Gene detail

Detailed information of HS19946 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19946	NERVE GROWTH FACTOR NGF -RELATED	chr23	3709171	3710871	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19946

ATGCACTGGCTTCCCCTGGTTGCCATGGTGATTGCCTCGGCCCTGCCATTCCCCCACGACCCCGTGTCCAGGATCGCCGCCGCGACGACGTTGACGGAGTCCGGATCCGACGACGCGGCCGCTCGCCTCGCAGCTCCCACCGCCGCCGCATTCCACGACTTCCACGGAAATGcctcctcctcctcttcctcctcctcctccGCGTTCGGCCGACACGCCAACAGACAGAACCTCCGGAACCGCAGGGAGCACCTGAAGTCCTCCGCGGACGAAGGGGCGCCCTTGCTCAGGGGGGAGCGGCGAGGAACCCACCGAGCGAAGAGCAAGTCGGGCGGCGGCGACGAACGCAGAGACGAACCCGGCGTGGACGTCCCCACGGAGAGAGGGACGCTCGGGGCCGAGGATCCTCCCCGGGACGAACCTCCGCCGAAGGACTTGGAAGCAGACGGGCGAgactccgtcatgtctctagacacgaaggactccttcaggtctctagacacgaaggactccttcaggtctctagacacgaaggactccttcaggtctctagacacgaaggactccttcaggtctctagacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctagacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctagacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctagacacgaaggaATCTGCGGCGGAAAGACTGCCGTCGGTTTCTGCGGCGGGAAGCCAGATTGCCGTCAGCCTGAGGGGTCAAAGGGGACCGTGTCCCACGGCGCCCTCGGAGGAGCCGAGGGGCGCGCCGAGGATCGGGACCACGTGGACCGCGGGGCCGACGGAGGAGGCGGGGCTTAGCACGGGGCTGGACGAGATGTTTCTGGACGCGCATCCGCGGGTCCTGTTCTCGCCCTCGCCGTCGCCGCCGGAGCACCCGCCCCTCCTGCTCATGCTGGAGACCGGCCTGCTGGAGGAGGACCGGGACGCCGCCGCGGAGGAGCAGGAGGACATGCACATCGAGGGTCACGGGGACCGCGCGATCGACAGGACCCCGAGCTGGGCGGACTCTCCGGGCGCCGTCGGGGTCGCCCGTCTCGCCAAGCGGGACAAGCGCTCGCACTCGGTCGACCGGCGGAGGGGCGAGAAGTCGGTGTGCGAGTCGGAGAGCGTCTGGGTCACCGACAAGAAGACGGCGGTGGACTCCCACGGCCAGAAGGTCACCATCCTGCAGGAGATCCAGACCCAGACGGGCCCGCTCAAACAGTACTTCTACGAGACGCGCTGTCGCGAGGCCGAGCGGCGGGTCAAGGGCAGCGACGGGCGCTCGAGGTCCGTCGGGACGGGCGTGGCCGGCGCCGGCTGCCTGGGCGTGGACAGGAGGCAGTGGGTCAGCGAGTGCAAGGCCAAGCAGTCGTACGTCCGGGCGCTCACCAAGGACGCCAACAACCGGACCGGCTGGAGGTGGATCCGCATCGACTCGTCCTGCGTCTGCGTCCTGCTGTCCAGAGCCAATCAGGCGGCGGCGGCGGGGAGGGAGGGCTTGACCAGGAATGGGAGGATGCACTGGCTTCCCCTGGTTGCCATGGTGATTGCCTCGGCCCTGCCATTCCCCCACGACCCCGTGTCCAGGATCGCCGCCGCGACGACGTTGACGGAGTCCGGATCCGACGACGCGGCCGCTCGCCTCGCAGCTCCCACCGCCGCCGCATTCCACGACTTCCACGGAAATGcctcctcctcctcttcctcctcctcctccGCGTTCGGCCGACACGCCAACAGACAGAACCTCCGGAACCGCAGGGAGCACCTGAAGTCCTCCGCGGACGAAGGGGCGCCCTTGCTCAGGGGGGAGCGGCGAGGAACCCACCGAGCGAAGAGCAAGTCGGGCGGCGGCGACGAACGCAGAGACGAACCCGGCGTGGACGTCCCCACGGAGAGAGGGACGCTCGGGGCCGAGGATCCTCCCCGGGACGAACCTCCGCCGAAGGACTTGGAAGCAGACGGGCGAgactccgtcatgtctctagacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctggacacgaaggactccttcaggtctctagacacgaaggaATCTGCGGCGGAAAGACTGCCGTCGGTTTCTGCGGCGGGAAGCCAGATTGCCGTCAGCCTGAGGGGTCAAAGGGGACCGTGTCCCACGGCGCCCTCGGAGGAGCCGAGGGGCGCGCCGAGGATCGGGACCACGTGGACCGCGGGGCCGACGGAGGAGGCGGGGCTTAGCACGGGGCTGGACGAGATGTTTCTGGACGCGCATCCGCGGGTCCTGTTCTCGCCCTCGCCGTCGCCGCCGGAGCACCCGCCCCTCCTGCTCATGCTGGAGACCGGCCTGCTGGAGGAGGACCGGGACGCCGCCGCGGAGGAGCAGGAGGACATGCACATCGAGGGTCACGGGGACCGCGCGATCGACAGGACCCCGAGCTGGGCGGACTCTCCGGGCGCCGTCGGGGTCGCCCGTCTCGCCAAGCGGGACAAGCGCTCGCACTCGGTCGACCGGCGGAGGGGCGAGAAGTCGGTGTGCGAGTCGGAGAGCGTCTGGGTCACCGACAAGAAGACGGCGGTGGACTCCCACGGCCAGAAGGTCACCATCCTGCAGGAGATCCAGACCCAGACGGGCCCGCTCAAACAGTACTTCTACGAGACGCGCTGTCGCGAGGCCGAGCGGCGGGTCAAGGGCAGCGACGGGCGCTCGAGGTCCGTCGGGACGGGCGTGGCCGGCGCCGGCTGCCTGGGCGTGGACAGGAGGCAGTGGGTCAGCGAGTGCAAGGCCAAGCAGTCGTACGTCCGGGCGCTCACCAAGGACGCCAACAACCGGACCGGCTGGAGGTGGATCCGCATCGACTCGTCCTGCGTCTGCGTCCTGCTGTCCAGAGCCAATCAGGCGGCGGCGGCGGGGAGGGAGGGCTTGACCAGGAATGGGAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00243	NGF	Nerve growth factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002072	Domain	Nerve growth factor-related	Interproscan
IPR019846	Conserved_site	Nerve growth factor conserved site	Interproscan
IPR020408	Family	Nerve growth factor-like	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11589	NERVE GROWTH FACTOR NGF -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005163	Molecular Function	nerve growth factor receptor binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0007169	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007422	Biological Process	peripheral nervous system development	Interproscan
GO:0007613	Biological Process	memory	Interproscan
GO:0008021	Cellular Component	synaptic vesicle	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0021675	Biological Process	nerve development	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0030425	Cellular Component	dendrite	Interproscan
GO:0033138	Biological Process	positive regulation of peptidyl-serine phosphorylation	Interproscan
GO:0038180	Biological Process	nerve growth factor signaling pathway	Interproscan
GO:0043524	Biological Process	negative regulation of neuron apoptotic process	Interproscan
GO:0045664	Biological Process	regulation of neuron differentiation	Interproscan
GO:0048812	Biological Process	neuron projection morphogenesis	Interproscan
GO:0050804	Biological Process	modulation of chemical synaptic transmission	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-