Gene detail

Detailed information of HS19717 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19717	DER1-LIKE PROTEIN, DERLIN	chr22	22094189	22098119	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19717

ATGTCGGATGTCGGGGACTGGTTCAGAAGCATCCCTCTCATCACCCGGTCCTGGTTCGCTGCTTCCATCGCGGTTCCCTTGATTGGAAAACTGGGACTGATTGATTTCAGGAACCTCATGCTGTTCCCAGAGCTGGTCCTCACTAGATTTCACGTGAGTGTCTCTTGTCTCCTGCGTGTAGCGATGTAAAGCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCTGGATGTGCTCGGCGAGCTAGCGAGTGGCTATCGGGGCTCACCGAGCAGCaggcctgtgttgcgtgacagccaatcagaggaggcctgtgttgtgtgacagccaatcggaggGCGAGACGCAGAAGGTTAgGACTTCCGGGTGCTGTCAAAATGCTACTTAATTTAGCAACACCTTGTAAGGcGTAAATATCACACCGGGGCGAGAAAAAAGTATTTTTAATGACCAGAGATGATAAtGTAGCCGAGCTGTTGACGTTTCTGTTTTTAGTGGACGATAATAACTTTAGTTTCAGGTTCTGTTGCTGTTTCAACCACAAGTTGAAGAAAGTAATTTGGACTTCCTGCAGTAAAAGGATCCCTTCAGGCGGCGGGTTGTCGGCGGGTGAAGCCTGACAGGCCTGGCTCGGGGCCAAATTACACAAATATACTAATTTGCCTAATGGTGAAAAGTTACTACGTATATTAAAGTACCACACTCACGTGCAAGTTGTGTCCTATcGTGACGGGTTACTTATAATAACATGTTATTACCTATAGTCAGTTTATACAACATGATGCATTGATAGATTACACCACCTAGCGTTACTTCCAATAAGCTCCAACTTCAGTGTAATGCTACTTTCACATTAACAAGTAACAATAACTCATTTAATATAATGTTATAATGTTGTATATATACACTTTATACTCTCATGCTACACCTGCAAACATAATAAGCATTACTGCTTATGTCTTGATGCATTTTTAATACTTTCTGTTGGTACTAATGTAAGATTTTTCAAAATAAAAGATCTATAGCATTAAATCAGAAGATGTGGACAACGTCAGTAAATAATAATAAATACTCAATTTATATTTTGGTTAtGACTGAGACGTCAACATGACTAATAAATGATGAATCTTTAAAGTCTAGTCGATAAAATTACGTAATACAAATTTGAATCTATTTTGTGCAACATTGAATTTGAGCAAATGTTAAATAAAAGAAAAGCAACACGTTTGTATTATTGTTGGATTTAACGGCTGAAAAGATTCATCGAATATCAACTAGATAACTGCTCTAaTGTAGGTGTACTAAAATACATAAAgTTGATGACAAAATAAAAGGTGGTGCAGCCACATTTCTAGTAATAACTGAGGCACATTCAAGATGTATTCCACTTCTATTGCACGTTGTGATTATATCCTGTCTGTTTTAAAGTAATTTATAGTATAATAGTAATAGTAAAGGTTACAATCCACACGCAGGTGCTTAGCGGCTGTGcTGACGTGCCTCTCTCTCCTTTCAGCTCTGGAGGCCAGTGACCGCCACCTTGTTCTTCCCAATAACCCCCAACACCGGCTTCCTGTACCTGGTCAACCTGTACTTCCTCTACCACTACTCCAGTCGGTTAGAGAcaggtgagaacacacacacacacacacacacacacacacacacacacacacacacatacacacaggttcaataatatcatttaaactccatctcaaaacatacctggttacactagcatgtggttaaattacatattctatggccttcttttttatctttttagttaatttatttattgtgttttttaattcataaccctaaccccctaaccctattgtactttgatcttttcactgttgatgtgttttagcccctgttgttgttaaatttgtttttaattgactcctcctgcactttgtgacactttgtgatcagtgTGTGTCACGCTCATCCTCTTCCCGGTATTGTTTTCCAGGGGCGTTCGATGGCCGACCGGCGGACTACATCTTCATGCTCTTCTTCAACTGGATCTGCATCGTCGTATCCTTTTGGGCCGGCGGGACAAAATAACAACAACATTTTGTTTAAATGATGAATTTCATTCCACCGTCTCTAAAGTTACGTCCCAAGTTAGTTTTTCACTCCACCATTGATCCTGTGACTCAGCTGTCTTctttgcaaaccttctcgctctctctctctgtctgtctgtctctctctctctctgtctctctctctctcggtctgtctctctgtctctctctctctgtcttcatctctctctctctctatccctctttctctctgtcttcatccctctctctctctgtcttcatccctctctctctctctgtcttcatctctctctcggtctgtctctctctctctgtcttcatctctctctctctatccctctttctctctgtcttcatccctctctctctctctctgtcttcatctctctttttgttttcatctctctctctctctccatctctctgcagctcTGTGCCAGTGGCCTAATCTAGGTCACATGTGCGTCTCTCCTCTCTGGAGTTCAGCTTTGATCGTCTGTCTTTTCCCTGAGACACATTTGGGGAAACCTCCTGTTCTCCTTGAACCCGATCTTCAGTTTTATAGTTTCATAGTTTCTGTTACTTCAGGCAAATTGTGGGAGGTTAGGTTTGCTCAAAGGCACGTGTCAGTGAGGCAGTGTGGATATTTGATTGGCAACCCTTCCGGTCCCCAGCTGCTCTAACCTTCAGGCTCCAGCTGTGATTGTTTTGAGCCACCGGGGGTGTTGTTGTTGTTGTCGTCCTTGACTCTGGCTCTAGATAACTGGGATGCTGATGGACATGCGGGTAAGAATCCTCCTTTTAAATGGAAAGAAGGGtttttattttaattttattttgaaatattatatttattttttaatatatcaaatataatatatttctatgaaatataatatatatatatatataGAACAAAAGCTCCACATTTAAAATATATCGATAATGTTGTTGCTCCTCAGCTGCTGATGATCCCcCTCATCATGTCGGTGCTCTACATCTGGGCTCAGTTCAACAAAGACACCATCGTGTCCTTCTGGTTCGGAACGAGGTTCAAGGTAAGGTCCCCGTCACCGCCGCCGCACACGCTAACTTCTGCTTCACAAGAAATACAAAGTATTTCACAGTAATGTCGGGGCACATTTATCCTATTTTTAATGTTTTTGACCACATCGTCTGAACTTATTCCAATGTTCACATCAATAAGTGTTCCTATTATTCCGTCGCAGGCTCATTATCTACCGTGGGTCATTCTGGTTTTCAACTTCATCATCGGAGGCTCGTGAGTAACTACTTTAACAATGTATTTTATGTTAATGAGGAGGTATCTCCTGTACTCTGTAGGGAGGGAGTCGTCATGTTGCTCTAAGTTGTCCCCGTGAGGTTTGAGTATTAATGTTTCTCTTGCGCTGCAGGTTTGTGAATGAACTGACGGGGAACCTGGTGGGTCACCTCTACTTCTTCCTCATGTACAAGTACCCCGTGGACCTGGGAGGACGCAGCTTCCTCTCCACACCGGAGTTCCTGTAAGTCTTAATCTCCCAAATGTTTTAGAATTTTCTTTTGTTGCGCAATACAATGCTTAAGTTAGTTAGTTCGTTTCTTCTTGTTGTTGCTcGATTTGCAAAAAAGTGTTTTCTATTCCTTGATTTCTAATGTTCCCCCTCCCCCCTTTGCACATCTCTCTCTCCAGATATCGGTTCTTCCCCAACAGGAGGGGAGGAGTGTCCGGCTTCGGAGTCCCCCCCACCAGACCAGCTGCCCaggagccgcaggggggagggggtgatggaagaggaggaggaagaggaggaCGTCACACCTGGGGCGAAGGCTTCCGTCTGGGGGGTGAAATGTCGGATGTCGGGGACTGGTTCAGAAGCATCCCTCTCATCACCCGGTCCTGGTTCGCTGCTTCCATCGCGGTTCCCTTGATTGGAAAACTGGGACTGATTGATTTCAGGAACCTCATGCTGTTCCCAGAGCTGGTCCTCACTAGATTTCACCTCTGGAGGCCAGTGACCGCCACCTTGTTCTTCCCAATAACCCCCAACACCGGCTTCCTGTACCTGGTCAACCTGTACTTCCTCTACCACTACTCCAGTCGGTTAGAGAcagGGGCGTTCGATGGCCGACCGGCGGACTACATCTTCATGCTCTTCTTCAACTGGATCTGCATCGTCATAACTGGGATGCTGATGGACATGCGGCTGCTGATGATCCCcCTCATCATGTCGGTGCTCTACATCTGGGCTCAGTTCAACAAAGACACCATCGTGTCCTTCTGGTTCGGAACGAGGTTCAAGGCTCATTATCTACCGTGGGTCATTCTGGTTTTCAACTTCATCATCGGAGGCTCGTTTGTGAATGAACTGACGGGGAACCTGGTGGGTCACCTCTACTTCTTCCTCATGTACAAGTACCCCGTGGACCTGGGAGGACGCAGCTTCCTCTCCACACCGGAGTTCCTATATCGGTTCTTCCCCAACAGGAGGGGAGGAGTGTCCGGCTTCGGAGTCCCCCCCACCAGACCAGCTGCCCaggagccgcaggggggagggggtgatggaagaggaggaggaagaggaggaCGTCACACCTGGGGCGAAGGCTTCCGTCTGGGGGGTGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04511	DER1	Der1-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007599	Family	Derlin	Interproscan
IPR035952	Homologous_superfamily	Rhomboid-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11009	DER1-LIKE PROTEIN, DERLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000839	Cellular Component	Hrd1p ubiquitin ligase ERAD-L complex	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0051787	Molecular Function	misfolded protein binding	Interproscan
GO:1990381	Molecular Function	ubiquitin-specific protease binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-