Gene detail

Detailed information of HS20114 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20114	NUCLEAR BODY PROTEIN SP140	chr23	7622049	7631647	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20114

ATGGAGCCGATGGACTGGCTGAACGACGAGGAGCTGCTGCGGTTCTTCCGCCGCTGTAAAACCGAGATGTCCTGCATGGAGAAGCCGCACACGTTCCTCTGCCAGCTCCGGGACTACGAGCTGGTGCCGGAGGACCGATACAAGGTATGGAAGCGGGAAGGAACTGCATGCGTAATAACACTGCAATAACACAATAACAcggtaatacaactagtaggtggactgggaatgcagattctttcatttcaagaactttattgagcagttcagatattacaaagtacacagacatacaactaaagtcattaataagtaaagagtgaactgcttgaactttagtgtaaaagtttacgttatggcgttaacaacaggttactctgcgcatgcgcgacggcggagcttctcaatatgcgttcttgtgtacctctctgtacttgtgttctcgtgaactcgtgttacgtcatcaatcgcagcccgagtacatgttccaacgcaaagtccgaaacggccggtgacttgccattctccgtgacttcggcgttcctgctgttgcccttcaaaacaaaagctcaacattgagctttattgacagtggccgtttcaagcctgctaccccgttttaaaaagagttgtggaaagctaattttatcacacataataataaaacgtgatgactcacacatatctgcactcgttttgttttgcaaaggttgcacgttattgttgttttgaatgatatgcagtgtaaaactcaacaaaactctttattgccaaatatttgaagttgttttgtttagtttttcacatgttgcactgcattgttgttataaaattatattaaatgcaaatcaggctaattgcagccacaataagttcaatgttgcacagatagaactgtatttcttttctaataaagtgattgaaaacttgtattacttttctgtctgatggagcaatctggtttaggtgacagctatatatttattataagtaccataaccacaccaactagctaatctgttgggctgcacctattttgcaagctcaataagcttcttaTTTTTTACCAAAAAATGTGAATAACAGTAAACAGTGTTGTACATTTAAATGCATCAGCTGGAGAGCAAGTTATCTGTTCCTTGATCAATcTGAAAtaGagtgttttgaactgtaacatatgtcattattaacagtgaaaaacacggagatgtgacacaaactattgcttttctgaaaagatcctgtaaaagacaaggccaaaatgaatttgttttaaagtgtaatgataacagaccacttcatattacttataactcatgtttaaaatgttcattaagccacgGTGTTGTCATGCTCATCGTAAGATGTCTGAGTGGGGGCTACTGTTGATTTATTCTCATTTTCTCCATGCTTTTGTGTGTTTGCAGAAGGTGATTCGTATGAAGAGTAAAGACAACATACGGAAAGGTCTCTACGAGATCCTGGACTGGTTGGAACGAGAACGTCCCCAGAGCGTCCGAGAGTTCTGGAGCTGCGTCTTCAAGGACACCATCCACTATCCCACCCTGAaGCTGCTGCGCAACAGCCTCCTGGACGGTCAGTCGGTTTTATTGATTTTGATGGTCAGAGGTTTTAGTCATGAGGATTCTGCTGCTCACTATGTTTATGCTCTTTTGGTTGTTCAGGTGGTCGTTATTCCGCCTCACTGCTCTGAAGAGCTTCTGAGTGGCAATAAATGAACAGATGTCAATTTATAATACTTATATATCTCTTTATTTGGATATTCCATATATTGTTGTTAGGAATGATTcaatAAATAAATATGATTAACGCTACACGACCAATAGAAGGATCCAGATAGACTCCATtCTCTGTATCCGTTAATCCAGAAGACACAACTAGAGTTAAGGTTGTCCATTACTTTGAGATATTTGTTGTTGTTATCGTCTTTAACATgatatatatatatatttttttagggctgtcaatcgattaaaaaaatttaactaattaatcgcacattgtgaaattgcgattaattaatcgcgattaatcgcaattaaaagttaaaagttaaaagttcattctttttaaagaccaaacttcacacagagcttcaaagaggctcctacctataaagtgccagcgagatatttaatatcgtggatgataaattgtttcttcagtttcttcatcagattagtaaaaaaaaagaagtatattgagaccccattggtcctgtcatccttaacactgaacaacagcagaaccagtggccttggtaactgactgacattcacatatgtcacgttaaccctctggaggctgggctcattttatacattttacaaaaaaatgtcaatttaccttttaaaggcgtttgcatatgacacatacccatgtgttctacatcaaacattccagaacaatctcagctctctagtcaatgaggctcagttgcctggtgccatgttctctgctctctgactgacaggctgcttatgagcatcacgtgaggtgggaggtcctttgtgatttactgagtgttcattggttgttttttcgctaaatgttgacagacaaacggattgaccaatcacgttgaaggtttcgtgtgacgagttctttccgcgccgcgtcacccgacacgtcgcctccgttcctctgtgtatcagagggggagacgggaggaaggaggagcaggaggaaacccgactgatgcatccacgagtttaaactgatttctactccttattttcgcggagaaataattgttttaaaaacggaaacagtgttaaaccgtactgccgcggtttaaaaaaaaaaaaaattattataaaatattttagtgcgttaacacggccaaattaatcgcatagattaacgcgttaacgctgacagccctaatTTTTTTaAATGTCATTTAAATTGCAGGCTCTTTCCATTTTGACAAACAACCAGAAGAGACGGTGGAAACGGAAAAGTCAGACGAAGGGAAGAGGAAGGCGCTTTCTGgaggtgaggagggagaggagaagcaggagaACTCCGtgaagatgaagaagaagagaatactgagaagtagcgacgatgacgaggaGCCGGCCGGTCCATCATCTCAATCGATTCCCAGGAAGAAAAAGTCCAAAAAAATCTGCTTCTGTAAGCCCCTCCCCCCCACATACACACACAAAGAAGTTcGTCGCGTGGAACAAAGAGGTCAACGTATTATTTCAACGTATgATTTTCCTGTTCTGCAGCCTCTCCCCTGAAGAAGGGCGAGaAGAACCACATCTGGAGCTGGCCCATCTATAAGCTGCAGCTGCCCGTGACCTGTGGGGACCAGGCGGGGACACTGAATAGAAACCTCCTGGCTAAAGGTGTGTAAGACTCCAGGACTGAAGAACACATCGTCTCCTCTAACGAGTGAAGCGGGGCGGATGGTGACCGGTTGACATTAACGCAGCCTGTGAATGTTTCAGGGgAGAAGTGCATTGTGGTCGGGAAACGGTGGTTCACTCCCAGTGAGTTTGAGAGTTTTGCGGGGAAGAAGAGTTCCAGGAACTGGAAGGCGAGCATTCGCTGTCAGGACACCCAGCTGGGGAAGCTGATTCAGGTTTGCatttttcatttatttatttgttcagtttatttaCACCAACAAATAATGACTGAATCAAATGTTCAAATATGAGAGTGAATCTCAGACTGTTACTTCAACGTGTGCCTCGGGACGTGGATTTGTCGGGTGCGCCGTTCATTTTCTGTTTTGTTTCTTTCGCTGCAGGAAGGTCACCTGAAAACAGGAACGTACAAAGGAGGGTGCAGAAAGGTGAGAAGAACAACTGGTGAAAATACATGAAAAGATACATTCAGACTTTATGGTGCATCTTCTCGTCGTTCGTGATCCTGATCTGAGCCATGTCCCTTATTCTTCCTCGTGTTCCTCCTGCTAGGCCAATAGGTCACTGTTCCCGTCTGGTCACGCAACTGCAGGTTTGTTTTATTCGTGATTTtATAAAACTACAGGAAAATAGTGCTTGAATATATATACACGCTAATGTGTCAGAAAAACCAACATCCTCCTTCTGTTTTTCCTAGTGTCTgacgaagatgaagaagcaggagaagaagaagaagaagaaggagatgatgaagaagaaaaagaagaaggagaagaagaagaaggagatgaagaagaagaagaGGGCCGTGAGCTGAACGAGGGCGACCGCAGCAGAGAAAGCTCcGCAGCTGTCGCAGGTGCTGTTCTCTCCAAAGTGATGATCAGAGTTTTTTAAATGTAGCGTTGATCCAGACTTCCCGTGTGTCCACCTCAGGCGAGGCAGTGAGGAACCGGACCGAGCAGCCAGAAGTCGCCAGGAAGGTGTTCAGAGTCACGTGCCGCGGTGCAGCCGGGACTTTACACGCCAAGCGGTTCTCCTCAGGTAGCGATAACTCCTCCTCCTCCTcAACACGTGTCGTCGCATGTGTACCGAGCGGCTCACGCCTCCGACCACCAGGGACTTGTGGGAAGAGTATTCGCACTGAGACCAGCTGGATGACCCCGGTGGAGTTCCTGAAGGTGGCGTCGTGTCCGGCGGACGCCTCTTGGAAGAAAGAGATCCGGTGTGAAGAGGAACCGCTCAGCGTCCTCATCGAGGTGAACCTCGTCGGGCTGGTTGGAGGGATGCAATCGGAGAAAGTGGAAGCTGTAATCCCAAAGATTTCAGTCCTGTTTGATATTTTGAGTTAAATTTGAGCAGCTGGTGAATACGTGTTCTGGTCATCATCAATACGATGCATGGTGTCGATAATGACCACGACTCTATAACGATCAGGATGGAATGACGTCAAACGTCTGTTGTAGAAAAAAAAAGACAGACCATAAATCGACACACACTTTCCAGATTAAGTTCACACGATCACATCAGGCTGTTAGCCAGCATCGCCTCTCGAGGTGTTCCAGGTGCAGGAGGAGTGTCGGTCCGAGAAGGAAAGAGGTGAAGGCTTCAAACGCGGAGCAGAGACAGTATGTCGACTCCAGAAGGACATCTACCCCATCTTGGATTTAAATCCCCttcggggacataaacagggtttttcctgggtcaaaatgggtcttcggtgctcccactttttttttgttgcgagctgcgcgcaccgtctattccaacaggtcgggctgttgagtgagtgatcggcagctggccgctcggtccattcgcacacctcacagttgcgtattgatcagacaagtagacacgcttatcaactccagtgtttcccctactattataacagggtgaaatctccacccgccactctgtaattttcgtctctcccccccccccgtcaacaattctccgctcgcgcgacagagcgatgcgcgcgcccgcatcgaagctctgccgtgatgcgcgcacacgggtgagcacactctcaccaccaccccccgtcaacaactcatctcggctcgtgcgcgccagagctccgatgctggcgcgcgccatgctcaacggtgatgcgcgcacacaggtgagcGCACACCTCAGTGTTAAATTAAGCTCAGGGCACCAACATGGCAAgcggcactagtctcacccccctgatgctgtaaacctaggggaaacactgaactcgattactattgatcaaaacagaacgagggttcggctgtagccgacttgaaacatactattgagaacatattcgctgacatgcacgtgatgaacacaggttttattttttttattttttccatcgcagacttttttttgccttaggcgctcgggaaaacggcttaggcgcccacattttctctatgcaggaaaaaccctgCATAAGGGGTCATAAGAAAGTGAGGTTATTTAATTGACAGAGCAAAAGAAATGCTAGAAACATGGCGCTAATAATGCCGTGTCATGAAGTCGTTTGTCAGACACGACAACTAAAGATCGAGCCGCAGGATTTGTCAAGCCGTAAAAAATAACTATTTCAACTACGATTGGTCTCTTTCAGGCAAACGACTTGACGATCGACTCGCTGCTGTGCAAATGCAGTCGGTGCAAACCAGATGGCACCGAGCTGGTAAGCCCGTTGCTACGCACGTTCTGCATCGGCAACGTGCTGTCGACCGGAGCTGATGTTTCGCCGATGTTAAACGGTCCCCGTGGAGTCGTGTCGCCAGACTTGCTGTCGTGTGTCTGTCCCGGCAGGAGAATCAGAAGAACGATGACGAGTGTGGCGTCTGTAGAAGGGAAGACGAAGAcAAGTTGGTGATGTGTGATGACTGCCCTCGCTCCTTCCACCAGAAATGTCACCTGCCCCATGTGGAAGATGTCGATTTAGGGtgagctttgataaacggctatatacatatatatatatatatatatatatatatatgtgtctatattagggctgtcagcgttaacgcgttaatctatgcgattaatttggccgcgttaacgcacaaaaatattttaacgcaattaacgcaactttgtttacttctggtgttcgttgaagtttttacactgtttccgtttttaaaacaattatttctccgcgaaaataaggagcagaaacagagctgccaacttttcaaaaaaccttggagtgagattttgtcgggggtgaccaaaattttgccgcacactcagccacacacgttggtggctataatatcaggaaatttgaataaatttggcgttgtacccatgttgtacccatgttgtacccatgttgtacccatgttgtaccctgcattctggcctggcaaaggtcttttacgagacatctttgctcccttaaagaattaaaatgttttttaataactctactctcatttacaaaaacatgcctaattctattgcacaaatgtcctgtctttatgtaaaattctttataatacatcttacttgttcaaagtgctgttttgaaaatttttgagagggtccttttcctaggcctgcaaataaagtgataaatgctatgtgggcagccttaacaaacaatgctatgatgttttgagcatgcagtataccaagaggttaacaaggtgctctgctgcttgttatgacagctgagtttacatcaccacacaaaatcacacgcacaaacacaacgaattatttcaagatttaaagtttaagagagtgagaacttaattgaaccacatgtcattaacagggctcttaagttttgaagacaggcaagagtgacatatttatccaggatgctttattttcattggttgctggattaaatcttacccagataggttttttctgattgtgtagcccatttcttttttttgattggctgataagtggctcctcacagcagaactccaggggagcgcttgcttcctccacggtgagggcagcgcggccagctcatgttgaaggccatgcacattaaaacattaaatagccgagaggtttttcagcgtgagaaatacgatgtgtggcgggagtgcgtgacgtaagaccgaaatgcgtgactgtcacgctcaatgcgtgacacttgagagccctgcattaacacatgaaaatcttcttctgttgctgactccgggactctttggggtaaataggatgtctatgcagcgaataggtttatagatgcgctccttagcgccatctatcgtcgcggagtttgaaaagaaaccaacgcgccagtgttgccaggtccgcggttttcccgcagaattgggctacttttgaagtgttgccgcgggttgaattttgtgtccgctggttcgggtagacctttttttgcatgcaaattacatgaatatctttaaataaaaatccatattttaaatgaaataatttatttatacccaaatcctaccaaactgactccagatcagcacgtacacacatggacatggactttaaaagcagtgtatatggtttggcaagggcatattttgagttctgatattgggctggtttttgggctggttttattggccattgggctggttttgtcacacagacctggcaaccctgcaacgcgcctcgggccaaaatcagaatttcttttgccgtgagaaattggttgtgtggcgtgagagcgtgtgaaaacatgcaaaagcgtgtgtcacacggcgaaaccgtgagagttggtagctctgcagaaatcagtttaaactcgtggatgaatcagtcgtatttcctcctgctcctccttcctcccgtctccccctctgatacacagaggaacggaggggcgatgtgtcgggtgacgcggcgcggaaagaactcgtcacacgaaaccttcaccgtgatttgtcaatccgtttgtctgtcaacattttgcgaaaaaaacaaccaatgaacactcagtaaatcacaaaggacctcccacctcacaggtgaggctcattagcagcctgtcagtcagagaaccagaggacacggcgccaggacaactgagcctcatatatagagctgagattgttctggaatgtttgatgtataacacatggggatgtgtcatatgaaaatgcctttaaaaggtgaatttacatttttttgtaaaatgtataaaatgcccccagcctccagagggttaacgtgacatatttgaatgtcagtcagttaccaaggccactggttcttctgttcaatgttaaagatgacaggaccaatggggtctcaatatacttcttttttttttactaatctggatgtttcactgaagaaacaatttatcatccacgatattaaatacctcgctggcactttatatgtaggagcctctttgaaaacacagctctgtgtgaagtttggtctttaaaaagaaaaagaaaaacttttaatcgcgatttatgaatttcaaaatgtgcgattaattagttaaatatttttaatcgattgacagccctaatatatatatatactgtatatatatatatttatatacagtatatgtatatatattatatatatatatataatcgctgacctaagtaggctaacagtaCTTGTTAGTGGGGTTGATTTTGTGACAGAGAAATTCTCTTCATAATCTTTGATAATTGTCAGACCGTACATGattatttattgtgtgtgtgtgtgtgcgtgcgtgtgtgtctgtgagaacagagtcgacaGCCCGTGGATGTGTACTTTCTGCATATTCAgGAtCTATCAGGGGTGTTTTTACCAGGAGCTGGAAAGAGAAGCAGCCGTGTCGCTCCCAATATCCCAACACATGCTGGTGAGTAAACTGCGTGACCGTCTGTGTTGTGAAGCTGAAACACACTTGTTCATCTTGGTTGTCCGTGTTTTTATCtGTACGTCTGTTTCTGTGCATGTGTAAACACCGACTGCCAGAGAAGCTCAACCTGTCCGTCCCTCATCCCTCCTTCCTTACATCAACAGGAATGCCAGTATCTCCTTCTGTATCTGTGCACGGCTGATGAGGAACAAACATTCTCCGTGGACCCACGCCTCTACGTAAGTCCTCCCCCCCCCGTCCTCATGCACCGGCTAGCCGCTAAAGAGCACTCGATCATCTGGTTACTGGAGGACTCGGCGCCGCCGCTGTGGGCCCTGTTGaTTTTGGCGCCCGTGGTAAGAGGTATGGAGCCGATGGACTGGCTGAACGACGAGGAGCTGCTGCGGTTCTTCCGCCGCTGTAAAACCGAGATGTCCTGCATGGAGAAGCCGCACACGTTCCTCTGCCAGCTCCGGGACTACGAGCTGGTGCCGGAGGACCGATACAAGAAGGTGATTCGTATGAAGAGTAAAGACAACATACGGAAAGGTCTCTACGAGATCCTGGACTGGTTGGAACGAGAACGTCCCCAGAGCGTCCGAGAGTTCTGGAGCTGCGTCTTCAAGGACACCATCCACTATCCCACCCTGAaGCTGCTGCGCAACAGCCTCCTGGACGGCTCTTTCCATTTTGACAAACAACCAGAAGAGACGGTGGAAACGGAAAAGTCAGACGAAGGGAAGAGGAAGGCGCTTTCTGgaggtgaggagggagaggagaagcaggagaACTCCGtgaagatgaagaagaagagaatactgagaagtagcgacgatgacgaggaGCCGGCCGGTCCATCATCTCAATCGATTCCCAGGAAGAAAAAGTCCAAAAAAATCTGCTTCTCCTCTCCCCTGAAGAAGGGCGAGaAGAACCACATCTGGAGCTGGCCCATCTATAAGCTGCAGCTGCCCGTGACCTGTGGGGACCAGGCGGGGACACTGAATAGAAACCTCCTGGCTAAAGGGgAGAAGTGCATTGTGGTCGGGAAACGGTGGTTCACTCCCAGTGAGTTTGAGAGTTTTGCGGGGAAGAAGAGTTCCAGGAACTGGAAGGCGAGCATTCGCTGTCAGGACACCCAGCTGGGGAAGCTGATTCAGGAAGGTCACCTGAAAACAGGAACGTACAAAGGAGGGTGCAGAAAGGCCAATAGGTCACTGTTCCCGTCTGGTCACGCAACTGCAGTGTCTgacgaagatgaagaagcaggagaagaagaagaagaagaaggagatgatgaagaagaaaaagaagaaggagaagaagaagaaggagatgaagaagaagaagaGGGCCGTGAGCTGAACGAGGGCGACCGCAGCAGAGAAAGCTCcGCAGCTGTCGCAGGCGAGGCAGTGAGGAACCGGACCGAGCAGCCAGAAGTCGCCAGGAAGGTGTTCAGAGTCACGTGCCGCGGTGCAGCCGGGACTTTACACGCCAAGCGGTTCTCCTCAGGGACTTGTGGGAAGAGTATTCGCACTGAGACCAGCTGGATGACCCCGGTGGAGTTCCTGAAGGTGGCGTCGTGTCCGGCGGACGCCTCTTGGAAGAAAGAGATCCGGTGTGAAGAGGAACCGCTCAGCGTCCTCATCGAGGCAAACGACTTGACGATCGACTCGCTGCTGTGCAAATGCAGTCGGTGCAAACCAGATGGCACCGAGCTGGAGAATCAGAAGAACGATGACGAGTGTGGCGTCTGTAGAAGGGAAGACGAAGAcAAGTTGGTGATGTGTGATGACTGCCCTCGCTCCTTCCACCAGAAATGTCACCTGCCCCATGTGGAAGATGTCGATTTAGGagtcgacaGCCCGTGGATGTGTACTTTCTGCATATTCAgGAtCTATCAGGGGTGTTTTTACCAGGAGCTGGAAAGAGAAGCAGCCGTGTCGCTCCCAATATCCCAACACATGCTGGAATGCCAGTATCTCCTTCTGTATCTGTGCACGGCTGATGAGGAACAAACATTCTCCGTGGACCCACGCCTCTACGTAAGTCCTCCCCCCCCCGTCCTCATGCACCGGCTAGCCGCTAAAGAGCACTCGATCATCTGGTTACTGGAGGACTCGGCGCCGCCGCTGTGGGCCCTGTTGaTTTTGGCGCCCGTGGTAAGAGGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF01342	SAND	SAND domain	Family	Interproscan
PF03172	HSR	HSR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000770	Domain	SAND domain	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR004865	Domain	HSR domain	Interproscan
IPR010919	Homologous_superfamily	SAND-like domain superfamily	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR043563	Family	Nuclear body protein Sp110/Sp140/Sp140L-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46386	NUCLEAR BODY PROTEIN SP140	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-