Gene detail

Detailed information of HS19941 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19941	SUBGROUP IIII AMINOTRANSFERASE	chr23	3620711	3628758	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19941

CCGTGTTTGTTTCCACACGGACTCCTTATCGCGACTTGTCATTTCTACGTCGCGGAGATGGCAGCGCTCCGAACGGTGAGTTCACTGACCGTTTGTTTATCACTGTTCGCGTGGACCGTCCCGGTCAGCGGGTCACTCCGCGCGATAAGGACGACCATAAAAACATTAACTGAGATAATCGCTCAGTTTATCTCCGGAGGACCAAGTGTTgTCAAACAACGCGGCGGGGAAAAGGTCATCAAGCCGGGACCGCGGGGACGAATGTGTGTGAATTTAAACAGTCTTGTTTACCTGAATCAACAACAACAACAaAAGCGTCGTAAAAACTCATCTCGATATCTTCGCGGTGACGTGTCCGGCTGGCTGACGTCCAGTGAGCAAATTATACTTTAATGTATGATTTAAAGTTACCAACTAGGTCATATTTATGCTTTAATTGAGTCCCTCACATCGCTGCTGCTCCTAGTTTTATTGTTTATCTTTTAAATTTCTATTTACTCGCTTTGCTATTTCTATATATTTGTTCACTGTGAGTCCAAATACAATTAAAAAAACAAATGTCACGAGGTGCAGGTCACAGACCTCACACTAATATTTGATGATTAACTCCTCTAACTTATCGTTGCCCCAAAAACGTTTATGCTGTTGTCATATTGTTGGCATCAACTCTGCTAACAACTGCCATTGTTATCGTCATCTTCATCTTCACTGCCAACAGGGACAGGAACCAACTATataataataataataattataataataatgcattaaatttggatagcgcttttcgaattacttaaagacacttaaaatcacataattaaaacatcctagaagttatacaatagaaTAAAGGCAATAATTGCCattattattattattattatcattatttttGGTGGTTGCTTTTTTTGGGGTCATATGAACACACACAGGATTTATTCAACTACTTCCTTAAACCTTGCATtcctcactttgtagcctggagttacagtgacacacacacacacacacacacacacacacacacctgttactggcagaatgactggagtcacacacaCGTCATGACATGTTGTCCCTTTGTTCCCCTCCCgcCcTCCCAAGGCCAGATTAATTGTGGTTCCCTGAGAAGACtatatgtatatatatatatatatatacacatttgtatTTTGAAAAAAAGTTGTCaGGCAAATACTTGTAACTAATAACAATAATATAAATACATGTTTTATTAAAGTGTTTGTTTTTGCAGGCACTCCATGGACGCCTGGTTCAGGCCCTCCCCCTGTCCCTCGGCGGGGTCCGCTCCGCCAGCTCCTTCAAGGTAATGAGGAGAAACATTCACACCTGACCCACCAGGTGAGGCGTGAGGTCATCGCCTCCAGCTCCAGTTCCGACGTGTCGCAGCTCGCTCCGGCGAGCGGGAAGGGACACGCGCCTCATGCTGGAGATTAAAGTTCctcccccgctctctctctctctctctctctccatctctctctctctctctctctccctctctccctcGGCCTCTTGTTCATatttaattacagtttaatttaattaattGTCTCAATCGACCAGATGAGTCGACCGACTCTCGCGTAACGTTCAGGGACTGTTTGTTCAAAGCAGAATATCGGAGATTTAAAAACAATCAATGTTTCCGTGGCCGGCTCTCGTCCCGTctctttctcctcttctattctactcttctccttctttccttctctcctctcctcccctcctctacttctctcctactctcctctccttctcttctcaccttctccacgcctctccttctttcctcttctcacctcctctcctcctctacttctctcattctttacttttcttctttcctcttctccttattttcttctttcctcttttctcctccttctcctctcctcctcctccgcctctacttctctccttcttccctcttctccttattgtcttctttcctcctctcctccgcctctacttctttccttttcttctttcctctcctctcctcctcctcctcctcctcctccccctcTAGGCGTCTGACCTGGTGGTGGAGCGCAGCGCCTCCTGCGGGCCGAAGCCCGACCCGTCCTCTCTGGTGTTCGGTAAACATTTCTCGGACCACATGTTGACCATCAGCTGGTCGGCGGCGGGCGGCTGGGAGGCGCCGCACATCAAACCGTTCCAGAACCTGTCGCTGCACCCGGCCAGCTCCGCCCTGCACTACTCCATCGAGGTGAGGAGCCGGCAGGGAAgttgttgttgttgttgttgttgttgttgttgACAGTGGCGTGCGCTTCGTGTCCGCAGCTGTTTGAGGGCATGAAGGCGTTCCGCGGCGAGGACAACCACATCCGCCTCTTCAGGCCGATGCTGAACATGGAGAGGATGCACCGCAGCGCCCACAGGAGCAGCCTGCCCGTGAGCGCATGCACccttcagtgacctttggtgaccttcagtgaccttcagtgaccctcaatgaccttcagtgacctttagttgccctaaatgaccctcaatgaccttcagttgccctaaatgaccttcagtgaccttcagttgccctcaatgaccttcagtgacccctgcgtgaccttcagttgccctcagtgaccctcgttgacccctgagtgaccctcagtaactttaagtgaccctttagtgactttaaatgacccctgagtgaccttcagtgacccctgagtgaccttcagtgacccctcagtgactttaaatgaccttcagtgacGATTCTCCCGTTAATCGAACACTTGCTAGAGCACTTTTTCTTGTAAAGTTCTCGGTAAAAAGTATACGTTGTTTTTTTTCATGAACCGGGAGAGGATTGTGGATTTGAGTAATTAAATAGCAAATAATAAGTAAATGATCACTAACGCACATATCTACGTGCAAAAGACGACTCCAACTCCTCAAACCGGTGCGTCAGCGTCCGCCCGGCAACAACATTCTCCGTGTTGCGTAATCTCTTGGCAGCGCGCCCGGTTTGGACCGAACACCCGGAACAAACCCGGACGGACGAGTTGACACAAAGAAGCACTGGAACACGACCTCTGACCTCTGCCACGCAGACCGGTCCACGAGGAAGAGAACCACGGGTTCCATGTTCCATGTTTCCTGTTCCACGACGAACGAACAGCGATTGACTGTGAACGACGAGTTCTTTTTAATCTGAGAGTTTGACTCGTTCTGGAGCGCTTCCCCTTTAAAACCCAGTCCTCTGTTGTGTTTTGCTTCTCCTGTACGGCTcagggttcatacggtcatggaaaacctggaaaagtcatggaatgttaaatggttatttccaggccgtgaatagtttttgtaaagtcctgtaaacgtgatatattcatatcttcatttacgctgagttttaaataattaaaatgctttttgaacggatgacgctctaaatataagccggtatcatacgctctctttcatattcgcacattttgccgtgctgcaagtgaacgcaccataaccgagaagacatggatgtttattcttttaatctaaactattgttcatttgagtcatttaaggttttatactgacggctttgggattctcactgttagtttaaataccacatcttctctttttcatttatgcaaaatgaaaatttggttaaaagtcgtgggatagtcatagaaaagtcgtggaatagtcatataaaactcgtgggatagtcgtggaaaagtcgtggaatagtagttaaatagtcggggaaatcgtggaatagtcgtgaaaaacttgtgtaatagtcgtgggaaagtcatagaaaactcgtggaatagtcatataaaactcgtgggatagtcgtgggaaagtcgtgggatagtGTTTAATGATCTCTCCTGTGCTCCGGCTGCAGCTCTATGACCAGGAGGAGCTGCTGACGTGCATCAAGAAGCTGGTGGAGCTGGACCAGGACTGGGTCCCCTTCTCCCAGGACGCCAGCCTCTACATCAGGCCCACCTTCATCGGGACCGAGGTGACTGTAGCTCCGCCCCCTCACGGGATGGACACCAGCTGGTGgTCTGCACGCGGTCCCGACTGACTCCTGATTACCcctcctcctcctcctcctcctcctctcctccAGCCGTCCCTGGGCGTGTCTCCTCCCACCCAGGCGATGATCTTTGTGATCGTGGGCCCGGTGGGTCCGTACTTCTCCACCGGCTCCTTCAGCCCGGTGTCGCTGCTGGCCGACCCGTCCTTCGTGAGGGCGTGGCGAGGAGGCGTGGGCGCCTACAAGATGGGGGGGTGAGCTTCCTGCCGGCACCTCGGCAAAAAAAACAACGATGATCAATATTGAGATTATTGGTCGATTTTTTTtATTTTTTATGTCAGATTTTACAGAAACAAAACTCCATCAACACAGCATCTTTGCTTTGAAATAAGCTTCTTTCTCTTGTCCTTCTTTTTCTCCTTtTTCTTCTCCTTCTCCTACCTTGTCTTCTTTTTCTTCTTCAGAAGAAGAGTTGATTTTGATTTGTAATCCTCAATTACACATTTTAACACCTCAGAGGAACCtgttgctcaacgtgttgctcaacgtCTCACTAACTCCAcGAGTCACTCTTCTGTCTGGAGGAACCTGTCcTACCTGTGAGGTTTGTTCTGTGGAGTGTTCCCTTGTCTGACTGAAGGTCGTCTGGAGTCGGATCAGAAGTTATTTTGACTCTTTTCCCATAgtgaaggctattagagggggctggtgaaggctattggagggggcgggtgaaggctattggagggggcggggtgaaggttattagagggggcaggtgaaggctattagagggggtGGCGGCGCTCCTGTACTCgTCTCTCTTTGCCTCCGATCTCAACGTGCTGCCAGCGAGATTATGCAATACGACCCACTTCACCTGGCGGCTTGGATGTAGCGGCAGCAGCAGGTCAtgtgaccgtggagctgtgtgaccgtgtgtatgtaaccttgtgtatgactgtgtgtgtgaccgtgtgtgtgtgtatTTTTTTTCTTTCATTCTCAAACATTAGATCTTTTAAGAGGAGATTCTTCTTGTCGTCGTTTCCAGCTGCTCTGAAACAAACGGCAAAGAAAGATAACAACTTTTTTTAAATTATTATTCATATAGTTTTTTTTGGTATATATTTATATTGTTCATTATGTAAACAATGTGGATGCAGATTCCTTCCAGAGGTTTTATTTTTTTTGTCCACCAAAAACCCACTAAGCGGACAGTTGGTTGATAAATCTGCTCGTCGCTACCCTCTGGTGGACAAAGTATGTAATGACGCTGTTTCTCGATTAAACCTCATCCAATATGGATACTTTAAGCCTTTAATATCAATACTTTACACAAAAAGATATATCGAAATGTTGCCCAATATTGTgTTTTCAACATTATGCATGTGGAGCTAAAAAGAGTAAAATATTGgACATATTTACCTCCACTCGTATCCTCTTTTAAATTAAAATTTAAAACGGTTCCAGTTATTAAAATGTCTTTCTCGACCCTCAGGGAAAAGTGCCCTCCTATAACCTTAATGTTACATTTATTATATACATTTAAATATCATTTCAACAAAGTAGTCTAAGCACTATAACCGTATGAATATAGAACGTCAAGAATTTACTCAATTTTCTAACATTTATTTCTCCTTTCATGAACTAGAAATGGAGCGTCTGTGTGCCAGTAGTTTGAATCCCGACTAcAATATATCACGAGTCGTTGTTTGCCAAATAAATACAGTTTAAAAAGTCCAAATTATAGCATACCATTAACATGCTATTTTtAAAAAGTCATATTTTAACGTGCCAGAAAAGTCGTGTCATAAAAATCCTTATAAAATAAGCCATGAAAATAACTGTATAGTATGTCATAAAATAGTAAATGCATAGGTATATAATTAAAATTAAATGAAAACCTTGTAAAAATAATCCAATATTGTTTCAAACGAGAAGTCATCGTATAGTATGGCATTAAAAAAACAATAATGCAATATGCCATATAACATTATTATACTAGAGAATGCCAAATCAATATCAAATGAGTCAGAGGAACCAAAAAGTCACGAGTTGGAATAGTATTTAATTTTTTTTAAACGTCATCCTATATGCATGTAAAAGGTCAGTAAGATTATAAAAGTCTTTAATCCTGTCAATTAGTGTATAATTGTGCATTTTTCATGATGCATCATGAAAAatataaaataaataaatatatatatatatatattgaataaatacaaatatttatttatatttatatatatatatataaaagaaaaaatatatatattcataaatgtaaatatatatatatatatacatatttttataatttgtattatatatatatatctaataatccAATCAAATAATAAGTCGCCATTTTTCCTGCCCCTTAttgatgccctttgccccgccccctcttgacgcctctggtcccgccccctctAGTAACTACGGGCCCACCATCGCGGTGCAGAACGAGGCGTTGAAGCGCGGCTGCCAGCAGGTCCTGTGGCTGTACGGCGAGAAGGAGGAGATCACCGAGGTCGGCACCATGAACCTCTTCATCTACTGGACCAATGAGAAAGGAGGTTCGGACCCATTCGCCGCCGGATGTTTTAAAaCGCCTTAATtGTTGTGATGGAAAGCTCAAACTGTGTTTCTTCTTCTTCAGAGAAAGAGTTGTTCACCCCTCCTCTGGATGGCATCATCCTCCCGGGAGTCACCAGACAGTCTCTGCTGGACTTGGCCAGATCCTGGGTAGGTCCGCCGGGCAGGAGACCAACACGAGGCGGCACACGCGTGTTTTTAAATTCACATTTCACCCTAAATGTGTCCTCAAATTTTGCACACGCAAAGgTTaaAACCCACCTCTGCTGCACCTGGTTCCTCCAAATCCTGATGGCTCAAAACTATATGcggatggacagatttatttatttatatatatatatgtgtatatatatatatatttaatttatatttattcatatatattaatttatatatttattcatatattaatttatatatatagtttatatatttatttatatatatattcatttatatatatttatttatgtacttatttatatatttataAtgctcacagctctctattcacatgaactctgctcacggcttcctgctcGTCTCCTTCAGGGCGAGTTCAAGGTGACGGAGCGCACCATGGGCATGAAGGAGCTGCTGGGGGCTCTGGAGGCCGGCAGAATCCTGGAGGTGTTCGGGGCCGGGACGGCCTGCGTGGTGTGCCCCGTCGGCAGCCTCCTCTACGGGGAAAAGGTGAGGGCGCTCACCTTCCCTCGTGtccttctcatgtcctttccttctcgtgtccttCTTGCGTCTGCTGGTGCAGAGTTGATATCCTCCTGGTTTGCTCGTTCTGACCTCGAACCCCCGGTTTCCACAAGGATTTATTCATCAGGGATTCAGATTGTAGTCGTATTTTTGCTACACAACAAAatatatataacaaattaaatatatatatttatttatttacatGTTTTAACAGTTCAGTTTACAGTTTATAAGTAAAATGTCTCTGTCCCTCTCAGACCTATGAGATCCCCACCATGCAGAACGGTCCGGACCTGGCGAAGCGGTTCCACAAGGAGCTCACTGACATTCAGGTACGTGCGCTTTGGCGCCCTCTGGCGGCCGCGAGAGGGAATGTTTTTCAACTTGGCTTTCTCACTTTGTAATCTAAAAGAAAGCAAAAGCTACTTGTCTTGGAGTATTGGAGAGAAAAataatgtatatattatataaatatatataACTGATGCCAGATTTGGTGTAACTCTTTCATTTTAATTTgTAATTTGAAACTTCTTAAAATATAGCTTTATTATTTTTTAAAGCAACAAATAAAAACCTGTTTAGCTTGTAAATGTCTCTTTTCCCTTTTTGCTTCTCCCAGTACGGACGCAAGGCGAGCGACTGGGCGCCACTGGTCGTCCCGTGTTTGTTTCCACACGGACTCCTTATCGCGACTTGTCATTTCTACGTCGCGGAGATGGCAGCGCTCCGAACGGCACTCCATGGACGCCTGGTTCAGGCCCTCCCCCTGTCCCTCGGCGGGGTCCGCTCCGCCAGCTCCTTCAAGGCGTCTGACCTGGTGGTGGAGCGCAGCGCCTCCTGCGGGCCGAAGCCCGACCCGTCCTCTCTGGTGTTCGGTAAACATTTCTCGGACCACATGTTGACCATCAGCTGGTCGGCGGCGGGCGGCTGGGAGGCGCCGCACATCAAACCGTTCCAGAACCTGTCGCTGCACCCGGCCAGCTCCGCCCTGCACTACTCCATCGAGCTGTTTGAGGGCATGAAGGCGTTCCGCGGCGAGGACAACCACATCCGCCTCTTCAGGCCGATGCTGAACATGGAGAGGATGCACCGCAGCGCCCACAGGAGCAGCCTGCCCCTCTATGACCAGGAGGAGCTGCTGACGTGCATCAAGAAGCTGGTGGAGCTGGACCAGGACTGGGTCCCCTTCTCCCAGGACGCCAGCCTCTACATCAGGCCCACCTTCATCGGGACCGAGCCGTCCCTGGGCGTGTCTCCTCCCACCCAGGCGATGATCTTTGTGATCGTGGGCCCGGTGGGTCCGTACTTCTCCACCGGCTCCTTCAGCCCGGTGTCGCTGCTGGCCGACCCGTCCTTCGTGAGGGCGTGGCGAGGAGGCGTGGGCGCCTACAAGATGGGGGGTAACTACGGGCCCACCATCGCGGTGCAGAACGAGGCGTTGAAGCGCGGCTGCCAGCAGGTCCTGTGGCTGTACGGCGAGAAGGAGGAGATCACCGAGGTCGGCACCATGAACCTCTTCATCTACTGGACCAATGAGAAAGGAGAGAAAGAGTTGTTCACCCCTCCTCTGGATGGCATCATCCTCCCGGGAGTCACCAGACAGTCTCTGCTGGACTTGGCCAGATCCTGGGGCGAGTTCAAGGTGACGGAGCGCACCATGGGCATGAAGGAGCTGCTGGGGGCTCTGGAGGCCGGCAGAATCCTGGAGGTGTTCGGGGCCGGGACGGCCTGCGTGGTGTGCCCCGTCGGCAGCCTCCTCTACGGGGAAAAGACCTATGAGATCCCCACCATGCAGAACGGTCCGGACCTGGCGAAGCGGTTCCACAAGGAGCTCACTGACATTCAGTACGGACGCAAGGCGAGCGACTGGGCGCCACTGGTCGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01063	Aminotran_4	Amino-transferase class IV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001544	Family	Aminotransferase class IV	Interproscan
IPR005786	Family	Branched-chain amino acid aminotransferase II	Interproscan
IPR018300	Conserved_site	Aminotransferase, class IV, conserved site	Interproscan
IPR033939	Family	Branched-chain aminotransferase	Interproscan
IPR036038	Homologous_superfamily	Aminotransferase-like, PLP-dependent enzymes	Interproscan
IPR043131	Homologous_superfamily	Branched-chain-amino-acid aminotransferase-like, N-terminal	Interproscan
IPR043132	Homologous_superfamily	Branched-chain-amino-acid aminotransferase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11825	SUBGROUP IIII AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004084	Molecular Function	branched-chain-amino-acid transaminase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009081	Biological Process	branched-chain amino acid metabolic process	Interproscan
GO:0009098	Biological Process	L-leucine biosynthetic process	Interproscan
GO:0009099	Biological Process	L-valine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-