCAGGCCGAACACTGGCAGGGCGTGGCGACGATCTGCGAGCTGAGCAAACAGGAGGAACTGGCAGAGCTTCAAAAACAATGTGATCAAGAGATCCAGTCCCTGCAGGAGGCTCTCAGAGGTCAGTGTGTGCGTTTATGTGTGTGATAAGCACGGTGAGATTGTGAAGGACCTTGTGTGCACATTTATCTGATTTCATATTCTTAAGTATTTTTTTCCTTTCATTTTTTCTTTCCCCGTTCGTGTAATTTTGAAACGAGACCAAATGGACACACACGTAATATTTTCCTGTTTACTTTAAATCAATAGCATAAGTTAAACATTTTATTCAAAGCTCAGAATGAAAGATCAAACTAAAACATTAGCGTATAGTTCAGGTACAAAACAAGGAATCGGGAGAGGACAGGGAAACGGTTGCATGTCGGTGAAGTTATACTTCTTTTTAAAACAATGTGTTTATCGTTATAAATTGAAAGTCTTGCTAATATAATACAATCTCAAATGCGGCTACCCGTTTACTTTTTTGAAGTATTGTGAGTTTATGAAAATATATCTTATTTGATCTCAACCATTGAGACAAACCGGATGCTGTTCATCTGACTGGAGAATGTAATCATTATTTCATGATCCTGTTGTCTCCACAGAGACGGCAGCGCAGTATGAGGCTCGGATATCCGTCCTCCAGTCTCAGGCTGGGGAGTGGAGGAGAGCCGGGGGACAGAACGTGGTCAGTGTTTGACTTTGTGTCTTTTTTtCTCTCAAATTGTTCATAAATGTCCTGGTCGTAATCCCAGGCGTTATTTATTTTTCTCTACCTGTTAGATCAGTGGAAGGAGAGGCAGGACaGCTGCAGAAGTCTCCAGTAATGACGCCCCCACGTCGACCAGCAcCAGCAGCCTGGCGGAGGCCGAGGCCATGTTGTCGACGGACAGGAGGCACAACCAATCAGCtGAGCCCGAGGCGGCGGTGGTGGAGGGCGAAGGGACTCCTCCCGCATCGGAGGCGTATTTTTCACTGCGGAACTGCGACTCGGCCTCGTTGTCGTCCTTCTCGTTAGACACGCCCTCTCTGCCCAGAAAACTCCACGCTCAGGAGGACACCGACTCTCTGGTCTCCACGGGAACTTTGGTGCCCGAAGCCATCTACCTGCCGCCGGCCGGACACCGGCTGGTCACGCACGGCGACTGGGATACACTCAGTGATCGGGTACAGTTTCTAAAGTCGGGTTTTACACTTTTACGACGGAAGAACATTCACGCAAAGTTCTCAGTCCGACCAAAAGCTTCCCCGAAAACAAATGACGTGGCGGTGTAATtAGGATGTGaTATTTTTTTcCCGTGCAGGTGTCAGAGCTGCGAGGGcAGGTGTGTCGGCTGCAGGTTGAGAAGGAGGAGCTGGAGAGGGAGCTGGACACACAGACCAACCACACACACAAACAGGTGAGCAGCACGCCTCTGAGTCTGCAGCAGTGAGAgTCAGTGCAGACTGACaCGCAtgtgtgtgtgtgtgtgtCCAGGTGTCAATGCTGCAGTGTCAGGTCCACACTTCAGAGGTCCTCCTCCAGGATTTGCAGAAATCTTTCAGCCAATCACAGAATGCCGTCCAGAGtCGGCTGGTGAGTGACTTGAGGTCGAGTGTTTGTGATTTAtCTCCAAGGAATACTTTCCTCACTGTAAGGTTGCCAGCTCACAATATAATGATTCTACATTTTAGTCATGGGTGTtacagattaaactaacagtgtttgatttgtgaccttttgaggtatttgccattggaaaggccagctgttaacctcctcttccaggttttttgctctgctaagctaactggcatatttagtgtgcagacataagattcatctcaaATGTAAAATTGTTTGTGGTTGGTTGTATTTCAACCATCTTGATTACAATGAGAACGATGATGAAAACATAAATGAAGTTGCGGCTCTTAAAGTGAGTTTTTTCCATAAATGCGTATCCCAAGTGCTTCATGACTCACTCGTCCATCACGCGGCGATTAAGCCAACAGTAGCCACTTGATCAGTACGTTACGTATTACATAAAGTACGGTGACCTCATTCAGCAGACGTAGGTGTTCACATCTATATGTGTGTGTCCAGGCAGAGTTATCCTTTTCCCAGAGGAAGGTGTGCAGTGAGCTGTCCCGACTGAAAGGAGAGGAGGTTGAGGATGAGGGACCTGACTCCAGCTCATCATTCCCAGCAACACTGCAGGTAAAATAACTGCTCTAGGTTTTCGTTTGCAGCATATCTGCTTGACTAGCTGTTTTTCTTCATTTCAGATAGTTGTTGAGATGACTGTAAATTATTGAAACAACTTCATTAATTGGAGGTTCATTAATTGTCAATGTCCTGGCTCTGCAAGGAtatatatatttttgtatctgttgttagttttacatttttatttggtgtctttttaatttGAGGTTCTTGAACAACTTGTCTAGCAGGTGGTTtCTGTTTATGTGTCTGCTGCGTGGCTGACTGACTCTGACCACCAGGGGGCGCACTGCGAGGAGCGTCTTCGCATCGAGATCGTCAACCTGAGGGAGCAGCTGGCCGCCCGGACAGAGGAGGACGGTCTGTGGAGGATATCATTATTTAGGGCAGGTTTGCCTTaCTGACgGTCTTGACACaGTTTTAATTtctctctctctctctctctTCCCcTCCTGCCTGCTCCAACTTGCAACTACTGTCATTAGAAGTTTTAGAAGGTGAGTCTGCAGTTTTATTATTACTCTGATAAGCCAATTAAGATTGGTGTAGCGTTACATTTCATTCAGATTTATTTCACTTCATAAGAGGCCACTTGTAATGAGCATGTTTTCTGTCGCTCCTTGCCCGTGCAGTGCAGCTGTCCAGTCTGAAGACGGAGACGGAGAGGATCCAGAGTCAGAAGGACCAGTTGCAGGCTGAACTGCTGGCCTGCCGCACTGAGCTGGACGCCCTGCGGTTGGCGCTGTCTCATGTGCAGCGCACCAACAAGACCCTCAGTGCTGACAAAGTAAATGCAACCTGCTTCTTTTAACTCCACGCTgCCTGTGTGCCTCAGCGAGGTCTGTTGTGCTGATTATTTATACAAATTaAGCGTTAGTAATCgTATGAAcAAAcAAAAAAAGGAcGATCTTAAAACAACTTCCTGATTGATGGAGTCCTTGAACgGAaAAAATTGTATTTTCATCCTCTGAGGAATCCTGATTAATTAAGTGATTAATCATGATTATTGGTCtGTtTCAGGAAATTAAGAAATAAATGCACatGTCGTGTGAgcCTGCTTTACAATATGAACATAATGAGAAGCGAGTGTGACATGTGGTGGGCCATGAATCCATAATACTGGATTACTCTTACATTGCGAGTCCAACAAATCGTGACGTGCGTTCTTTCGTCGACACTACgGCTAGTTGCCAAAGACATACATTGTCTTAACGATTTTCTCCGCGGCTGTCAGGCaTCCATGCATCAACAGTGTCTGGAGCTGCGGAGCCAACTGATCAGCCTGCGCTCGCAGGTgGACACCAGCCAGACGGTCCAGATGGACTTCGTCCAGCTGTCCCAGTCGCTGCAGGTAGGAGGCAACACGTTGGAGAAGTTAGCTTGAGAGGAGGAGGAGTGGTGGTGGTAAACAAATgGTCAAATCGTCAAATCAATTCCATATATACACATCAATGTTCCCCGTCTGCCCCTTCAGATGAAGCTGGAGGTAATTCGGCAGGCTGAGAGCATCGAACAAGTCAGGGAAATCCTGGAGGACGGAGTCAGTGAAGCTGGTTCCCtgcctgcagacgcttcgATGAGCTCCAAGACTGAAGACGCAGAGGCGAGCCTGCAGGCCCAGCTAGCCGAGTTCCGAGCTCAGGCCGAACACTGGCAGGGCGTGGCGACGATCTGCGAGCTGAGCAAACAGGAGGAACTGGCAGAGCTTCAAAAACAATGTGATCAAGAGATCCAGTCCCTGCAGGAGGCTCTCAGAGAGACGGCAGCGCAGTATGAGGCTCGGATATCCGTCCTCCAGTCTCAGGCTGGGGAGTGGAGGAGAGCCGGGGGACAGAACGTGATCAGTGGAAGGAGAGGCAGGACaGCTGCAGAAGTCTCCAGTAATGACGCCCCCACGTCGACCAGCAcCAGCAGCCTGGCGGAGGCCGAGGCCATGTTGTCGACGGACAGGAGGCACAACCAATCAGCtGAGCCCGAGGCGGCGGTGGTGGAGGGCGAAGGGACTCCTCCCGCATCGGAGGCGTATTTTTCACTGCGGAACTGCGACTCGGCCTCGTTGTCGTCCTTCTCGTTAGACACGCCCTCTCTGCCCAGAAAACTCCACGCTCAGGAGGACACCGACTCTCTGGTCTCCACGGGAACTTTGGTGCCCGAAGCCATCTACCTGCCGCCGGCCGGACACCGGCTGGTCACGCACGGCGACTGGGATACACTCAGTGATCGGGTGTCAGAGCTGCGAGGGcAGGTGTGTCGGCTGCAGGTTGAGAAGGAGGAGCTGGAGAGGGAGCTGGACACACAGACCAACCACACACACAAACAGGTGTCAATGCTGCAGTGTCAGGTCCACACTTCAGAGGTCCTCCTCCAGGATTTGCAGAAATCTTTCAGCCAATCACAGAATGCCGTCCAGAGtCGGCTGGCAGAGTTATCCTTTTCCCAGAGGAAGGTGTGCAGTGAGCTGTCCCGACTGAAAGGAGAGGAGGTTGAGGATGAGGGACCTGACTCCAGCTCATCATTCCCAGCAACACTGCAGGGGGCGCACTGCGAGGAGCGTCTTCGCATCGAGATCGTCAACCTGAGGGAGCAGCTGGCCGCCCGGACAGAGGAGGACGAAGTTTTAGAAGTGCAGCTGTCCAGTCTGAAGACGGAGACGGAGAGGATCCAGAGTCAGAAGGACCAGTTGCAGGCTGAACTGCTGGCCTGCCGCACTGAGCTGGACGCCCTGCGGTTGGCGCTGTCTCATGTGCAGCGCACCAACAAGACCCTCAGTGCTGACAAAGCaTCCATGCATCAACAGTGTCTGGAGCTGCGGAGCCAACTGATCAGCCTGCGCTCGCAGGTgGACACCAGCCAGACGGTCCAGATGGACTTCGTCCAGCTGTCCCAGTCGCTGCAGATGAAGCTGGAGGTAATTCGGCAGGCTGAGAGCATCGAACAAGTCAGGGAAATCCTGGAGGACGGAGTCAGTGAAGCTGGTTCCCtgcctgcagacgcttcg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03528	Rabaptin	Rabaptin	Coiled-coil	Interproscan
PF09311	Rab5-bind	Rabaptin-like protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003914	Family	Rabaptin	Interproscan
IPR015390	Domain	Rabaptin, GTPase-Rab5 binding domain	Interproscan
IPR018514	Domain	Rabaptin coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31179	RAB GTPASE-BINDING EFFECTOR PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-