Gene detail

Detailed information of HS20074 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS20074	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	chr23	6845516	6848219	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS20074

CAACGGTTAAGAAACAAGGCTCTTATTGTGAAGCTAAAACTTGGTGCTTTTATTGTGAAGTCCCGGAAGTGCGTGTTGGCGGCTCCACgCGGCTCTCTGTGCTCCGTTCTTTACGGCCCGGGAGCTAAGCTAGCTGAGAAGATGCCGTCGATTGAATACGACGAGTGAGTGGTTTTAAAGATATTAAATAATGTTCAACATATAGTGGAGGTTTCTTATCGATATAATATGTACTTTTAATATCTTCCCTGCAGCTCCAAGCCCAGCTGGGCAGACCAGGTCGAAGAGGAGGTAGATGAAGGTAAATAAGTAAAGTCGGCTCGCTAAAGCTACATGTGTGGTGTCCGCGGGAGGAGGCCGGAGAGGCGGCTTCCTCCTACACGTGGTGGTTGGaCGTATAACTCGAGATAAAATACATGCGTAGCAAGATGTGTTGGGTATCTTATGATTAAAAGGTTTGATTAATACGTTTGACTGAATGACGTAAATACCAAATGTATTGATGAAACGTGTCGCTAACCGACACATGTGACGTAGGCGGCGTCATTGACCGGTAACGTTATGGTGCTAAACGTTAGCaAGCTATCGGTaTTACTGGCTTtatatatatatatatatatatGTCCGTCTATGTTCTGGGTTAATTAGTAATGAGACATGATCAAGAGATGAAGTGGCGTCTGTTTATTTTTTATCTGACAAACACAATCTGAAGTCAGTAGGGAAAACTTTGTTTTTAATTTCTCTGAATCTAAGTTGACATATTATTTATTTTGTCAGGCACACTACCACCTCCCAAGGAAACCGTCAAAGGCAATATAAAAACTACCACGGAATATAAAATAGATGATGATGGAAAGAAGTTAAAGGTAAGTTTTAACTAAATATTAAATATACACTTTTTAGTGTTTcCTAGATGGCTGCATTGCATGTGTGCAGCTTTAAAAGGGTTTAGAATATATCTTTTTTTTAGTGGATGTAGTTTGGCAAAGAGGCGTTTCTTTGTTCTGTCAAACGCCAGTATTGGGGAACTAATCTCACTATGCTTGAAGTTTTTCCTTTAAAAGAAGAAATTGTaCAGATGTCAACCCTgTTTACATTTGTCTTGTAACACTGTAAAAGCCAGAGATGTTGTCATACCCGGGTCTGTTTAGCGTAGGTTCTCTGCCACACATTTGCATTAATAAAAGTAACAACAGAAGAAGAAAAACCGTGAGGTTGACAACAGCACCAGAGTATTTGGTACATATTAAATATTTGGGCATTTTTTTCTTTTGTGTAATTTCTGCCCACTTGTCTTCCTAGATTGTGCGGACTTTCAAGATTGAGGTACGGAAAGCCTCAAAAGCTGTTGCCAGGAGAAAGGTTTGTTTTGAAATTGAATTTAGTTTTATTCaGTGAAATTAAGACTTTGGGTAAAATCGGGCGTCATGTATTATATTTTTATCTCATTTCAGAACTGGAAGAAATTTGGCAACTCTGAGTTTGATGCAGCCGGTCCTAATGTTGCCACCACCACAGTCAGTGACGATGTCTTCATGACTTTTATCTCCAGCAAGGAGGTGAGGATCCATTGGGACAGTTTAAATAGTTATCTCTGCATAATACATAGACAGTTTGTGCTCTGCTTTGTGTACTTTGTGACTGAGTACCCTATCTGACCTCaTGCAGGACTTGAACGCCCCAGACCAGGATGAAGATCCCATGAACAAACTGAAAGGACAGAAGATTGTGTCTTGCCGTATTTGCAAAGGCGACCATTGGACCACCCGTTGTCCGTACAAGGACACCCTGGGCCCGATGCAGAAGGAGCTGGCTGAACAGCTTGGGCTTACCACCGGAGACACGGCCAAGCCCCCTGGCTCTGGTACCATCAGCTCACCGTGCACGATTTAGATTTGTTTCTCGATTGGCTGGCCGTTCCTTAAAATCTGACCGATGTGGCCCGCTCTGCTTCTTTCACCAGGAGAGCCAGAGCTGGCGCAGCCTGCGCAGAGCAAGACTGGGAAGTATGTGCCCCCGAGTCTGAGGGATGGAAGCACGCGCAGAGGGGAGTCCATGCAGCCCAACaGGCGAGGCGGGTGTAAGTTGATCCTCCTCCTCATCCtCTGCACTTATTCTTCACTTGATTCATTGTCCaGTAGCAAGAGCATTGCTCAGAATAAACAGCACGTGTATGCgTTCAACAGCGGATGACAACGCCACTATTCGTGTGACCAATCTGTCGGAGGACACGCGCGAGACTGACTTGCAGGAGCTCTTCCGACCATTCGGCTCCATCTCGAGGATCTACCTGGCCAAGGACAAGAACACAGGCCAATCAAAGGTCAGTGTTCATCTGAAGAATAGTGACCTaCGAATGGATTGTTTAAGGCATAAATACAACTCTGAAAGTATTAAAGCAGGCGTTCTTTCACGAGTATATTGTAGACATCATTTGTAACGTggtATGTTGACTGGTGTTTTCTGCCTGGTACAGTTGTTAAACTACTGTGTGTCCTGCAGGGaTTTGCCTTCATCAGTTTCCACCGACGAGAGGATGCATCCAGAGCCATCGCAGGAGTGTCAGGATTCGGATATGATCATCTTATTCTCAATGTTGAATGGGCCAAGTAAGTTAGTCCGCTCATCGTTGAAGTCTgTaTtTTTTTTGTTTtGTTCTTGCTGCCAACCATATTTATTTCTCTGCAGACCGTCAAACAACCAACGGTTAAGAAACAAGGCTCTTATTGTGAAGCTAAAACTTGGTGCTTTTATTGTGAAGTCCCGGAAGTGCGTGTTGGCGGCTCCACgCGGCTCTCTGTGCTCCGTTCTTTACGGCCCGGGAGCTAAGCTAGCTGAGAAGATGCCGTCGATTGAATACGACGACTCCAAGCCCAGCTGGGCAGACCAGGTCGAAGAGGAGGTAGATGAAGGCACACTACCACCTCCCAAGGAAACCGTCAAAGGCAATATAAAAACTACCACGGAATATAAAATAGATGATGATGGAAAGAAGTTAAAGATTGTGCGGACTTTCAAGATTGAGGTACGGAAAGCCTCAAAAGCTGTTGCCAGGAGAAAGAACTGGAAGAAATTTGGCAACTCTGAGTTTGATGCAGCCGGTCCTAATGTTGCCACCACCACAGTCAGTGACGATGTCTTCATGACTTTTATCTCCAGCAAGGAGGACTTGAACGCCCCAGACCAGGATGAAGATCCCATGAACAAACTGAAAGGACAGAAGATTGTGTCTTGCCGTATTTGCAAAGGCGACCATTGGACCACCCGTTGTCCGTACAAGGACACCCTGGGCCCGATGCAGAAGGAGCTGGCTGAACAGCTTGGGCTTACCACCGGAGACACGGCCAAGCCCCCTGGCTCTGGAGAGCCAGAGCTGGCGCAGCCTGCGCAGAGCAAGACTGGGAAGTATGTGCCCCCGAGTCTGAGGGATGGAAGCACGCGCAGAGGGGAGTCCATGCAGCCCAACaGGCGAGGCGGGTCGGATGACAACGCCACTATTCGTGTGACCAATCTGTCGGAGGACACGCGCGAGACTGACTTGCAGGAGCTCTTCCGACCATTCGGCTCCATCTCGAGGATCTACCTGGCCAAGGACAAGAACACAGGCCAATCAAAGGGaTTTGCCTTCATCAGTTTCCACCGACGAGAGGATGCATCCAGAGCCATCGCAGGAGTGTCAGGATTCGGATATGATCATCTTATTCTCAATGTTGAATGGGCCAAACCGTCAAACAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF12353	eIF3g	Eukaryotic translation initiation factor 3 subunit G	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR017334	Family	Eukaryotic translation initiation factor 3 subunit G	Interproscan
IPR024675	Domain	Eukaryotic translation initiation factor 3 subunit G, N-terminal	Interproscan
IPR034240	Domain	eIF3G, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-