Gene detail

Detailed information of HS19753 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19753	ARMADILLO SEGMENT POLARITY PROTEIN	chr22	22860676	22866447	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS19753

ATGGCGTCCCAGGCTGATCTGATGGAGCTGGACATGGCCATGGAGCCGGACCGCAAGGTGGCCGTCAGCCACTGGCAGCAGCAGTCCTACCTGGACTCGGGCATCCACTCcGGAGCCACCACCACGGCGCCCTCCCTCAGCGGGAAGGGCAACCCGGAGGAGGACGACGTGGACAACCAGGTCCTGTACGAGTGGGAGCAGGGCTTCAACCAGAGCTTCGCCCCGGAGCAGGTCCAAGACATCGACGGCCAGTACGCCATGACCCGCGCCCAGCGGGTGCGCGCGGCGATGTTCCCCGAGACGCTAGAGGAGGGCATGCAGATCCCCTCCTCCCAGTACGACGCAGCCAACCCCACCAACGTGCAGCGGCTGGCGGAGCCCTCGCAAATGCTCAAACACGCCGTGGTGAACCTCATCAACTACCAGGACGACGCGGAGCTGGCGACCCGAGCGATACCCGAGCTCACCAAGCTGCTCAACGACGAGGACCAGGTCGTGGTGAACAAAGCGGCCGTGATGGTCCACCAGCTCTCAAAGAAAGAAGCCTCTCGCCACGCCATCATGCGCTCGCCCCAGATGGTGTCGGCCGTCGTGCGGACCATGCAGAACACCAACGACGTGGAGACGGCGCGCTGCGCCGCGGGGACGCTCCACAACCTGTCCCACCACAGGGAGGGGCTGCTGGCCATCTTCAAGTCCGGAGGGATCCCGGCGCTCGTCAAGATGCTGGGGTCGCCGGTGGACTCGGTCCTGTTCTACGCCATCACCACGCTGCACAACCTCCTCCTGCACCAGGAAGGAGCCAAGATGGCCGTCCGCTTAGCCGGAGGTCTCCAGAAGATGGTGGCGCTGCTCAACAAGACCAACGTCAAGTTCTTGGCCATCACCACCGACTGTCTCCAGATCCTGGCCTACGGGAACCAGGAGAGCAAGTTGATCATCCTGGCCAGCGGCGGCCCTCAGGCGCTGGTGAACATCATGAGGACGTACACCTACGAGAAGCTGCTGTGGACGACGAGCCGCGTCCTCAAGGTCCTGTCGGTCTGCTCCAGCAACAAGCCGGCCATCGTGGAAGCCGGAGGCATGCAGGCGCTGGGGCTGCACCTCACGGACCCGAGCCAGAGGCTGGTCCAGAACTGCCTCTGGACCCTCAGGAACCTCTCAGACGCTGCCACCAAGCAGGAGGGGATGGAGGGTCTCCTCGGGACGCTGGTCCAGCTGCTCGGCAGCGACGACATCAACGTGGTGACGTGCGCCGCCGGCATCCTGTCCAACCTCACCTGCAACAACTACAAGAACAAGATGATGGTGTGCCAGGTGGGCGGCATCGAGGCGCTGGTGCGCACCGTGCTCCGGGCCGGCGACCGGGAGGACATCACGGAACCGGCCATCTGCGCCCTGCGCCACCTCACGTCTCGCCACCAGGACGCGGAGATGGCGCAGAACGCCGTCCGGCTGCACTACGGCCTGCCGGTGGTCGTCAAGCTGCTGCACCCGCCGTCGCACTGGCCGCTCATCAAGGCGACGGTCGGGCTGATCCGTAACCTGGCTCTGTGCCCGGCTAACCACGCCCCCCTGAGGGAGCAGGGCGCCATCCCCCGCCTGGTGCAGCTGCTGGTCCGAGCGCACCAAGACGCACAGAGACGCACCAGCATGGGAGGCACGCAGCAGCAGTTTGTGGAgGGCGTCCGCATGGAGGAGATCGTGGAGGGCTGCACgGGaGCGCTtCACATCCTGGCCAGAGATGTTCACAACAGAATAGTCATCCGGGGACTCAACACCATCCCACTCTTCGTCCAGCTGCTGTATTCTCCGATCGAGAACATCCAGCGtGTGGCGGCCGGCGTCCTGTGTGAGCTGGCTCAGGACAAAGAGGCGGCCGAGGCCATCGAGGCCGAGGGCGCCACGGCGCCGCTCACCGAGCTGCTGCACAGCCGCAAcGAGGGAGTCGCCACCTATGCTGCTGCGGTTCTGTTCCGCATGTCTGAGGACAAACCTCAAGACTACAAGAAGCGTCTCTCAGTggagctcaccagctctctgttcaggaccgaacccatggcctggaacgagACTGGAGACCTGGGTTTGGACATTGGAGCACAGGGAGAGCCTCTGGGCTACAGACAGGAAGACCCCAGCTACCGTTCCTTCCACTCGGGGGGCTACGGAGGCGACTCGATGGGCATGGAGCCCATGATGGACCATGACCTGGGCGGGGTCCACCACCCGGGCCAGGACTACCCCCCCGTAGACGGGCTGCCTGACCTGGGCCACGCCCAGGAGCTGATCGAGGGTCTCCCACCGGGCGACGCCAACCAATTGGCCTGGTTCGATACCGACCTG

