Gene detail

Detailed information of HS19785 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19785	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	chr23	141205	144326	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19785

ATGACGCAGTTTTTACCCCCGAATCTGCTGGCCCTGTTCGCCCCGCGGGACCCGATCCCTTTCCTCTCGCAGCTCGAGAAGCTGCCCCACGAGAAGCACCACAACCAGCCTTACAGCGGCATCGCCCCGTTCATCAGGCATTTCGAGGTGAATATGTTATCTTCTCAAATAAGCGTAGGCTTTGAATGTTTCCCATGTTATTTCCGAATGCCACATTTCTCATGTTTTCTTCTCACTTTGGATCAGGATCCTCGAGATGCCCCCCCACCAACAAGGGCAGAGACGCGCGATGAGCGGCTCGAGAGAAAGGTGAGGTATTTTATGAATGGCACtgggaacttggttgttccccttctagtgatgtcgggggcaacattatatttcttggagcattttttccctttgcccttgtgtatttcacagggttcgtacggtcatggaaaacctggaaaagtcatggaattttaaaatggtcatttccaggcctggaaaagtcatggaaaaaaactcaaatcataaaagttttggaaaaatcatggaaatgttgttatatacacatgttcatttacgacgagtttgaaataattgatatgtttttttaaagaaagactaaaaaacgcacaacattttctaaattgttcatgtttataccgaaatttcagtttggtcgtggaaatttggtttaaagtcatggaaatccattggtcaaaatgtgtaagaaccctgcatggaaaacctggaattaaagtcatgcaattttaaaatggtcatttccaggcctggaaaagtcatggaaaaaacgtaaatcataaaagtttaggaaatgttatggaaatttgttataatcacatgctcatttacgccgagtttaaaagaattaatgttttttaaagaaagacgctcaaactataagccggcgtacgctctcaatacgcaaaatgttctaaattgttcatgtttataccgaaatttggtttaaagtcatggaaatccattggtcaaaatgtgtaagaaccctgATTTCCGACACTGCATTAACTACATTAAGCTGTTGGTCAAGGGGCGGGAGGTTATTCTTGCTCAATGGCCAAACTTGTCTGAAGTGGAAGATGTATGCCTGTTGCATAAAAACAGACGAGTTTCTTTCCAAAACTATTTAACAAGATTGAACACTATGTTGTTTTTTTACTGTTTGGCATCATATTGGAACTAAATGGAACCGTCGTACATTAGCTGTTTTCTCCATTACTGCTTTGAGCATGAATATTACTTTCAATACAATAAGCCTACGTATCTCCTTACGGTTTTCCAAATGTTGCTACGCTACCACAGTGTTGGTGGTAACTGCCATGCTACTGTTCTGAGTCGTATACATTATGTTTACATTCTGGGACAGGCTACTTTTCAATACTTCATGTTCATTCTTATCACGTAATACACACATCTGGTGTTTTACTTTTCTTCTGAACGATGTGTTCTCTTACATTGCCAGTTAGATTTATAATTCGTAGAGTGTTGCTCATCCTAGGGACTGGGAGCCTCTACTGAGTGATCAAGGATTAAACATTTTCATGTTAATCTTTTGCAGAGGCGGGAGAAGATTGAGAGGAGGCAAGCCGTGGTGGAGACAGAACTCAAGCTTTGTAAGTGTTCACTGTGACGTACATTCCGATCCCTTCTCGCCGTTCGGGGCTTCTTGGTTTGAACTAACCGTTTTTTATATTTGCATCATTTCAGGGGACCCCCATAATGACCCCAATGCACAAGGGGATGCCTTCAAGACACTGTTTGTTGCCAGAGTGGTGAGTAGATTGAAACAAATGAGTGTGATTTTAGGCCTCCTTGTGACATGTTTGTAGATTAAGACCATTGTTTTGTTGTCTAATGATCTTCTCTTTGCTGTAGAACTACGATACGACCGAGTCCAAGCTTCGCCGTGAGTTTGAGGTCTATGGCCCCATCAAACGGGTACGTTTAGCCCCTGTTTCTCACTTGTCTAGACTTGTTTACAGTAAGCGTACAAACATTTAGATGATCTCTATAACACCATGACATCCATTCATCTAAATCTGTGATACGGTTTGTTGGCGAACAAGACGAATgttcaaaccaaaagcaaggcacatttttttgcgcgactagattccatgcaacgttaatgcaccggtgtgaataacgccactttccggcatgcgacgtaggtgcaacaaattgccatgttgcaaagccaatcggcgttgagacgctccgcccgtcatcgctgacgtcgtgccattagtggatctactctagaagcgctggaagcggcagtcatccaggcgtagtcggtgaaagtcaccgagctgtgtgagcctacgggtgatgatagatatatatattaatgttatgagcccaaacacaaaggttgtaggatttccacaacaagtataatgcagaagtggtggttattttcatggtgcatggcaggaatgataactgtttccacagggataagccacgccccctccggcgagtaaactcctcgcttttggtgtgaacgcagcATAAGAGACCACAGTTTGTGTCAGTCGTGCCGAAACTTGATCTGATATCTCGGTGACATCTGAAACATTAAAATATGTCACCGACACTAACTTTTGTTCACTGTACTTTTAATTTATTGTAATAATTTTTTCTATTTTTTTATTTTTTATGGTTCAAATGGCCATTCCACAAATTTTAATTATACTTGGTGATAAGAAAAATGTAACTGCTTGTACAGTGTAGCACGCTGGCATGCAATGTACGGCCCATTCAGGAAGCATAGGTTTAGTTGTTGTTGCCCATGTTTGTGGTTTTGGCATTACACATGATGTGTGCATGCATCATATTAGGATGTGTGCAAACACACTCACCGTGTGTAGCCTGGTGTGGTTTTGCAGGTCTGCTTTTGTCATGACTAATGTCTTCTCGTCGGTTTGTTCCAGATTTACATAGTCTACAACAAGAGGACGCAGAAGCCCCGGGGATATGCGTTCATTGAGTATGAGCATGAACGAGACATGCACTGTGAGTACCAGTGTACATATGGTCATATGTTCATAGAGACATGCCTGCACTTCTGTTCTACACGGGTGTTCTGGATGACGCAGTTTTTACCCCCGAATCTGCTGGCCCTGTTCGCCCCGCGGGACCCGATCCCTTTCCTCTCGCAGCTCGAGAAGCTGCCCCACGAGAAGCACCACAACCAGCCTTACAGCGGCATCGCCCCGTTCATCAGGCATTTCGAGGATCCTCGAGATGCCCCCCCACCAACAAGGGCAGAGACGCGCGATGAGCGGCTCGAGAGAAAGAGGCGGGAGAAGATTGAGAGGAGGCAAGCCGTGGTGGAGACAGAACTCAAGCTTTGGGACCCCCATAATGACCCCAATGCACAAGGGGATGCCTTCAAGACACTGTTTGTTGCCAGAGTGAACTACGATACGACCGAGTCCAAGCTTCGCCGTGAGTTTGAGGTCTATGGCCCCATCAAACGGATTTACATAGTCTACAACAAGAGGACGCAGAAGCCCCGGGGATATGCGTTCATTGAGTATGAGCATGAACGAGACATGCACTGTGAGTACCAGTGTACATATGGTCATATGTTCATAGAGACATGCCTGCACTTCTGTTCTACACGGGTGTTCTGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF12220	U1snRNP70_N	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR022023	Domain	U1 small nuclear ribonucleoprotein of 70kDa N-terminal	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051183	Family	U1 snRNP 70 kDa and U11/U12 snRNP 35 kDa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0030619	Molecular Function	U1 snRNA binding	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-