Gene detail

Detailed information of HS19944 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19944	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	chr23	3661127	3667228	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19944

atgatcatcgattacagaaggaagaaaactgtcatccagcccctgtacattgacggggactgtgtggagagagtctcggtcttcagattcctgggcgttcacctggctgaggacctgtcctggagaaccaacaccacggcgatcgtcaagaaggcacagcagagactctacttcctgagaatactcaggaattaccacctcagacaggatctgcttgtgtccttctaccgctgctccgtggagagcgtcctcacctattgcatctgcgtgtggttcctcagctgcacagccgcagagaggaacgcgcttcagagggtcgtcaactcggcccagaagatcatcgggtgccccctcccctccctgcaagaactatacagctctcgctgccttaagaaggcagtcaagatcctcaaggatccatctcacccgggcaacgaacactttgtacggctgcgctcaggcaggcgcttcaagactatgtatacccggaccaacagactcaagttcagcttctttccgagggccataagcgcactaaacGCTGCTAAGTTTTTAGAGAGTCAAATGTCGCATCCCCGTTCAATATGAGGAATCGTGCAATAAAAACTTAGGTTTACACTAAGAAATATGCCTAGTTTACATACGTAGTTTATTATACTTATTTTTATATTTATATTTACATCCATAGATCTCATTTATACTTATGTATAGTTCCCCTATGTCTATTTATGATTCATTCTGGTTtttatattgtcttgtttatattgtcttgttGTTTTTATATTGTCTATTGTCCTATTAGCACCTTGGGATTGCATCTAAATTTCGTTGTTCCTTTGCACAATGACAAATAAAGATCATTCATTCATTcataaatgatgccgtgaagaaccttttttaaggttctttaagacacctttatagggtctttgacgaactatttaaggaaccctgcatggcttgaagggttctttgaggaaccaaatagggtgccttagagaaccatttcttgaaggttctttgagacaccttttcggttatttgaagaactctttaaggaaatggttctttaaagaaccctggtttgaaaggttctttgtggaaccataaatggttcttcaatggcatcactctaaagatccattttcggttcctgaaggcacctccattgttctgtgtgtaACTGTGTTGAGCGACCAGAGAGGAGAACCGTCTCTCTGAAACTCCTCCCCCTCCCAGGTCCAGACGGTGCCGGTGGCGCCGCCGAACCAATCCGAGCTCATCATCGTGAGCCGGAAGAAGCTGGAGTACAAATGGGGCATGAACGTCCTCGGTGAGTGGAGCGGCCCGGCCTGTTCTCCTCCTCTTCCTCCTCTTCTGTTTTCCCCGGTGACGCGTTGCGTCTCCTCCCGCAGGCCTCATCGGCTTCTTCATCACCTTCGGGcTCTGCATGAGCCGGATGGGCGAGCGGGGGAAGGTCATGTGCGACTTCTTCATCATCCTCAACGAaATCATCATGACGATGGTTTCCATGATCATGTGGTCAGTGTCCCGCCCGCCgtgtgtgtgtgtgtgtgtgtgtgGTCGCTCGTGAGGAGGAAACCACACACGGAGGTCATGTGACAGTGATGGATAAGGCGTGGACGGCGTGTTGTGGGAAcCCGGGGCCGACGAagaggagcgaagaggagcggaaagagggagaaaaagagtgtttagtgagggacacggacagatggaaagagagagagagagagagagatagagGGTTTCCCTGGCACATGCTGGAGTCTGTGGTATGCCGGGGGAGTAGCCGAGAGTCggggggcccggggggggggggggggggAaACATCTCCAAAATGTAATGGATCCGCAGACGGAGCCCGAGGAGCCACTTGGCAAAAAGCAGATGCCTCGGCGGgAAGgacggcagacgtgaaaagatgcatgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggccttgacgctccgcaggaccacgaggctgagAAAGACAGAGTAGGGGGGGGGGGGGGaTGCTCtcGTGGACGTCTGCGTGTGCAGCCGGACGCCGGTGAAGGAATGGCGTCCCGCTCCGCAGAGTAAACAGATAACTCACGGGGCGCCAAGAACGCCGGAGTCCAGTGTACACAGAACACGCCGCGCACGGAGAACATCCATCAGAACCCTGCAACCGGGGGGGGGGCGCTCACTTTGACTCCAttctccttcttcttcttctcctttttcttgttcttcatcgtctccttcttcttgttcttgatctccttcttgttcttctttgtcatctacttattcttgttcttcttcatattgttgttgttgttcttcttcttcattgtcttcttgttatttttgttcgtcttcttcttgtgtccctattgttcttcttctagttcttcttgttcttgttcttcatcgtcttcttttcgtgttctccttcttgtgttcttctcatttttcgtcttcttgatcttcATAGGAGGAGGCGGAGGTGTGGTGGTggGGGggGGGGGACAACGACTCAATTCACAGCGCTGGAGAACAACTGCACTCCGGAAGGGTTGGGAACCAGAGATCCCAGAACCCGTCCCCTCGAGCCGAGACGCCGATGAAGACGTGGAGCTCGATTTAACATCTCGTCCTCGACCGATAATCACTTCCAGGTGTGGAGATGTGCTCTGACTCCTCCCCCCCCAGGTACTCCCCCGTCGGCATCGCCTCCCTCATCGCGGGGAAGATCGCGGCCATCGGGAAGCTGGAGGTGGTGGCGCGGTGAccgtcgtggtcggcctgctgaTCCACGGCGGCTTGATCCTGCCCGCCATCTTCTTCGCCATCACCAGGAAAAACCCGTTTACGTTCTACCAGGAGATCTTCCAGGCCTGGATCACGGCCCTGGGCACCGCGAGCAGGTAGgacgcggagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaacacatgtctcTTCTCTCAAACATCTATTCCCTGGAGCAGCTGTCGTAGCCGCTGTGATTGATTGCCGTTCAcCTGCCGCTAGTTCTGCAGCTCGATCCGGGGTAATAAtcttgactcggcccggcccacctcggtcttgactcggtccggcccggctcggcccggatcggctcggcccggctcggtcttgactcggtccggcccggctcggctcggcccggatcggctcggctcagctcagcccgcctcggtcttgactcggtccggcccggctcggcccggctcggttcggctcggtcttgactcggcccggtccggcccggctcggttcggctcggtcttgactcggcccgttccggcccgacccgggctcggctcagcccggctcggcatcgCCCGCTGAAAGCAGCTGTGGGTCGGTCACATGACTTCAGGCCTTTAATCCATCAACGTGTTCCTCTCACTATATTCTGGCCTCAGCTCAGAGGCCAGAATCAGATTCCTTTCATTCTCCTGTCGGGAGGATCGCAGCCGGCGGCAGCTGCCGGGAGGCTGTCGGCCGActccacccgactccagtgtctccacccgactccagtgtctccacccgactccagtgtctccacccgactccagtgtctccacccgactccaCCcttcatctctgtctcctttttcttgctcttcatcgtctccttcttcttgttctttttgttcttcttcatattgttgttcttcttcttcttcattgtcttcttcttgttatttttgtttgtcttcttcttgtgttcctattgttgttcttgtttttcttctcgttcttcttcttgttcttccacatcttcttcttttttccatcttcttcttctccttgttcttcttcctgtttttcttcctgttcttcttattcctcatcttctccttcttcaccttcttctccttattccccctcTCAGTGaAGGAACGTTGCCCGTCACCTTCCgCTGCCTGGAGGAGAATCTGAAGATCGACAAGCGCGTGATTCGCTTCGTGCTGCCCATCGGCGCCACCATCAACATGGCGGCCATCTTCATCGCCCAGATGAACGACATCTCCCACTCAATGACCACCAAGTATGAAGCTTCACAAACTATTTGTTGTCTATGTTTTAAGAAGATAAGGAAGACACAAATCACAGACTTTGAaaagtctgcattctctctcctgaccaccacggggccactcctgtggttgtatagaagtctatgcttcatgtgttaaagctgcattctctctcctgaccaccacggggccactcctgtggttgtatagaagtctatgcttcatgtgttaaagctgcattctctctcctggccaccagggggcgacttctctggttgtatagaagtctatgcttcatgtgttaaagcttcattctctctcctggtcaccacggggccactcctgtggttgtatagaagtttatgcttcatgtgttaaagctgcattctctctcctgaccaccagggggcgactcctctggttgtatagaagtctatgcttcatgtgttaaagctgcattctctctactgaccaccaggggcgactcctctggttgtatagaagtctatgcttcatgtgttaaagcttcattctctctcctgaccaccagggggcgactcctctggttgtatagaagtttatgcttcgtgtgttaaagctgcattctctctactgaccactagcggccgactcctctggttggatagaagtctatataaattacttctctcttgatttaatctcaatctcttgtttcaagtcttcttctatacagcatgatgtcatcatttagtacatgatggtcctttggagtcacacagaccataaagcaggggacgctttaggggcggagctacaaggtgattgacaggttgctgccaCCATCTTGGTTCCTGAGACATTTAACACGTGAAACGATTCACTCCGTTCTTTTTATCCGGTCACATAACGACTCACATCGTGCCATTGTCTTCACGTCCCTTTGTCGTGGATAAAGTTGTCGCTGTGGTGTTAACCCTGTAAATCCGTGTTAATCCTGCAGGCGGTGACACCGGTGCGATAACACGGCGAGGTACGAAGGGATTAAATTTATTCCGACAGTCCGATCTCTCGCATGCTGCATATGTGAGTTTCGTGTGATTGCTGCTGGATTAAAACCTGCTTCTTTTATCTAATATTTCTCGATGCATCCTCGCGCCTCATTACTCAGCTGGCGGATTCCCCCTTTTAATCGAACCTCGAGCGCTATCCGAGCCCTCGAGGGCCCGGACACGCCAAGAGAAGTTGGACTAATTGCGTTTATTGGCAGACGCTCGTCTGACTGAGAGAGTTCACTCGGCAGCTGGTGGAGAATCTGTGGTTTCCAGCATTGAGTCTGGTTTCTTTTAGCTTTTATCAAACATACCCTCCTTTTATTATACAAGTGAGTTATGACCAATGTTAACACCACTAAAGCCCCCCATCCCTccattaatgtgtgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgagcttacaGCGGAGGATTTCCCCTCGGGCCTCAATAAAGCATGTCTTCTTCTGATTTGACAAACACAAATTACTTAACTGCGTCTGACTTGTTTGTTTTCTCGTCTGTGTTCTTTTATAATTTGCACTACAGGCCATAATGGTTTCCTCTCACGCATGTTTGGAACTAATACGTGCCGccgcctccttcccgcctccttcccgcctctttcctgcctTTTTTTCGCGGTGCGTTCAAGTGCGCAGCGTCTCCACAAAAAGTTGCTCGCCGATGTAAAGCCTGTGACTGTACCTCCTGTGTTTGCGTCAGAGCACTTTCTCAAGACTGATATGTTGCTACCCCCCCCCCccacacacacacacacacacCCCTCCCCAGTCTGACTGCCACCCTGGCCAGTGTCGGAGCCGCCAGTATTCCCAGTGCCGGACTGGTCACCATGCTCCTGATCCTGACGGCCGTGGGGCTTCCCACGCAGGACGTCAGCCTGCTCATCGCCGTCGACTGGCTGCTGTGAatgatcatcgattacagaaggaagaaaactgtcatccagcccctgtacattgacggggactgtgtggagagagtctcggtcttcagattcctgggcgttcacctggctgaggacctgtcctggagaaccaacaccacggcgatcgtcaagaaggcacagcagagactctacttcctgagaatactcaggaattaccacctcagacaggatctgcttgtgtccttctaccgctgctccgtggagagcgtcctcacctattgcatctgcgtgtggttcctcagctgcacagccgcagagaggaacgcgcttcagagggtcgtcaactcggcccagaagatcatcgggtgccccctcccctccctgcaagaactatacagctctcgctgccttaagaaggcagtcaagatcctcaaggatccatctcacccgggcaacgaacactttGTCCAGACGGTGCCGGTGGCGCCGCCGAACCAATCCGAGCTCATCATCGTGAGCCGGAAGAAGCTGGAGTACAAATGGGGCATGAACGTCCTCGGCCTCATCGGCTTCTTCATCACCTTCGGGcTCTGCATGAGCCGGATGGGCGAGCGGGGGAAGGTCATGTGCGACTTCTTCATCATCCTCAACGAaATCATCATGACGATGGTTTCCATGATCATGTGGTACTCCCCCGTCGGCATCGCCTCCCTCATCGCGGGGAAGATCGCGGCCATCGGGAAGCTGGAGGAGATCTTCCAGGCCTGGATCACGGCCCTGGGCACCGCGAGCAGTGaAGGAACGTTGCCCGTCACCTTCCgCTGCCTGGAGGAGAATCTGAAGATCGACAAGCGCGTGATTCGCTTCGTGCTGCCCATCGGCGCCACCATCAACATGGCGGCCATCTTCATCGCCCAGATGAACGACATCTCCCACTCAATGACCACCAATGTCGGAGCCGCCAGTATTCCCAGTGCCGGACTGGTCACCATGCTCCTGATCCTGACGGCCGTGGGGCTTCCCACGCAGGACGTCAGCCTGCTCATCGCCGTCGACTGGCTGCTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00375	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan
PF09004	ALKBH8_N	Alkylated DNA repair protein alkB homolog 8, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001991	Family	Sodium:dicarboxylate symporter	Interproscan
IPR015095	Domain	Alkylated DNA repair protein AlkB, homologue 8, N-terminal	Interproscan
IPR036458	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan
IPR050746	Family	Dicarboxylate/Amino Acid:Cation Symporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11958	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005313	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0015175	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0015501	Molecular Function	glutamate:sodium symporter activity	Interproscan
GO:0015813	Biological Process	L-glutamate transmembrane transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0070778	Biological Process	L-aspartate transmembrane transport	Interproscan
GO:0098712	Biological Process	L-glutamate import across plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-