Transcript

HS19753

ATGGCGTCCCAGGGTGAGTTTGTTtcctgcctcctctctcctgccccctctctcctctctctcctctctcctgcctcctccctctctcctgccccctctctcctacctcctgcctcctccctcctccctcttctctcctgcctcctccctcctctcctGGTGTTCTCATTGGAGGAAAGTGAAGTAGTTGTTGATTTACATTCCAAACGTCAGGCCTGAATAGACTTTACTAATGATCCACACATTATAAAATGAAACTATGAGCaAACGGCAAGAAAAGCAGGTTAGAAATAAAATGATCTCACTGGTTGAGTAAAAAgAATCTAAACTAGGTTAATAAGTTTGATCATTCCTTATAAACGGTGTTTAAACGGCTTTAAACTCGACACTGTTACCACATTGCATAACTAATCTCTTTATATACTTTcttttaagcattttattttaagtttttacaagtcacaccagaccaccaaaaacaacaacgaataaatacaaattacatgacgaataaatacaaattaaatgacaaataaaaattaaatgacaaataaataTAATGTACACTCTTCATATACTCGTCCGTAACCTTTCTGTGAGTTGGTTTGATGTTCCAGAAGTGTGATGATGCTCCTGTTCTCAGCTGATCTGATGGAGCTGGACATGGCCATGGAGCCGGACCGCAAGGTGGCCGTCAGCCACTGGCAGCAGCAGTCCTACCTGGACTCGGGCATCCACTCcGGAGCCACCACCACGGCGCCCTCCCTCAGCGGGAAGGGCAACCCGGAGGAGGACGACGTGGACAACCAGGTCCTGTACGAGTGGGAGCAGGGCTTCAACCAGAGCTTCGCCCCGGAGCAGGTCCAAGGTGGGTCCCGGTCCCCGCGGAGGcCGAtGCTCTGACCCCCAGGTCGACACGCTAACGGCCGCTCTGCCTCCGCCAGACATCGACGGCCAGTACGCCATGACCCGCGCCCAGCGGGTGCGCGCGGCGATGTTCCCCGAGACGCTAGAGGAGGGCATGCAGATCCCCTCCTCCCAGTACGACGCAGCCAACCCCACCAACGTGCAGCGGCTGGCGGAGCCCTCGCAAATGCTCAAACACGCCGTGGTGAACCTCATCAACTACCAGGACGACGCGGAGCTGGCGACCCGAGCGATACCCGAGCTCACCAAGCTGCTCAACGACGAGGACCAGGTAGAGTGGCCGGGCCGCGGCTCTGCGGCGCGTCCCGGCCCCGCCCCTAACGGtCCGTCCCCGGCAGGTCGTGGTGAACAAAGCGGCCGTGATGGTCCACCAGCTCTCAAAGAAAGAAGCCTCTCGCCACGCCATCATGCGCTCGCCCCAGATGGTGTCGGCCGTCGTGCGGACCATGCAGAACACCAACGACGTGGAGACGGCGCGCTGCGCCGCGGGGACGCTCCACAACCTGTCCCACCACAGGGAGGGGCTGCTGGCCATCTTCAAGTCCGGAGGGATCCCGGCGCTCGTCAAGATGCTGGGGTACGTGAGGGGAGCGGCTCGGGCTCCTCGGAGGCAGAGGTCCGTCGGCACGGTAACCTGACGAGCCTCCGTGTGCTCCTTAGGTCGCCGGTGGACTCGGTCCTGTTCTACGCCATCACCACGCTGCACAACCTCCTCCTGCACCAGGAAGGAGCCAAGATGGCCGTCCGCTTAGCCGGAGGTCTCCAGAAGATGGTGGCGCTGCTCAACAAGACCAACGTCAAGTTCTTGGCCATCACCACCGACTGTCTCCAGATCCTGGCCTACGGGAACCAGGAGAGCAAGgtgatgtgtgtagtgtgtgtgtgtgtggtgACCCGCTGACCCCTGACCTGTTGTGGCCCCTGCAGTTGATCATCCTGGCCAGCGGCGGCCCTCAGGCGCTGGTGAACATCATGAGGACGTACACCTACGAGAAGCTGCTGTGGACGACGAGCCGCGTCCTCAAGGTCCTGTCGGTCTGCTCCAGCAACAAGCCGGCCATCGTGGAAGCCGGTACGCGGCGACACCGTGGCGTCGGAGTCGGCTGACCTCCGGGAACACGGAGTGACCTTCGCTTGTTTTGCTTCCTGTGCAGGAGGCATGCAGGCGCTGGGGCTGCACCTCACGGACCCGAGCCAGAGGCTGGTCCAGAACTGCCTCTGGACCCTCAGGAACCTCTCAGACGCTGCCACCAAGCAGGTGAGGAGCACctcgctcactcactcactctctcactcactctctcactctctgtctctctctcactctctctcactctctctctgtctgtctctttctctctcctctcactctctgtctctctctcactctctctctgtctctgtctctcctctccactcacactctgtctctctctctcctctccactcactcactcactctgtctctctctcctctcctctctcactcactgtctctctcctctcctctccactcactctccactcactctccactcactctccactcactctctcactcactctctcactcactctctctcactctcctctctctctctcactcactcactcactcactcactctgtctctctctctctctctcctctctctctctctctctcacccgttgtctggtccctctggtggtagctgtgtatctgtcctctctctctctcctctcctctctctctctctctctctctctctctcactcctcactcctcaccacctgtctctctctctctctctcactctctgtctctctctctctcacccgttgtctggtccctctggtggtagctgtgtgtatctgtcctctctctctctctctctctctctccactcactctctcactcactctctcactcactctctctctctctctctcactcactcactcactctctgtctctctctctctctctctctctctctctcacccgttgtctggtccctctggtggtagctgtgtatctgtcctctctctctctctctctctctctctctctctctctcacccgttgtctggtccctctggtggtagctgtgtgtatctgtcctctctctctGCAGGAGGGGATGGAGGGTCTCCTCGGGACGCTGGTCCAGCTGCTCGGCAGCGACGACATCAACGTGGTGACGTGCGCCGCCGGCATCCTGTCCAACCTCACCTGCAACAACTACAAGAACAAGATGATGGTGTGCCAGGTGAGGCCAGAGGCTCACGCCACCGGGCGACTCCGCTCGCCGCCCGGTGGCGTGAGCCTCTGGCCTCTGGTGTTCCCGTAGGTGGGCGGCATCGAGGCGCTGGTGCGCACCGTGCTCCGGGCCGGCGACCGGGAGGACATCACGGAACCGGCCATCTGCGCCCTGCGCCACCTCACGTCTCGCCACCAGGACGCGGAGATGGCGCAGAACGCCGTCCGGCTGCACTACGGCCTGCCGGTGGTCGTCAAGCTGCTGCACCCGCCGTCGCACTGGCCGCTCATCAAGGTGCGCCCCTCGGCGTCTTTAGAATCCCACCTGAAAACGCCGTTAGTCTAAAATGACGGCGTGTTGCCGTATGTCCTGAGATCCTAAATGACATCATCTTCCAGAAGGAAAGACTTCTCTCAATACGTGATCATTCCCTCGTGTTGTGGCTGCTGCGTACCAGTTGACCTTTGACCCCGTCTTAATGACCTTGCCACGCGTGTTCCTCCAGGCGACGGTCGGGCTGATCCGTAACCTGGCTCTGTGCCCGGCTAACCACGCCCCCCTGAGGGAGCAGGGCGCCATCCCCCGCCTGGTGCAGCTGCTGGTCCGAGCGCACCAAGACGCACAGAGACGCACCAGCATGGGAGGCACGCAGCAGCAGTTTGTGGTGAGACACACACACtAGCATGGTATCATCAATAGAAGTACGGAGATGCAGAAATCAGCGTCTCCCACGGTTCCCAAAACAtttgaaccctcaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcCCCCCCcTCAGGAgGGCGTCCGCATGGAGGAGATCGTGGAGGGCTGCACgGGaGCGCTtCACATCCTGGCCAGAGATGTTCACAACAGAATAGTCATCCGGGGACTCAACACCATCCCACTCTTCGTCCAGGTAGGAACACGCCGGGGTGTTGCGTCATCACCGGGGTGTGGTCACCAGGGATCATAAAGGTCgTAAATGTGCTTGTGTACTGAGTGTGTCCTCGTgtTtGTGTGCAGCTGCTGTATTCTCCGATCGAGAACATCCAGCGtGTGGCGGCCGGCGTCCTGTGTGAGCTGGCTCAGGACAAAGAGGCGGCCGAGGCCATCGAGGCCGAGGGCGCCACGGCGCCGCTCACCGAGCTGCTGCACAGCCGCAAcGAGGGAGTCGGTACGGCCAATCAGAACACGAGGCTGGGCAGATGTTCAGGAGCCTCTCGGTGGCCTCCTAGAGGACGCCtcctctaggatgtgtcctctaggtggcgtcctctaggatgcgtcctctagTCGTGTCCTTCTCTCCTCAGCCACCTATGCTGCTGCGGTTCTGTTCCGCATGTCTGAGGACAAACCTCAAGACTACAAGAAGCGTCTCTCAGTggagctcaccagctctctgttcaggaccgaacccatggcctggaacgaggtacacacacacacacaccaacatgatacacacacacacacacttcaacatgatacacacacacacacacttcaacatgatacacacacacacacacacaccaacatgatacacacacacacacttcaacatgatacacacacacacacaccaacatgatacacacacacacacacacacacacacacacttcaacatgatacacacacacacaccaacatgatacacacacacacacacacttcaacatgatacacacacacttcaacatgatacacacacacacaccacacacttcaacatgatacacacacacacacacattacacatgatacacacacacacttcaacatgatacacacacacacacttcaacatgatacacacacacacttcaacatgatacacacacacacacacttcaacatcacacacacacacttcaacatcacacacacacttcaacatgacacgcacacacacacttcaacatgacacacacacacacacacttcaacatgatacacacacacaccaacatgatacacacacacacacacacttcaacatgTAACATCTTGTGTCTTTCTGTGCAGACTGGAGACCTGGGTTTGGACATTGGAGCACAGGGAGAGCCTCTGGGCTACAGACAGGAAGGTGAGTCACCTGAGacacacacacacacacacctgagacacacCTGAGCAGTCAGGAGGCCTCTCACACCTCGGCGGCTCTAAGAACCTAAAGACTTCCTGCATCCAAACTAAATGCAGCTCGAGTTCAGCTGAAGTCCAGCTCACTCtgtgtgtgtgtgtgtgtgtgGACGCTTGGTTTGTTAACATGCTTCCAACCCCCCCCCCcAGACCCCAGCTACCGTTCCTTCCACTCGGGGGGCTACGGAGGCGACTCGATGGGCATGGAGCCCATGATGGACCATGACCTGGGCGGGGTCCACCACCCGGGCCAGGACTACCCCCCCGTAGACGGGCTGCCTGACCTGGGCCACGCCCAGGAGCTGATCGAGGGTCTCCCACCGGGCGACGCCAACCAATTGGCCTGGTTCGATACCGACCTGATGGCGTCCCAGGCTGATCTGATGGAGCTGGACATGGCCATGGAGCCGGACCGCAAGGTGGCCGTCAGCCACTGGCAGCAGCAGTCCTACCTGGACTCGGGCATCCACTCcGGAGCCACCACCACGGCGCCCTCCCTCAGCGGGAAGGGCAACCCGGAGGAGGACGACGTGGACAACCAGGTCCTGTACGAGTGGGAGCAGGGCTTCAACCAGAGCTTCGCCCCGGAGCAGGTCCAAGACATCGACGGCCAGTACGCCATGACCCGCGCCCAGCGGGTGCGCGCGGCGATGTTCCCCGAGACGCTAGAGGAGGGCATGCAGATCCCCTCCTCCCAGTACGACGCAGCCAACCCCACCAACGTGCAGCGGCTGGCGGAGCCCTCGCAAATGCTCAAACACGCCGTGGTGAACCTCATCAACTACCAGGACGACGCGGAGCTGGCGACCCGAGCGATACCCGAGCTCACCAAGCTGCTCAACGACGAGGACCAGGTCGTGGTGAACAAAGCGGCCGTGATGGTCCACCAGCTCTCAAAGAAAGAAGCCTCTCGCCACGCCATCATGCGCTCGCCCCAGATGGTGTCGGCCGTCGTGCGGACCATGCAGAACACCAACGACGTGGAGACGGCGCGCTGCGCCGCGGGGACGCTCCACAACCTGTCCCACCACAGGGAGGGGCTGCTGGCCATCTTCAAGTCCGGAGGGATCCCGGCGCTCGTCAAGATGCTGGGGTCGCCGGTGGACTCGGTCCTGTTCTACGCCATCACCACGCTGCACAACCTCCTCCTGCACCAGGAAGGAGCCAAGATGGCCGTCCGCTTAGCCGGAGGTCTCCAGAAGATGGTGGCGCTGCTCAACAAGACCAACGTCAAGTTCTTGGCCATCACCACCGACTGTCTCCAGATCCTGGCCTACGGGAACCAGGAGAGCAAGTTGATCATCCTGGCCAGCGGCGGCCCTCAGGCGCTGGTGAACATCATGAGGACGTACACCTACGAGAAGCTGCTGTGGACGACGAGCCGCGTCCTCAAGGTCCTGTCGGTCTGCTCCAGCAACAAGCCGGCCATCGTGGAAGCCGGAGGCATGCAGGCGCTGGGGCTGCACCTCACGGACCCGAGCCAGAGGCTGGTCCAGAACTGCCTCTGGACCCTCAGGAACCTCTCAGACGCTGCCACCAAGCAGGAGGGGATGGAGGGTCTCCTCGGGACGCTGGTCCAGCTGCTCGGCAGCGACGACATCAACGTGGTGACGTGCGCCGCCGGCATCCTGTCCAACCTCACCTGCAACAACTACAAGAACAAGATGATGGTGTGCCAGGTGGGCGGCATCGAGGCGCTGGTGCGCACCGTGCTCCGGGCCGGCGACCGGGAGGACATCACGGAACCGGCCATCTGCGCCCTGCGCCACCTCACGTCTCGCCACCAGGACGCGGAGATGGCGCAGAACGCCGTCCGGCTGCACTACGGCCTGCCGGTGGTCGTCAAGCTGCTGCACCCGCCGTCGCACTGGCCGCTCATCAAGGCGACGGTCGGGCTGATCCGTAACCTGGCTCTGTGCCCGGCTAACCACGCCCCCCTGAGGGAGCAGGGCGCCATCCCCCGCCTGGTGCAGCTGCTGGTCCGAGCGCACCAAGACGCACAGAGACGCACCAGCATGGGAGGCACGCAGCAGCAGTTTGTGGAgGGCGTCCGCATGGAGGAGATCGTGGAGGGCTGCACgGGaGCGCTtCACATCCTGGCCAGAGATGTTCACAACAGAATAGTCATCCGGGGACTCAACACCATCCCACTCTTCGTCCAGCTGCTGTATTCTCCGATCGAGAACATCCAGCGtGTGGCGGCCGGCGTCCTGTGTGAGCTGGCTCAGGACAAAGAGGCGGCCGAGGCCATCGAGGCCGAGGGCGCCACGGCGCCGCTCACCGAGCTGCTGCACAGCCGCAAcGAGGGAGTCGCCACCTATGCTGCTGCGGTTCTGTTCCGCATGTCTGAGGACAAACCTCAAGACTACAAGAAGCGTCTCTCAGTggagctcaccagctctctgttcaggaccgaacccatggcctggaacgagACTGGAGACCTGGGTTTGGACATTGGAGCACAGGGAGAGCCTCTGGGCTACAGACAGGAAGACCCCAGCTACCGTTCCTTCCACTCGGGGGGCTACGGAGGCGACTCGATGGGCATGGAGCCCATGATGGACCATGACCTGGGCGGGGTCCACCACCCGGGCCAGGACTACCCCCCCGTAGACGGGCTGCCTGACCTGGGCCACGCCCAGGAGCTGATCGAGGGTCTCCCACCGGGCGACGCCAACCAATTGGCCTGGTTCGATACCGACCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013284	Family	Beta-catenin	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45976	ARMADILLO SEGMENT POLARITY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0019903	Molecular Function	protein phosphatase binding	Interproscan
GO:0035257	Molecular Function	nuclear receptor binding	Interproscan
GO:0045294	Molecular Function	alpha-catenin binding	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0140297	Molecular Function	DNA-binding transcription factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-